Wall clock time and date at job start Tue Mar 31 2020 22:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47347 * 2 1 4 4 H 1.08994 * 109.47503 * 54.99907 * 3 2 1 5 5 C 1.50702 * 109.47479 * 175.00195 * 3 2 1 6 6 H 1.07996 * 120.00700 * 119.99627 * 5 3 2 7 7 C 1.37878 * 119.99425 * 299.99976 * 5 3 2 8 8 N 1.31510 * 120.00323 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99768 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47363 * 59.99902 * 9 7 5 11 11 H 1.48507 * 109.46969 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46836 * 299.99578 * 9 7 5 13 13 N 1.46503 * 109.47226 * 294.99905 * 3 2 1 14 14 C 1.34774 * 119.99919 * 84.99554 * 13 3 2 15 15 O 1.21676 * 120.00282 * 355.66629 * 14 13 3 16 16 C 1.46867 * 119.99813 * 175.93523 * 14 13 3 17 17 C 1.38671 * 120.50280 * 4.79139 * 16 14 13 18 18 C 1.39573 * 118.91137 * 180.02562 * 17 16 14 19 19 C 1.34839 * 120.84900 * 0.53524 * 18 17 16 20 20 N 1.36757 * 122.84379 * 0.37684 * 19 18 17 21 21 C 1.46531 * 116.25913 * 177.41383 * 20 19 18 22 22 C 1.53744 * 110.34625 * 143.81700 * 21 20 19 23 23 S 1.82069 * 106.92058 * 57.70621 * 22 21 20 24 24 O 1.42101 * 110.78802 * 197.85664 * 23 22 21 25 25 O 1.42104 * 110.81879 * 60.26673 * 23 22 21 26 26 N 1.65459 * 102.72205 * 309.05866 * 23 22 21 27 27 C 1.30821 * 122.29383 * 23.87799 * 26 23 22 28 28 H 1.08994 * 109.47067 * 300.00600 * 1 2 3 29 29 H 1.09001 * 109.46710 * 59.99963 * 1 2 3 30 30 H 1.08996 * 109.46893 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47300 * 239.99637 * 2 1 3 32 32 H 1.09001 * 109.46710 * 120.00037 * 2 1 3 33 33 H 0.97007 * 120.00302 * 180.02562 * 8 7 5 34 34 H 0.97001 * 119.99843 * 265.00485 * 13 3 2 35 35 H 1.07996 * 120.54426 * 0.09541 * 17 16 14 36 36 H 1.08000 * 119.57894 * 180.54843 * 18 17 16 37 37 H 1.08003 * 118.57903 * 180.35044 * 19 18 17 38 38 H 1.09004 * 109.25588 * 264.66571 * 21 20 19 39 39 H 1.09004 * 109.25660 * 24.10007 * 21 20 19 40 40 H 1.08998 * 110.24498 * 298.24783 * 22 21 20 41 41 H 1.09007 * 109.88127 * 176.96235 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5420 1.4443 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0050 0.8812 1.3818 10 1 6.4995 2.2814 1.3822 11 1 6.3978 0.2166 2.6504 12 1 6.5975 0.1472 0.2350 13 7 1.6525 2.0975 -1.2518 14 6 0.4353 2.6643 -1.3670 15 8 -0.3708 2.5641 -0.4611 16 6 0.0796 3.3981 -2.5885 17 6 0.9489 3.4307 -3.6684 18 6 0.5775 4.1386 -4.8125 19 6 -0.6010 4.7913 -4.8696 20 7 -1.4896 4.8099 -3.8302 21 6 -2.6999 5.6124 -4.0264 22 6 -3.9070 4.9302 -3.3621 23 16 -3.4959 4.7240 -1.6004 24 8 -4.3447 3.7591 -0.9941 25 8 -3.2545 5.9831 -0.9874 26 7 -2.0109 3.9964 -1.6556 27 6 -1.2158 4.1080 -2.6884 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8292 -0.0604 2.9503 34 1 2.2721 2.1230 -1.9978 35 1 1.8973 2.9160 -3.6252 36 1 1.2425 4.1637 -5.6631 37 1 -0.8540 5.3226 -5.7752 38 1 -2.5496 6.6014 -3.5935 39 1 -2.8949 5.7138 -5.0941 40 1 -4.0880 3.9567 -3.8176 41 1 -4.7915 5.5588 -3.4659 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183826261.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:02 Heat of formation + Delta-G solvation = -25.127924 kcal Electronic energy + Delta-G solvation = -27961.235855 eV Core-core repulsion = 23970.156218 eV Total energy + Delta-G solvation = -3991.079638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -41.33244 -38.76257 -36.90650 -35.89642 -35.65527 -35.16305 -34.30535 -32.45396 -31.63862 -30.72720 -29.43779 -26.89746 -25.46055 -24.87474 -23.01936 -22.54254 -20.78792 -19.47726 -19.11564 -18.40138 -17.91786 -17.38420 -16.86427 -16.46797 -15.87657 -15.48903 -15.48038 -15.22604 -14.93826 -14.42133 -14.33882 -13.86805 -13.75719 -13.32415 -12.79972 -12.73747 -12.61335 -12.45596 -12.13198 -11.91523 -11.83390 -11.80719 -11.51255 -11.40780 -11.16375 -10.96422 -10.93444 -10.76530 -10.33150 -10.26401 -10.06309 -9.69746 -9.47660 -8.97501 -8.71729 -8.41994 -8.17737 -7.66450 -6.05933 -4.15787 0.18334 0.23991 1.08632 1.66591 2.65554 2.87736 3.28500 3.34138 3.34921 3.42645 3.72994 3.91484 3.98424 4.04024 4.12924 4.27198 4.40644 4.41923 4.54409 4.65367 4.81702 4.90841 5.08532 5.13656 5.25136 5.35764 5.71626 5.88034 5.97770 6.22308 6.54382 6.63253 6.82369 7.04119 7.18660 7.35599 7.50381 7.56924 7.69684 7.84120 7.99326 8.26984 8.74434 8.85995 9.26623 9.51831 10.99180 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017052 B = 0.003451 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.615628 B = 8110.962325 C = 9044.643405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.274 3.726 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.880 5.880 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.708 5.708 14 C 0.541 3.459 15 O -0.487 6.487 16 C -0.144 4.144 17 C -0.004 4.004 18 C -0.198 4.198 19 C 0.121 3.879 20 N -0.514 5.514 21 C 0.104 3.896 22 C -0.688 4.688 23 S 2.539 3.461 24 O -0.935 6.935 25 O -0.963 6.963 26 N -0.897 5.897 27 C 0.522 3.478 28 H 0.051 0.949 29 H 0.043 0.957 30 H 0.019 0.981 31 H 0.029 0.971 32 H 0.097 0.903 33 H 0.265 0.735 34 H 0.382 0.618 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.169 0.831 38 H 0.109 0.891 39 H 0.119 0.881 40 H 0.139 0.861 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.950 10.242 -22.460 25.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.173 3.827 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.359 5.359 14 C 0.324 3.676 15 O -0.360 6.360 16 C -0.155 4.155 17 C -0.029 4.029 18 C -0.223 4.223 19 C -0.005 4.005 20 N -0.213 5.213 21 C -0.018 4.018 22 C -0.811 4.811 23 S 2.625 3.375 24 O -0.924 6.924 25 O -0.952 6.952 26 N -0.746 5.746 27 C 0.261 3.739 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.048 0.952 32 H 0.116 0.884 33 H 0.075 0.925 34 H 0.215 0.785 35 H 0.171 0.829 36 H 0.174 0.826 37 H 0.186 0.814 38 H 0.127 0.873 39 H 0.138 0.862 40 H 0.157 0.843 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.395 10.078 -19.940 24.237 hybrid contribution 1.019 0.346 -1.633 1.956 sum -8.377 10.423 -21.573 25.382 Atomic orbital electron populations 1.21877 0.98005 0.97852 1.01808 1.21934 0.92829 0.99687 1.02060 1.18782 0.94000 0.89223 0.80713 0.93186 1.21176 0.90693 1.39142 1.06300 0.92194 1.24878 0.98428 0.94890 0.95433 1.69892 1.35146 1.37423 1.09262 0.86540 0.85064 0.78225 0.77403 1.20243 1.21207 1.20244 1.46389 1.14155 1.56807 1.18536 1.17290 0.83547 0.80762 0.86027 1.90912 1.48221 1.57653 1.39258 1.21760 0.91748 1.03797 0.98175 1.22058 0.98202 0.91897 0.90727 1.20540 0.97365 1.03498 1.00861 1.22057 0.90019 0.97538 0.90847 1.45423 1.19941 1.42046 1.13851 1.21952 0.80420 0.94160 1.05263 1.31238 1.06198 1.10938 1.32740 1.07816 0.77639 0.75218 0.76835 1.93610 1.67020 1.59860 1.71934 1.93602 1.84565 1.44674 1.72331 1.75380 1.23404 1.47345 1.28509 1.19826 0.92040 0.82457 0.79576 0.92997 0.93830 0.96193 0.95188 0.88444 0.92517 0.78481 0.82929 0.82626 0.81401 0.87303 0.86241 0.84264 0.83387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.47 37.16 0.31 -2.93 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.86 2.24 -69.08 -0.15 6.71 16 4 H 0.05 1.47 7.64 -51.93 -0.40 1.08 16 5 C -0.53 -13.83 8.73 -34.44 -0.30 -14.13 16 6 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.76 11.29 55.43 0.63 -24.14 16 9 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 N -0.71 -14.20 4.97 -56.19 -0.28 -14.48 16 14 C 0.54 10.91 6.46 -12.77 -0.08 10.83 16 15 O -0.49 -12.05 11.81 5.21 0.06 -11.99 16 16 C -0.14 -2.12 6.08 -102.22 -0.62 -2.74 16 17 C 0.00 -0.04 9.61 -38.92 -0.37 -0.41 16 18 C -0.20 -1.05 9.91 -40.29 -0.40 -1.45 16 19 C 0.12 0.56 10.03 -16.56 -0.17 0.39 16 20 N -0.51 -4.29 3.01 -113.88 -0.34 -4.64 16 21 C 0.10 0.58 6.25 -3.64 -0.02 0.56 16 22 C -0.69 -5.33 6.83 37.54 0.26 -5.08 16 23 S 2.54 39.55 6.04 -107.50 -0.65 38.90 16 24 O -0.93 -18.46 18.11 -57.50 -1.04 -19.50 16 25 O -0.96 -17.56 18.11 -57.50 -1.04 -18.60 16 26 N -0.90 -16.23 8.50 32.43 0.28 -15.95 16 27 C 0.52 7.37 7.43 -154.77 -1.15 6.22 16 28 H 0.05 1.32 7.80 -51.93 -0.40 0.92 16 29 H 0.04 1.00 5.54 -51.93 -0.29 0.71 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.38 6.23 6.61 -40.82 -0.27 5.96 16 35 H 0.15 1.16 6.46 -52.49 -0.34 0.82 16 36 H 0.16 0.29 8.06 -52.49 -0.42 -0.13 16 37 H 0.17 -0.04 7.73 -52.48 -0.41 -0.44 16 38 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.12 0.13 7.66 -51.93 -0.40 -0.27 16 40 H 0.14 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.15 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 345.69 15.07 5.21 5.21 Total: -1.00 -41.02 345.69 -10.03 -51.05 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -4.89 Total: 2.37 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -2.94 Total: -3.59 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: 0.28 Total: -59.20 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -2.02 Total: -50.09 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 39.55 SS G_CDS: -0.65 Total: 38.90 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -41.02 -10.03 -51.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183826261.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.923 kcal (2) G-P(sol) polarization free energy of solvation -41.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds