Wall clock time and date at job start Tue Mar 31 2020 22:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47239 * 2 1 4 4 H 1.09001 * 109.47015 * 304.99670 * 3 2 1 5 5 C 1.50694 * 109.47581 * 184.99962 * 3 2 1 6 6 H 1.08005 * 120.00231 * 239.99801 * 5 3 2 7 7 C 1.37885 * 120.00241 * 59.99615 * 5 3 2 8 8 N 1.31511 * 119.99478 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00101 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47084 * 90.00338 * 9 7 5 11 11 H 1.48505 * 109.46738 * 209.99623 * 9 7 5 12 12 H 1.48500 * 109.47199 * 329.99954 * 9 7 5 13 13 N 1.46498 * 109.47217 * 64.99766 * 3 2 1 14 14 C 1.34780 * 119.99772 * 274.99991 * 13 3 2 15 15 O 1.21633 * 120.00388 * 0.02562 * 14 13 3 16 16 C 1.47282 * 119.99738 * 179.97438 * 14 13 3 17 17 C 1.37308 * 120.54860 * 179.72034 * 16 14 13 18 18 N 1.35964 * 121.62505 * 180.20311 * 17 16 14 19 19 C 1.46666 * 115.61856 * 182.91912 * 18 17 16 20 20 C 1.53126 * 110.51588 * 216.68870 * 19 18 17 21 21 S 1.82052 * 107.04567 * 302.24489 * 20 19 18 22 22 O 1.42097 * 110.78500 * 161.71138 * 21 20 19 23 23 O 1.42109 * 110.78007 * 299.24609 * 21 20 19 24 24 N 1.65357 * 102.76816 * 50.49927 * 21 20 19 25 25 C 1.31309 * 122.52387 * 336.35723 * 24 21 20 26 26 C 1.42842 * 114.93666 * 180.09772 * 25 24 21 27 27 C 1.34950 * 120.55715 * 182.96243 * 26 25 24 28 28 H 1.09004 * 109.47065 * 60.00488 * 1 2 3 29 29 H 1.08998 * 109.47242 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47117 * 300.00117 * 1 2 3 31 31 H 1.08995 * 109.47552 * 239.99678 * 2 1 3 32 32 H 1.09004 * 109.47065 * 119.99512 * 2 1 3 33 33 H 0.97000 * 120.00079 * 180.02562 * 8 7 5 34 34 H 0.97002 * 120.00264 * 95.00306 * 13 3 2 35 35 H 1.07995 * 119.18531 * 0.21387 * 17 16 14 36 36 H 1.09000 * 109.27157 * 336.96338 * 19 18 17 37 37 H 1.08998 * 109.26446 * 96.46156 * 19 18 17 38 38 H 1.09001 * 109.93633 * 61.62728 * 20 19 18 39 39 H 1.08996 * 109.93582 * 182.85669 * 20 19 18 40 40 H 1.08001 * 119.71944 * 2.93676 * 26 25 24 41 41 H 1.08006 * 120.77399 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8801 -1.3810 10 1 6.5539 -0.3519 -0.7597 11 1 6.3835 0.9214 -2.8164 12 1 6.5575 2.0721 -0.6889 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6644 1.3668 15 8 -0.3419 2.6318 0.4315 16 6 0.0452 3.3224 2.6255 17 6 -1.1899 3.9086 2.7531 18 7 -1.5709 4.5254 3.9033 19 6 -2.9412 5.0481 3.9187 20 6 -3.0027 6.3697 4.6897 21 16 -2.3796 6.0382 6.3678 22 8 -2.0055 7.2468 7.0147 23 8 -3.1874 5.0702 7.0235 24 7 -0.9489 5.2609 6.0794 25 6 -0.7069 4.6201 4.9591 26 6 0.5802 4.0052 4.8829 27 6 0.9706 3.3679 3.7593 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8293 -0.0611 -2.9498 34 1 2.2718 2.1232 1.9978 35 1 -1.8757 3.8788 1.9193 36 1 -3.2747 5.2134 2.8943 37 1 -3.5977 4.3219 4.3979 38 1 -2.3753 7.1149 4.2006 39 1 -4.0324 6.7238 4.7386 40 1 1.2466 4.0512 5.7315 41 1 1.9431 2.9021 3.6977 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183929149.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:17 Heat of formation + Delta-G solvation = -69.211955 kcal Electronic energy + Delta-G solvation = -27118.635644 eV Core-core repulsion = 23125.644379 eV Total energy + Delta-G solvation = -3992.991265 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.32748 -40.50445 -38.16638 -37.03693 -36.94708 -36.35629 -35.79630 -34.24884 -32.88650 -32.21779 -30.59564 -28.84213 -26.27383 -25.59452 -24.62291 -24.17214 -22.12014 -21.22000 -20.21418 -19.70637 -19.03476 -18.61997 -17.89012 -17.39073 -17.27381 -17.05764 -16.67909 -16.44315 -16.17698 -16.07198 -15.62925 -15.03144 -14.78148 -14.53076 -14.51919 -14.03238 -13.83465 -13.55243 -13.42900 -13.40655 -13.26146 -13.14652 -13.09829 -12.89221 -12.78092 -12.62601 -12.20687 -12.12014 -12.00615 -11.98414 -11.50894 -11.27745 -10.97960 -10.80139 -10.74225 -10.46750 -9.62157 -9.15078 -8.11180 -6.26930 -0.81433 -0.39614 -0.18007 0.88092 1.48860 1.50881 1.59390 1.69788 1.83774 2.37898 2.56469 2.59896 2.67798 2.90570 3.19611 3.26519 3.40442 3.57084 3.63961 3.79686 3.91346 4.03806 4.12514 4.33279 4.48741 4.59758 4.67162 4.67234 4.81459 4.88076 5.01539 5.16371 5.18836 5.33675 5.40317 5.51789 5.63782 5.67460 5.88224 5.98496 6.02072 6.24674 6.81685 7.01738 7.39413 7.59458 8.93731 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025201 B = 0.002511 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.811687 B =11149.986961 C =11774.971388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.124 4.124 3 C 0.281 3.719 4 H 0.006 0.994 5 C -0.545 4.545 6 H 0.074 0.926 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.963 3.037 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.264 1.264 13 N -0.697 5.697 14 C 0.561 3.439 15 O -0.581 6.581 16 C -0.223 4.223 17 C 0.198 3.802 18 N -0.499 5.499 19 C 0.082 3.918 20 C -0.646 4.646 21 S 2.544 3.456 22 O -0.994 6.994 23 O -1.005 7.005 24 N -1.002 6.002 25 C 0.508 3.492 26 C -0.166 4.166 27 C 0.014 3.986 28 H 0.029 0.971 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.041 0.959 33 H 0.263 0.737 34 H 0.404 0.596 35 H 0.210 0.790 36 H 0.173 0.827 37 H 0.125 0.875 38 H 0.158 0.842 39 H 0.189 0.811 40 H 0.177 0.823 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.706 7.934 9.727 16.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.163 4.163 3 C 0.178 3.822 4 H 0.024 0.976 5 C -0.583 4.583 6 H 0.092 0.908 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.788 3.212 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.188 1.188 13 N -0.346 5.346 14 C 0.348 3.652 15 O -0.464 6.464 16 C -0.233 4.233 17 C 0.069 3.931 18 N -0.193 5.193 19 C -0.039 4.039 20 C -0.777 4.777 21 S 2.638 3.362 22 O -0.984 6.984 23 O -0.994 6.994 24 N -0.859 5.859 25 C 0.254 3.746 26 C -0.190 4.190 27 C -0.010 4.010 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.240 0.760 35 H 0.227 0.773 36 H 0.190 0.810 37 H 0.143 0.857 38 H 0.176 0.824 39 H 0.207 0.793 40 H 0.194 0.806 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -11.486 8.363 10.617 17.737 hybrid contribution 0.790 -0.049 -1.022 1.293 sum -10.696 8.314 9.595 16.601 Atomic orbital electron populations 1.21685 0.96718 0.99107 1.00599 1.21804 0.94023 0.99192 1.01266 1.18363 0.93409 0.89161 0.81315 0.97619 1.21607 0.91675 1.38570 1.06493 0.90800 1.25669 1.02654 0.94630 0.95258 1.70031 1.36809 1.38494 1.09894 0.85486 0.79961 0.78798 0.76934 1.20029 1.21737 1.18824 1.46118 1.15272 1.55456 1.17720 1.17871 0.82199 0.78392 0.86700 1.90781 1.52304 1.61891 1.41418 1.20538 0.96692 1.09877 0.96145 1.22664 0.96138 0.86582 0.87684 1.45298 1.14859 1.47271 1.11878 1.22525 0.78744 0.93751 1.08857 1.30755 1.18120 1.05871 1.22933 1.06802 0.75324 0.74943 0.79138 1.93530 1.82401 1.48233 1.74237 1.93559 1.71262 1.60510 1.74036 1.75142 1.43875 1.39740 1.27136 1.19353 0.89683 0.84737 0.80802 1.21506 0.93619 1.02508 1.01334 1.22770 0.98879 0.90162 0.89210 0.95195 0.94065 0.93163 0.91304 0.94061 0.92757 0.76016 0.77338 0.80967 0.85662 0.82375 0.79297 0.80598 0.80856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.85 8.51 71.98 0.61 -4.23 16 2 C -0.12 -5.45 5.45 30.59 0.17 -5.28 16 3 C 0.28 12.62 2.24 44.24 0.10 12.72 16 4 H 0.01 0.32 7.58 -2.39 -0.02 0.30 16 5 C -0.55 -26.03 8.73 25.60 0.22 -25.81 16 6 H 0.07 3.26 7.74 -2.91 -0.02 3.24 16 7 C 0.02 0.91 5.29 84.66 0.45 1.36 16 8 N -0.91 -49.04 11.29 21.45 0.24 -48.80 16 9 Si 0.96 39.46 29.54 68.60 2.03 41.49 16 10 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 11 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 13 N -0.70 -23.30 4.98 -449.51 -2.24 -25.54 16 14 C 0.56 16.90 6.33 86.62 0.55 17.45 16 15 O -0.58 -21.40 13.44 -4.13 -0.06 -21.45 16 16 C -0.22 -4.40 6.00 -18.99 -0.11 -4.52 16 17 C 0.20 2.81 9.67 83.83 0.81 3.63 16 18 N -0.50 -6.56 2.99 -518.87 -1.55 -8.11 16 19 C 0.08 0.53 6.20 86.39 0.54 1.07 16 20 C -0.65 -5.52 6.81 72.02 0.49 -5.03 16 21 S 2.54 58.16 6.04 -56.49 -0.34 57.82 16 22 O -0.99 -31.16 18.11 -127.69 -2.31 -33.47 16 23 O -1.00 -29.43 18.12 -127.69 -2.31 -31.74 16 24 N -1.00 -24.26 10.54 -54.91 -0.58 -24.84 16 25 C 0.51 9.62 7.29 135.08 0.98 10.61 16 26 C -0.17 -2.74 9.76 22.67 0.22 -2.52 16 27 C 0.01 0.22 9.73 23.65 0.23 0.45 16 28 H 0.03 1.27 7.84 -2.39 -0.02 1.25 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.82 5.64 -2.39 -0.01 1.80 16 31 H 0.07 3.50 5.95 -2.39 -0.01 3.48 16 32 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 34 H 0.40 10.86 6.68 -92.71 -0.62 10.24 16 35 H 0.21 2.08 7.21 -2.91 -0.02 2.06 16 36 H 0.17 -0.25 7.61 -2.39 -0.02 -0.27 16 37 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.16 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.19 0.35 8.14 -2.39 -0.02 0.34 16 40 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 41 H 0.17 1.99 6.64 -2.91 -0.02 1.97 16 Total: -1.00 -80.28 348.36 -1.40 -81.68 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.47 Total: 13.07 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 5.26 Total: -0.11 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -4.13 Total: -107.28 kcal Atomic # 8 Polarization: -81.98 SS G_CDS: -4.68 Total: -86.66 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Atomic # 16 Polarization: 58.16 SS G_CDS: -0.34 Total: 57.82 kcal Total: -80.28 -1.40 -81.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183929149.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.464 kcal (2) G-P(sol) polarization free energy of solvation -80.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds