Wall clock time and date at job start Tue Mar 31 2020 22:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47124 * 2 1 4 4 N 1.46500 * 109.47251 * 180.02562 * 3 2 1 5 5 C 1.37100 * 119.99570 * 269.99666 * 4 3 2 6 6 H 1.07997 * 120.00389 * 142.47287 * 5 4 3 7 7 C 1.38956 * 120.00105 * 322.47143 * 5 4 3 8 8 N 1.31408 * 119.99850 * 158.69766 * 7 5 4 9 9 Si 1.86800 * 120.00004 * 338.70190 * 7 5 4 10 10 H 1.48496 * 109.47055 * 95.05786 * 9 7 5 11 11 H 1.48494 * 109.47120 * 215.06167 * 9 7 5 12 12 H 1.48507 * 109.46795 * 335.05933 * 9 7 5 13 13 C 1.34773 * 120.00430 * 89.99739 * 4 3 2 14 14 O 1.21288 * 119.99812 * 5.09156 * 13 4 3 15 15 C 1.50705 * 119.99912 * 185.09609 * 13 4 3 16 16 H 1.09000 * 109.73070 * 46.86905 * 15 13 4 17 17 N 1.46076 * 109.59718 * 167.27171 * 15 13 4 18 18 C 1.39220 * 123.39475 * 70.04237 * 17 15 13 19 19 C 1.39427 * 118.79970 * 200.99258 * 18 17 15 20 20 C 1.37893 * 120.22486 * 180.56608 * 19 18 17 21 21 C 1.38304 * 120.28557 * 0.06116 * 20 19 18 22 22 C 1.38322 * 119.84364 * 359.73618 * 21 20 19 23 23 C 1.37924 * 120.03037 * 359.96887 * 22 21 20 24 24 S 1.76746 * 119.86393 * 180.76649 * 23 22 21 25 25 O 1.42106 * 106.78779 * 302.98869 * 24 23 22 26 26 O 1.42100 * 106.78468 * 76.86843 * 24 23 22 27 27 N 1.47704 * 109.59533 * 286.47614 * 15 13 4 28 28 H 1.09003 * 109.47365 * 300.00493 * 1 2 3 29 29 H 1.09004 * 109.47019 * 59.99981 * 1 2 3 30 30 H 1.08995 * 109.46947 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47526 * 239.99627 * 2 1 3 32 32 H 1.08997 * 109.46955 * 119.99331 * 2 1 3 33 33 H 1.09003 * 109.47402 * 59.99529 * 3 2 1 34 34 H 1.09007 * 109.46785 * 299.99592 * 3 2 1 35 35 H 0.97003 * 119.99678 * 180.02562 * 8 7 5 36 36 H 0.97000 * 118.29869 * 250.32475 * 17 15 13 37 37 H 1.08004 * 119.88760 * 0.56087 * 19 18 17 38 38 H 1.08006 * 119.85529 * 180.02562 * 20 19 18 39 39 H 1.07999 * 120.07974 * 179.72004 * 21 20 19 40 40 H 1.08002 * 119.98455 * 179.97438 * 22 21 20 41 41 H 0.96998 * 122.08410 * 118.68492 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1909 1.4425 1.1865 6 1 5.1033 0.8728 1.2829 7 6 3.7122 2.1754 2.2656 8 7 4.0912 1.8711 3.4865 9 14 2.5298 3.5932 1.9808 10 1 1.1338 3.1138 2.1434 11 1 2.8015 4.6700 2.9666 12 1 2.7142 4.1229 0.6057 13 6 4.1785 1.4427 -1.1680 14 8 3.5752 1.5360 -2.2161 15 6 5.6811 1.3268 -1.1711 16 1 5.9894 0.5215 -0.5044 17 7 6.1481 1.0469 -2.5266 18 6 6.1007 1.9775 -3.5609 19 6 6.1404 1.5209 -4.8777 20 6 6.1069 2.4177 -5.9247 21 6 6.0350 3.7765 -5.6772 22 6 5.9910 4.2373 -4.3737 23 6 6.0182 3.3430 -3.3241 24 16 5.9412 3.9356 -1.6607 25 8 7.0268 4.8376 -1.4957 26 8 4.5865 4.2848 -1.4118 27 7 6.2770 2.6002 -0.7185 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9563 -0.8901 35 1 3.7567 2.3825 4.2398 36 1 6.5061 0.1657 -2.7168 37 1 6.1976 0.4612 -5.0784 38 1 6.1376 2.0574 -6.9424 39 1 6.0135 4.4761 -6.4996 40 1 5.9353 5.2980 -4.1778 41 1 6.8291 2.6567 0.0771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104043094.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:18 Heat of formation + Delta-G solvation = -44.568278 kcal Electronic energy + Delta-G solvation = -29315.877119 eV Core-core repulsion = 25323.954484 eV Total energy + Delta-G solvation = -3991.922635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.91537 -38.78740 -36.68488 -36.34255 -35.35688 -35.10008 -33.19403 -32.63129 -31.61164 -31.07440 -29.27470 -26.72100 -25.38705 -24.28840 -23.09416 -22.03919 -21.13640 -19.69485 -18.77258 -18.07208 -17.80262 -17.38060 -16.52011 -16.16418 -16.11000 -15.35314 -15.06964 -14.96076 -14.42782 -14.29105 -14.02894 -13.88838 -13.67571 -13.48769 -13.02447 -12.80801 -12.42282 -12.40355 -12.23435 -11.70262 -11.64887 -11.61570 -11.52424 -11.44891 -11.11491 -11.00102 -10.78943 -10.54921 -10.50114 -10.35708 -10.06422 -9.88376 -9.71687 -9.17810 -9.16076 -8.67302 -7.89217 -7.57638 -6.56506 -4.17160 0.81667 1.14484 1.60144 2.86482 3.09350 3.19673 3.29775 3.53227 3.64523 3.80804 3.91705 4.16015 4.24431 4.77957 4.84509 4.99730 5.20414 5.22838 5.36180 5.41160 5.50002 5.57611 5.61221 5.64795 5.80271 5.89430 5.92917 6.03727 6.06474 6.28359 6.33021 6.34687 6.42416 6.52938 6.70426 6.77194 6.86166 7.13334 7.28013 7.28554 7.60338 7.90896 8.08978 8.81317 9.19689 9.52928 10.52204 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014495 B = 0.005629 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.262946 B = 4972.970158 C = 5829.058550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C 0.102 3.898 4 N -0.438 5.438 5 C -0.353 4.353 6 H 0.106 0.894 7 C 0.076 3.924 8 N -0.855 5.855 9 Si 0.850 3.150 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.231 1.231 13 C 0.444 3.556 14 O -0.569 6.569 15 C 0.376 3.624 16 H 0.138 0.862 17 N -0.736 5.736 18 C 0.319 3.681 19 C -0.197 4.197 20 C -0.035 4.035 21 C -0.190 4.190 22 C 0.012 3.988 23 C -0.710 4.710 24 S 2.681 3.319 25 O -0.969 6.969 26 O -0.932 6.932 27 N -1.092 6.092 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.276 0.724 36 H 0.410 0.590 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.954 -2.684 -11.286 12.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C -0.021 4.021 4 N -0.157 5.157 5 C -0.480 4.480 6 H 0.123 0.877 7 C -0.133 4.133 8 N -0.490 5.490 9 Si 0.676 3.324 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.153 1.153 13 C 0.228 3.772 14 O -0.451 6.451 15 C 0.180 3.820 16 H 0.155 0.845 17 N -0.367 5.367 18 C 0.213 3.787 19 C -0.220 4.220 20 C -0.054 4.054 21 C -0.211 4.211 22 C -0.007 4.007 23 C -0.802 4.802 24 S 2.771 3.229 25 O -0.959 6.959 26 O -0.921 6.921 27 N -0.858 5.858 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.246 0.754 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 3.282 -1.658 -11.203 11.791 hybrid contribution -0.187 -0.187 0.053 0.270 sum 3.094 -1.845 -11.150 11.718 Atomic orbital electron populations 1.21705 0.96271 1.01070 1.01521 1.21761 0.94947 0.97776 1.02359 1.21694 0.81964 0.96633 1.01778 1.43575 1.04158 1.62750 1.05249 1.18968 1.11069 1.30911 0.87045 0.87699 1.25217 0.96877 0.96596 0.94587 1.69744 1.43278 1.37727 0.98211 0.87323 0.80465 0.83013 0.81597 1.20160 1.21494 1.15313 1.20589 0.88865 0.82918 0.84842 1.90630 1.69123 1.53856 1.31482 1.20398 0.90580 0.89323 0.81746 0.84465 1.44806 1.68533 1.15591 1.07757 1.16908 0.86301 0.87215 0.88287 1.20845 1.10381 0.99896 0.90877 1.21014 0.92839 0.93165 0.98408 1.20922 1.08195 0.95800 0.96187 1.20348 0.90513 0.97896 0.91991 1.29775 1.26345 1.00505 1.23589 1.02374 0.74416 0.72402 0.73754 1.93577 1.55427 1.60950 1.85945 1.93706 1.34677 1.80619 1.83085 1.55501 1.66679 1.22385 1.41206 0.92940 0.92969 0.92988 0.92237 0.91127 0.91550 0.90835 0.91362 0.75388 0.85574 0.85737 0.85646 0.85634 0.73102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.91 37.16 0.37 -1.93 16 2 C -0.13 -2.42 6.26 -26.73 -0.17 -2.59 16 3 C 0.10 2.26 4.25 -4.04 -0.02 2.24 16 4 N -0.44 -10.01 2.18 -114.80 -0.25 -10.26 16 5 C -0.35 -8.42 8.79 -14.93 -0.13 -8.55 16 6 H 0.11 2.44 6.88 -52.49 -0.36 2.08 16 7 C 0.08 1.93 5.32 -17.47 -0.09 1.84 16 8 N -0.86 -22.41 13.96 55.50 0.77 -21.64 16 9 Si 0.85 20.69 24.98 -169.99 -4.25 16.44 16 10 H -0.27 -6.38 6.67 56.52 0.38 -6.01 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.23 -6.05 7.11 56.52 0.40 -5.65 16 13 C 0.44 9.63 5.53 -10.98 -0.06 9.57 16 14 O -0.57 -13.52 15.21 5.55 0.08 -13.44 16 15 C 0.38 6.47 3.40 -127.92 -0.44 6.04 16 16 H 0.14 2.00 7.14 -51.93 -0.37 1.63 16 17 N -0.74 -10.81 5.02 -56.10 -0.28 -11.10 16 18 C 0.32 5.19 5.52 -83.84 -0.46 4.73 16 19 C -0.20 -2.69 9.83 -39.26 -0.39 -3.07 16 20 C -0.04 -0.44 10.02 -39.68 -0.40 -0.83 16 21 C -0.19 -2.51 10.06 -39.53 -0.40 -2.91 16 22 C 0.01 0.20 9.74 -39.67 -0.39 -0.19 16 23 C -0.71 -12.75 5.86 -39.48 -0.23 -12.98 16 24 S 2.68 53.33 5.53 -107.50 -0.59 52.74 16 25 O -0.97 -19.94 18.05 -57.11 -1.03 -20.97 16 26 O -0.93 -22.29 16.82 -57.11 -0.96 -23.25 16 27 N -1.09 -19.25 5.80 -8.03 -0.05 -19.29 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.07 1.53 3.18 -51.93 -0.16 1.36 16 34 H 0.07 1.68 7.36 -51.93 -0.38 1.30 16 35 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.41 4.45 8.79 -40.82 -0.36 4.09 16 37 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 38 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.43 6.64 8.96 -37.56 -0.34 6.31 16 LS Contribution 346.46 15.07 5.22 5.22 Total: -1.00 -33.64 346.46 -9.07 -42.71 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -4.94 Total: 11.48 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -2.80 Total: -8.65 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: 0.20 Total: -62.29 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -1.91 Total: -57.66 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.25 Total: 16.44 kcal Atomic # 16 Polarization: 53.33 SS G_CDS: -0.59 Total: 52.74 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.64 -9.07 -42.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104043094.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.858 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds