Wall clock time and date at job start Tue Mar 31 2020 22:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47124 * 2 1 4 4 N 1.46500 * 109.47251 * 180.02562 * 3 2 1 5 5 C 1.37100 * 119.99570 * 269.99666 * 4 3 2 6 6 H 1.07997 * 120.00389 * 142.47287 * 5 4 3 7 7 C 1.38956 * 120.00105 * 322.47143 * 5 4 3 8 8 N 1.31408 * 119.99850 * 158.69766 * 7 5 4 9 9 Si 1.86800 * 120.00004 * 338.70190 * 7 5 4 10 10 H 1.48496 * 109.47055 * 95.05786 * 9 7 5 11 11 H 1.48494 * 109.47120 * 215.06167 * 9 7 5 12 12 H 1.48507 * 109.46795 * 335.05933 * 9 7 5 13 13 C 1.34773 * 120.00430 * 89.99739 * 4 3 2 14 14 O 1.21288 * 119.99812 * 5.09156 * 13 4 3 15 15 C 1.50705 * 119.99912 * 185.09609 * 13 4 3 16 16 H 1.09000 * 109.73070 * 46.86905 * 15 13 4 17 17 N 1.46076 * 109.59718 * 167.27171 * 15 13 4 18 18 C 1.39220 * 123.39475 * 70.04237 * 17 15 13 19 19 C 1.39427 * 118.79970 * 200.99258 * 18 17 15 20 20 C 1.37893 * 120.22486 * 180.56608 * 19 18 17 21 21 C 1.38304 * 120.28557 * 0.06116 * 20 19 18 22 22 C 1.38322 * 119.84364 * 359.73618 * 21 20 19 23 23 C 1.37924 * 120.03037 * 359.96887 * 22 21 20 24 24 S 1.76746 * 119.86393 * 180.76649 * 23 22 21 25 25 O 1.42106 * 106.78779 * 302.98869 * 24 23 22 26 26 O 1.42100 * 106.78468 * 76.86843 * 24 23 22 27 27 N 1.47704 * 109.59533 * 286.47614 * 15 13 4 28 28 H 1.09003 * 109.47365 * 300.00493 * 1 2 3 29 29 H 1.09004 * 109.47019 * 59.99981 * 1 2 3 30 30 H 1.08995 * 109.46947 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47526 * 239.99627 * 2 1 3 32 32 H 1.08997 * 109.46955 * 119.99331 * 2 1 3 33 33 H 1.09003 * 109.47402 * 59.99529 * 3 2 1 34 34 H 1.09007 * 109.46785 * 299.99592 * 3 2 1 35 35 H 0.97003 * 119.99678 * 180.02562 * 8 7 5 36 36 H 0.97000 * 118.29869 * 250.32475 * 17 15 13 37 37 H 1.08004 * 119.88760 * 0.56087 * 19 18 17 38 38 H 1.08006 * 119.85529 * 180.02562 * 20 19 18 39 39 H 1.07999 * 120.07974 * 179.72004 * 21 20 19 40 40 H 1.08002 * 119.98455 * 179.97438 * 22 21 20 41 41 H 0.96998 * 122.08410 * 118.68492 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1909 1.4425 1.1865 6 1 5.1033 0.8728 1.2829 7 6 3.7122 2.1754 2.2656 8 7 4.0912 1.8711 3.4865 9 14 2.5298 3.5932 1.9808 10 1 1.1338 3.1138 2.1434 11 1 2.8015 4.6700 2.9666 12 1 2.7142 4.1229 0.6057 13 6 4.1785 1.4427 -1.1680 14 8 3.5752 1.5360 -2.2161 15 6 5.6811 1.3268 -1.1711 16 1 5.9894 0.5215 -0.5044 17 7 6.1481 1.0469 -2.5266 18 6 6.1007 1.9775 -3.5609 19 6 6.1404 1.5209 -4.8777 20 6 6.1069 2.4177 -5.9247 21 6 6.0350 3.7765 -5.6772 22 6 5.9910 4.2373 -4.3737 23 6 6.0182 3.3430 -3.3241 24 16 5.9412 3.9356 -1.6607 25 8 7.0268 4.8376 -1.4957 26 8 4.5865 4.2848 -1.4118 27 7 6.2770 2.6002 -0.7185 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9563 -0.8901 35 1 3.7567 2.3825 4.2398 36 1 6.5061 0.1657 -2.7168 37 1 6.1976 0.4612 -5.0784 38 1 6.1376 2.0574 -6.9424 39 1 6.0135 4.4761 -6.4996 40 1 5.9353 5.2980 -4.1778 41 1 6.8291 2.6567 0.0771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104043094.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:17 Heat of formation + Delta-G solvation = -71.531973 kcal Electronic energy + Delta-G solvation = -29317.046352 eV Core-core repulsion = 25323.954484 eV Total energy + Delta-G solvation = -3993.091868 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.37960 -40.14992 -38.29794 -37.77917 -37.02153 -36.79623 -34.73654 -34.13311 -33.32501 -32.18683 -30.49583 -28.21252 -27.14923 -25.80113 -24.25354 -23.29618 -22.62929 -21.33106 -20.37477 -19.40858 -19.23877 -18.96239 -18.02299 -17.77622 -17.57473 -17.04945 -16.50757 -16.43336 -15.83891 -15.78836 -15.52442 -15.28455 -15.09431 -14.86342 -14.59097 -14.25919 -14.12672 -13.95916 -13.43644 -13.36522 -13.30469 -13.20553 -13.16013 -12.81898 -12.58588 -12.51781 -12.42685 -12.12859 -11.91636 -11.86520 -11.78558 -11.50401 -11.20233 -10.99777 -10.38645 -10.26789 -9.72521 -8.76757 -8.53964 -6.10148 -0.68115 -0.00557 0.48837 1.09560 1.25755 1.41777 1.54351 1.90425 2.06405 2.19704 2.41225 2.67182 2.69482 2.91558 3.62462 3.72950 3.83206 3.91265 4.05079 4.08892 4.16841 4.27168 4.38733 4.40372 4.46544 4.53857 4.56349 4.68165 4.85802 4.94863 4.97543 5.09300 5.23596 5.25722 5.31339 5.49030 5.49468 5.67852 5.90691 6.01007 6.12723 6.23487 6.57700 6.92819 7.36314 7.72556 8.58010 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014495 B = 0.005629 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.262946 B = 4972.970158 C = 5829.058550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C 0.095 3.905 4 N -0.454 5.454 5 C -0.332 4.332 6 H 0.115 0.885 7 C 0.051 3.949 8 N -0.881 5.881 9 Si 0.874 3.126 10 H -0.261 1.261 11 H -0.291 1.291 12 H -0.266 1.266 13 C 0.441 3.559 14 O -0.589 6.589 15 C 0.379 3.621 16 H 0.170 0.830 17 N -0.724 5.724 18 C 0.296 3.704 19 C -0.197 4.197 20 C -0.028 4.028 21 C -0.184 4.184 22 C -0.019 4.019 23 C -0.731 4.731 24 S 2.677 3.323 25 O -0.988 6.988 26 O -0.986 6.986 27 N -1.088 6.088 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.278 0.722 36 H 0.430 0.570 37 H 0.159 0.841 38 H 0.170 0.830 39 H 0.160 0.840 40 H 0.129 0.871 41 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.568 -4.803 -13.766 15.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C -0.028 4.028 4 N -0.175 5.175 5 C -0.460 4.460 6 H 0.132 0.868 7 C -0.155 4.155 8 N -0.518 5.518 9 Si 0.701 3.299 10 H -0.187 1.187 11 H -0.218 1.218 12 H -0.190 1.190 13 C 0.226 3.774 14 O -0.472 6.472 15 C 0.182 3.818 16 H 0.187 0.813 17 N -0.358 5.358 18 C 0.190 3.810 19 C -0.219 4.219 20 C -0.047 4.047 21 C -0.204 4.204 22 C -0.039 4.039 23 C -0.827 4.827 24 S 2.772 3.228 25 O -0.978 6.978 26 O -0.975 6.975 27 N -0.855 5.855 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.270 0.730 37 H 0.177 0.823 38 H 0.187 0.813 39 H 0.177 0.823 40 H 0.147 0.853 41 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 3.899 -3.777 -13.647 14.687 hybrid contribution -0.360 0.492 0.562 0.829 sum 3.539 -3.285 -13.085 13.948 Atomic orbital electron populations 1.21694 0.93863 1.02940 1.01661 1.21669 0.97030 0.95053 1.02055 1.21757 0.82045 0.98712 1.00260 1.43768 1.04554 1.63676 1.05464 1.19081 1.10766 1.29295 0.86828 0.86800 1.25438 0.97663 0.97381 0.94988 1.69749 1.44807 1.38803 0.98437 0.86970 0.81199 0.82529 0.79167 1.18712 1.21786 1.18997 1.21405 0.90934 0.81140 0.83969 1.90601 1.70386 1.54120 1.32108 1.20328 0.87730 0.89810 0.83950 0.81275 1.44610 1.68288 1.16433 1.06485 1.17237 0.87177 0.86734 0.89846 1.21309 1.08906 1.01980 0.89720 1.21607 0.90281 0.92495 1.00303 1.21396 1.06036 0.97272 0.95711 1.20690 0.91926 0.98200 0.93102 1.29416 1.29563 1.02011 1.21748 1.01974 0.73144 0.72776 0.74921 1.93534 1.55281 1.62278 1.86738 1.93649 1.37250 1.82027 1.84599 1.55336 1.66525 1.21965 1.41716 0.93095 0.92590 0.90234 0.92110 0.91642 0.92815 0.92516 0.91226 0.73004 0.82333 0.81259 0.82286 0.85278 0.72061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.24 9.91 71.98 0.71 -3.53 16 2 C -0.12 -4.36 6.26 30.60 0.19 -4.16 16 3 C 0.10 4.25 4.25 86.38 0.37 4.62 16 4 N -0.45 -20.82 2.18 -635.52 -1.39 -22.20 16 5 C -0.33 -15.78 8.79 84.04 0.74 -15.04 16 6 H 0.11 5.16 6.88 -2.91 -0.02 5.14 16 7 C 0.05 2.60 5.32 84.93 0.45 3.06 16 8 N -0.88 -46.31 13.96 21.66 0.30 -46.00 16 9 Si 0.87 43.49 24.98 68.60 1.71 45.21 16 10 H -0.26 -12.19 6.67 99.48 0.66 -11.53 16 11 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 12 H -0.27 -14.70 7.11 99.48 0.71 -13.99 16 13 C 0.44 18.96 5.53 87.66 0.48 19.45 16 14 O -0.59 -27.93 15.21 -3.06 -0.05 -27.97 16 15 C 0.38 12.57 3.40 128.52 0.44 13.00 16 16 H 0.17 4.50 7.14 -2.39 -0.02 4.49 16 17 N -0.72 -19.70 5.02 -331.40 -1.66 -21.37 16 18 C 0.30 9.05 5.52 38.40 0.21 9.26 16 19 C -0.20 -4.59 9.83 22.47 0.22 -4.37 16 20 C -0.03 -0.57 10.02 22.20 0.22 -0.34 16 21 C -0.18 -4.26 10.06 22.31 0.22 -4.03 16 22 C -0.02 -0.59 9.74 22.22 0.22 -0.38 16 23 C -0.73 -25.98 5.86 22.34 0.13 -25.85 16 24 S 2.68 109.71 5.53 -56.49 -0.31 109.40 16 25 O -0.99 -42.13 18.05 -128.06 -2.31 -44.45 16 26 O -0.99 -49.64 16.82 -128.06 -2.15 -51.80 16 27 N -1.09 -38.33 5.80 -179.33 -1.04 -39.37 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 32 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.05 2.51 3.18 -2.39 -0.01 2.51 16 34 H 0.06 2.67 7.36 -2.38 -0.02 2.65 16 35 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 36 H 0.43 7.94 8.79 -92.71 -0.81 7.12 16 37 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16 38 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 39 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 40 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 41 H 0.44 13.55 8.96 -94.78 -0.85 12.70 16 Total: -1.00 -75.21 346.46 -2.89 -78.11 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: -0.61 Total: 28.77 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 4.61 Total: -8.32 kcal Atomic # 7 Polarization: -125.15 SS G_CDS: -3.79 Total: -128.94 kcal Atomic # 8 Polarization: -119.71 SS G_CDS: -4.51 Total: -124.22 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.71 Total: 45.21 kcal Atomic # 16 Polarization: 109.71 SS G_CDS: -0.31 Total: 109.40 kcal Total: -75.21 -2.89 -78.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104043094.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.574 kcal (2) G-P(sol) polarization free energy of solvation -75.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds