Wall clock time and date at job start Tue Mar 31 2020 22:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47239 * 2 1 4 4 H 1.09001 * 109.47015 * 304.99670 * 3 2 1 5 5 C 1.50694 * 109.47581 * 184.99962 * 3 2 1 6 6 H 1.08005 * 120.00231 * 239.99801 * 5 3 2 7 7 C 1.37885 * 120.00241 * 59.99615 * 5 3 2 8 8 N 1.31511 * 119.99478 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00101 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47084 * 90.00338 * 9 7 5 11 11 H 1.48505 * 109.46738 * 209.99623 * 9 7 5 12 12 H 1.48500 * 109.47199 * 329.99954 * 9 7 5 13 13 N 1.46498 * 109.47217 * 64.99766 * 3 2 1 14 14 C 1.34780 * 119.99772 * 274.99991 * 13 3 2 15 15 O 1.21633 * 120.00388 * 0.02562 * 14 13 3 16 16 C 1.47282 * 119.99738 * 179.97438 * 14 13 3 17 17 C 1.37308 * 120.54860 * 179.72034 * 16 14 13 18 18 N 1.35964 * 121.62505 * 180.20311 * 17 16 14 19 19 C 1.46666 * 115.61856 * 182.91912 * 18 17 16 20 20 C 1.53126 * 110.51588 * 216.68870 * 19 18 17 21 21 S 1.82052 * 107.04567 * 302.24489 * 20 19 18 22 22 O 1.42097 * 110.78500 * 161.71138 * 21 20 19 23 23 O 1.42109 * 110.78007 * 299.24609 * 21 20 19 24 24 N 1.65357 * 102.76816 * 50.49927 * 21 20 19 25 25 C 1.31309 * 122.52387 * 336.35723 * 24 21 20 26 26 C 1.42842 * 114.93666 * 180.09772 * 25 24 21 27 27 C 1.34950 * 120.55715 * 182.96243 * 26 25 24 28 28 H 1.09004 * 109.47065 * 60.00488 * 1 2 3 29 29 H 1.08998 * 109.47242 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47117 * 300.00117 * 1 2 3 31 31 H 1.08995 * 109.47552 * 239.99678 * 2 1 3 32 32 H 1.09004 * 109.47065 * 119.99512 * 2 1 3 33 33 H 0.97000 * 120.00079 * 180.02562 * 8 7 5 34 34 H 0.97002 * 120.00264 * 95.00306 * 13 3 2 35 35 H 1.07995 * 119.18531 * 0.21387 * 17 16 14 36 36 H 1.09000 * 109.27157 * 336.96338 * 19 18 17 37 37 H 1.08998 * 109.26446 * 96.46156 * 19 18 17 38 38 H 1.09001 * 109.93633 * 61.62728 * 20 19 18 39 39 H 1.08996 * 109.93582 * 182.85669 * 20 19 18 40 40 H 1.08001 * 119.71944 * 2.93676 * 26 25 24 41 41 H 1.08006 * 120.77399 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8801 -1.3810 10 1 6.5539 -0.3519 -0.7597 11 1 6.3835 0.9214 -2.8164 12 1 6.5575 2.0721 -0.6889 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6644 1.3668 15 8 -0.3419 2.6318 0.4315 16 6 0.0452 3.3224 2.6255 17 6 -1.1899 3.9086 2.7531 18 7 -1.5709 4.5254 3.9033 19 6 -2.9412 5.0481 3.9187 20 6 -3.0027 6.3697 4.6897 21 16 -2.3796 6.0382 6.3678 22 8 -2.0055 7.2468 7.0147 23 8 -3.1874 5.0702 7.0235 24 7 -0.9489 5.2609 6.0794 25 6 -0.7069 4.6201 4.9591 26 6 0.5802 4.0052 4.8829 27 6 0.9706 3.3679 3.7593 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8293 -0.0611 -2.9498 34 1 2.2718 2.1232 1.9978 35 1 -1.8757 3.8788 1.9193 36 1 -3.2747 5.2134 2.8943 37 1 -3.5977 4.3219 4.3979 38 1 -2.3753 7.1149 4.2006 39 1 -4.0324 6.7238 4.7386 40 1 1.2466 4.0512 5.7315 41 1 1.9431 2.9021 3.6977 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183929149.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:18 Heat of formation + Delta-G solvation = -42.840700 kcal Electronic energy + Delta-G solvation = -27117.492100 eV Core-core repulsion = 23125.644379 eV Total energy + Delta-G solvation = -3991.847721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -41.57423 -39.21615 -37.16774 -36.01929 -35.69322 -35.40329 -34.86630 -32.62618 -31.77189 -31.04485 -29.65760 -27.16137 -25.62977 -24.49499 -23.57231 -22.92445 -20.82558 -19.79042 -19.31268 -18.66429 -18.12309 -17.59669 -16.87453 -16.61903 -16.07943 -15.74992 -15.61795 -15.42857 -15.03077 -14.65057 -14.59578 -14.06929 -13.96826 -13.68356 -13.19816 -12.85960 -12.81577 -12.66896 -12.32523 -12.20031 -12.11588 -12.05948 -11.69494 -11.36278 -11.33942 -11.21116 -11.09723 -10.92268 -10.58621 -10.43664 -10.31233 -9.99921 -9.77303 -9.43379 -9.17719 -8.62295 -8.42033 -8.00991 -6.23381 -4.33481 0.00336 0.31623 0.65853 1.56011 2.54306 2.64865 3.17661 3.25461 3.26450 3.31454 3.51272 3.66300 3.74467 3.93749 3.97519 4.20545 4.29663 4.32498 4.42387 4.61795 4.67683 4.80200 4.96310 5.02777 5.08970 5.38473 5.58965 5.74979 5.89274 6.11398 6.27338 6.32617 6.52428 6.76149 6.90814 7.05045 7.17716 7.25398 7.47795 7.58228 7.75782 8.04971 8.42909 8.61386 8.86811 9.34113 10.81870 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025201 B = 0.002511 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.811687 B =11149.986961 C =11774.971388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.271 3.729 4 H 0.052 0.948 5 C -0.538 4.538 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.695 5.695 14 C 0.557 3.443 15 O -0.547 6.547 16 C -0.200 4.200 17 C 0.167 3.833 18 N -0.506 5.506 19 C 0.097 3.903 20 C -0.681 4.681 21 S 2.552 3.448 22 O -0.944 6.944 23 O -0.964 6.964 24 N -0.970 5.970 25 C 0.517 3.483 26 C -0.159 4.159 27 C 0.001 3.999 28 H 0.050 0.950 29 H 0.023 0.977 30 H 0.037 0.963 31 H 0.100 0.900 32 H 0.033 0.967 33 H 0.265 0.735 34 H 0.389 0.611 35 H 0.187 0.813 36 H 0.127 0.873 37 H 0.112 0.888 38 H 0.141 0.859 39 H 0.152 0.848 40 H 0.168 0.832 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.051 7.297 9.568 15.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C 0.170 3.830 4 H 0.070 0.930 5 C -0.576 4.576 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.342 5.342 14 C 0.342 3.658 15 O -0.428 6.428 16 C -0.210 4.210 17 C 0.040 3.960 18 N -0.201 5.201 19 C -0.025 4.025 20 C -0.805 4.805 21 S 2.639 3.361 22 O -0.933 6.933 23 O -0.953 6.953 24 N -0.826 5.826 25 C 0.262 3.738 26 C -0.183 4.183 27 C -0.024 4.024 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.119 0.881 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.222 0.778 35 H 0.204 0.796 36 H 0.145 0.855 37 H 0.130 0.870 38 H 0.159 0.841 39 H 0.170 0.830 40 H 0.185 0.815 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.853 7.720 10.346 16.864 hybrid contribution 0.713 0.096 -0.899 1.151 sum -10.140 7.816 9.447 15.911 Atomic orbital electron populations 1.21844 0.98340 0.98208 1.01117 1.21951 0.92627 0.99646 1.02529 1.18867 0.94416 0.89231 0.80500 0.92994 1.21198 0.90513 1.39426 1.06470 0.91967 1.24874 0.98687 0.94676 0.95318 1.69879 1.35251 1.37331 1.09347 0.86451 0.84701 0.78523 0.77461 1.20493 1.21074 1.19797 1.46435 1.13980 1.54965 1.18836 1.17418 0.83375 0.79364 0.85647 1.90797 1.51556 1.60747 1.39680 1.21028 0.94843 1.07619 0.97510 1.22422 0.96905 0.89191 0.87509 1.45143 1.14020 1.48070 1.12843 1.21998 0.80234 0.94135 1.06138 1.31080 1.15903 1.04671 1.28854 1.07135 0.75652 0.76181 0.77139 1.93595 1.81542 1.46984 1.71221 1.93611 1.70709 1.59637 1.71326 1.75205 1.43034 1.38555 1.25775 1.19161 0.88937 0.84922 0.80802 1.21395 0.93622 1.02370 1.00923 1.22703 0.98619 0.90805 0.90258 0.93098 0.95753 0.94354 0.88147 0.94855 0.92447 0.77779 0.79568 0.85461 0.86984 0.84061 0.82980 0.81461 0.82609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.51 37.15 0.32 -2.40 16 2 C -0.13 -2.81 5.45 -26.74 -0.15 -2.96 16 3 C 0.27 6.03 2.24 -69.09 -0.15 5.87 16 4 H 0.05 1.35 7.58 -51.93 -0.39 0.96 16 5 C -0.54 -12.87 8.73 -34.44 -0.30 -13.17 16 6 H 0.06 1.41 7.74 -52.48 -0.41 1.01 16 7 C 0.07 1.70 5.29 -17.82 -0.09 1.60 16 8 N -0.88 -23.06 11.29 55.43 0.63 -22.43 16 9 Si 0.90 19.30 29.54 -169.99 -5.02 14.28 16 10 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 13 N -0.70 -11.92 4.98 -56.06 -0.28 -12.20 16 14 C 0.56 8.78 6.33 -12.58 -0.08 8.70 16 15 O -0.55 -10.30 13.44 5.25 0.07 -10.23 16 16 C -0.20 -2.23 6.00 -103.26 -0.62 -2.85 16 17 C 0.17 1.49 9.67 -16.06 -0.16 1.34 16 18 N -0.51 -4.22 2.99 -115.35 -0.34 -4.56 16 19 C 0.10 0.55 6.20 -3.89 -0.02 0.52 16 20 C -0.68 -4.28 6.81 37.22 0.25 -4.03 16 21 S 2.55 30.13 6.04 -107.50 -0.65 29.48 16 22 O -0.94 -14.55 18.11 -57.50 -1.04 -15.59 16 23 O -0.96 -14.16 18.12 -57.50 -1.04 -15.20 16 24 N -0.97 -12.09 10.54 31.29 0.33 -11.76 16 25 C 0.52 5.42 7.29 -156.65 -1.14 4.27 16 26 C -0.16 -1.47 9.76 -38.97 -0.38 -1.85 16 27 C 0.00 0.01 9.73 -37.46 -0.36 -0.36 16 28 H 0.05 1.07 7.84 -51.93 -0.41 0.67 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.71 5.64 -51.93 -0.29 0.42 16 31 H 0.10 2.48 5.95 -51.93 -0.31 2.17 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 34 H 0.39 5.54 6.68 -40.82 -0.27 5.27 16 35 H 0.19 1.36 7.21 -52.49 -0.38 0.98 16 36 H 0.13 0.34 7.61 -51.93 -0.40 -0.06 16 37 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.14 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.15 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.16 1.09 6.64 -52.48 -0.35 0.74 16 LS Contribution 348.36 15.07 5.25 5.25 Total: -1.00 -34.87 348.36 -9.87 -44.73 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -4.87 Total: 3.54 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -2.89 Total: -5.30 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: 0.33 Total: -50.96 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -2.01 Total: -41.02 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Atomic # 16 Polarization: 30.13 SS G_CDS: -0.65 Total: 29.48 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.87 -9.87 -44.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183929149.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.892 kcal (2) G-P(sol) polarization free energy of solvation -34.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds