Wall clock time and date at job start Tue Mar 31 2020 22:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48494 * 109.47013 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48501 * 109.47288 * 59.99489 * 9 7 5 13 13 N 1.46500 * 109.47386 * 294.27869 * 3 2 1 14 14 C 1.34781 * 119.99868 * 84.99941 * 13 3 2 15 15 O 1.21278 * 119.99962 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00075 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.47297 * 179.97438 * 16 14 13 18 18 C 1.38259 * 119.93745 * 90.00038 * 17 16 14 19 19 C 1.38284 * 120.09576 * 180.02562 * 18 17 16 20 20 Cl 1.73602 * 119.97497 * 180.02562 * 19 18 17 21 21 C 1.38804 * 120.05067 * 0.02562 * 19 18 17 22 22 C 1.38920 * 119.80901 * 359.87013 * 21 19 18 23 23 C 1.38183 * 119.93871 * 269.72715 * 17 16 14 24 24 O 1.36117 * 120.77982 * 180.24381 * 22 21 19 25 25 C 1.43167 * 116.69771 * 342.58173 * 24 22 21 26 26 C 1.53471 * 108.23036 * 46.29984 * 25 24 22 27 27 O 1.36130 * 119.39840 * 179.62310 * 21 19 18 28 28 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 29 29 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 31 31 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 32 32 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 33 33 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 34 34 H 0.96991 * 119.99750 * 264.99899 * 13 3 2 35 35 H 1.08999 * 109.47016 * 300.00283 * 16 14 13 36 36 H 1.09007 * 109.47002 * 59.99685 * 16 14 13 37 37 H 1.08002 * 119.94999 * 0.02562 * 18 17 16 38 38 H 1.07994 * 119.96069 * 0.02562 * 23 17 16 39 39 H 1.09003 * 109.71530 * 165.98660 * 25 24 22 40 40 H 1.08997 * 109.71579 * 286.61616 * 25 24 22 41 41 H 1.09003 * 109.70773 * 59.97961 * 26 25 24 42 42 H 1.09002 * 109.71029 * 180.59864 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0190 0.5167 4.0089 11 1 2.8198 2.4705 3.2175 12 1 1.9371 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3910 15 8 -0.3344 2.6299 -0.4676 16 6 0.0681 3.3275 -2.6859 17 6 -1.3313 3.8752 -2.5735 18 6 -1.5332 5.1641 -2.1157 19 6 -2.8160 5.6697 -2.0107 20 17 -3.0657 7.2888 -1.4362 21 6 -3.9040 4.8838 -2.3645 22 6 -3.7000 3.5897 -2.8264 23 6 -2.4101 3.0902 -2.9335 24 8 -4.7523 2.8035 -3.1834 25 6 -6.0434 3.2037 -2.7116 26 6 -6.1996 4.7101 -2.9603 27 8 -5.1614 5.3923 -2.2486 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.8117 0.4042 0.4384 34 1 2.2955 2.1149 -1.9976 35 1 0.7620 4.1422 -2.8932 36 1 0.1092 2.6000 -3.4966 37 1 -0.6877 5.7768 -1.8396 38 1 -2.2491 2.0852 -3.2946 39 1 -6.8175 2.6595 -3.2527 40 1 -6.1254 2.9968 -1.6446 41 1 -6.1117 4.9177 -4.0267 42 1 -7.1728 5.0432 -2.5994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183948236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:22 Heat of formation + Delta-G solvation = -119.555381 kcal Electronic energy + Delta-G solvation = -27187.156580 eV Core-core repulsion = 23157.645803 eV Total energy + Delta-G solvation = -4029.510777 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.107 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.34330 -40.83879 -39.06334 -38.39134 -37.41949 -36.88487 -34.43786 -33.72062 -32.81580 -31.80758 -30.42566 -29.23688 -27.89802 -25.54235 -24.32663 -23.82933 -22.50267 -21.51187 -21.08313 -19.87827 -19.57479 -18.52947 -18.30250 -17.74304 -17.07781 -16.67395 -16.51623 -16.06006 -15.77983 -15.63037 -15.41952 -15.31745 -15.24205 -14.68927 -14.56310 -14.44252 -14.24388 -14.03516 -13.59388 -13.34092 -13.09913 -12.93588 -12.65308 -12.59732 -12.46954 -12.27090 -12.05514 -11.98641 -11.82932 -11.75403 -11.56266 -11.54478 -11.20015 -10.65150 -10.38463 -9.71103 -9.54731 -9.16137 -8.78101 -6.37396 -0.01219 0.10816 1.02325 1.47030 1.49010 1.69756 1.88799 1.94009 2.13901 2.36209 2.43280 2.78224 2.95414 3.25268 3.57716 3.66780 3.88680 3.98709 4.12901 4.17779 4.18969 4.21491 4.34941 4.43515 4.50093 4.57678 4.59653 4.64972 4.70253 4.80032 4.89391 4.92275 5.12234 5.25958 5.32936 5.36269 5.41927 5.58640 5.76150 5.76412 5.77585 6.06575 6.24851 6.59347 6.96680 7.30767 7.57237 8.58273 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017156 B = 0.002902 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.737678 B = 9647.154597 C =10255.905779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C 0.256 3.744 4 H 0.018 0.982 5 C -0.623 4.623 6 H 0.045 0.955 7 C 0.007 3.993 8 N -0.918 5.918 9 Si 1.060 2.940 10 H -0.282 1.282 11 H -0.275 1.275 12 H -0.258 1.258 13 N -0.704 5.704 14 C 0.501 3.499 15 O -0.578 6.578 16 C -0.091 4.091 17 C -0.046 4.046 18 C -0.100 4.100 19 C -0.044 4.044 20 Cl -0.055 7.055 21 C 0.047 3.953 22 C 0.055 3.945 23 C -0.101 4.101 24 O -0.315 6.315 25 C 0.012 3.988 26 C 0.014 3.986 27 O -0.313 6.313 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.263 0.737 34 H 0.405 0.595 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.160 0.840 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.962 7.938 -13.600 27.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.166 4.166 3 C 0.151 3.849 4 H 0.035 0.965 5 C -0.661 4.661 6 H 0.063 0.937 7 C -0.196 4.196 8 N -0.551 5.551 9 Si 0.883 3.117 10 H -0.207 1.207 11 H -0.201 1.201 12 H -0.182 1.182 13 N -0.353 5.353 14 C 0.288 3.712 15 O -0.458 6.458 16 C -0.131 4.131 17 C -0.047 4.047 18 C -0.119 4.119 19 C -0.072 4.072 20 Cl -0.026 7.026 21 C 0.001 3.999 22 C 0.009 3.991 23 C -0.119 4.119 24 O -0.230 6.230 25 C -0.062 4.062 26 C -0.060 4.060 27 O -0.228 6.228 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.239 0.761 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.167 0.833 38 H 0.167 0.833 39 H 0.177 0.823 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -23.461 7.758 -11.281 27.164 hybrid contribution 0.514 0.419 -1.670 1.797 sum -22.947 8.178 -12.952 27.590 Atomic orbital electron populations 1.21754 0.95616 1.00084 1.01428 1.22112 0.95138 0.98584 1.00802 1.18646 0.93286 0.89384 0.83610 0.96461 1.22177 0.91604 1.48417 1.03891 0.93711 1.26569 0.96715 0.91453 1.04854 1.70955 1.15089 1.38998 1.30094 0.83803 0.75791 0.78188 0.73915 1.20734 1.20101 1.18243 1.46085 1.15682 1.56482 1.17097 1.21047 0.81455 0.78413 0.90252 1.90688 1.51431 1.60574 1.43103 1.20702 0.93533 1.03069 0.95754 1.19043 0.94634 0.92719 0.98317 1.20896 0.94966 0.96258 0.99810 1.20164 0.92588 0.87765 1.06634 1.98350 1.97184 1.19668 1.87375 1.18531 0.85733 0.91421 1.04261 1.18701 0.89417 0.88511 1.02459 1.20545 0.88637 1.00920 1.01840 1.86311 1.15351 1.49568 1.71747 1.24008 0.83454 0.96588 1.02155 1.24028 0.91596 0.92089 0.98288 1.86357 1.13627 1.53901 1.68910 0.92700 0.92902 0.94706 0.92624 0.93596 0.92825 0.76051 0.85121 0.84726 0.83332 0.83271 0.82300 0.90698 0.89534 0.82715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.07 8.53 71.98 0.61 -4.46 16 2 C -0.13 -5.49 5.37 30.60 0.16 -5.33 16 3 C 0.26 11.78 1.84 44.25 0.08 11.86 16 4 H 0.02 0.90 6.12 -2.39 -0.01 0.88 16 5 C -0.62 -33.12 8.92 25.60 0.23 -32.89 16 6 H 0.04 2.49 7.96 -2.91 -0.02 2.47 16 7 C 0.01 0.40 5.15 84.66 0.44 0.83 16 8 N -0.92 -54.54 13.70 21.45 0.29 -54.24 16 9 Si 1.06 50.54 26.56 68.60 1.82 52.36 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.26 -11.53 6.34 99.48 0.63 -10.90 16 13 N -0.70 -25.78 5.03 -446.09 -2.24 -28.02 16 14 C 0.50 16.73 6.43 87.65 0.56 17.29 16 15 O -0.58 -23.88 13.17 -3.02 -0.04 -23.92 16 16 C -0.09 -2.00 5.83 29.10 0.17 -1.83 16 17 C -0.05 -1.14 4.37 -19.87 -0.09 -1.23 16 18 C -0.10 -2.57 9.47 22.29 0.21 -2.36 16 19 C -0.04 -1.17 6.33 22.42 0.14 -1.03 16 20 Cl -0.05 -1.36 28.46 -2.72 -0.08 -1.44 16 21 C 0.05 1.21 6.49 22.57 0.15 1.36 16 22 C 0.05 1.37 6.49 22.55 0.15 1.52 16 23 C -0.10 -2.49 9.61 22.38 0.22 -2.27 16 24 O -0.31 -6.80 10.42 -82.64 -0.86 -7.66 16 25 C 0.01 0.16 7.26 72.14 0.52 0.69 16 26 C 0.01 0.18 7.26 72.14 0.52 0.70 16 27 O -0.31 -7.02 9.84 -82.79 -0.81 -7.84 16 28 H 0.05 2.04 5.63 -2.39 -0.01 2.03 16 29 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.03 1.44 7.89 -2.39 -0.02 1.42 16 31 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.05 2.11 5.77 -2.39 -0.01 2.09 16 33 H 0.26 15.51 8.73 -92.71 -0.81 14.70 16 34 H 0.40 12.78 8.52 -92.72 -0.79 11.99 16 35 H 0.13 2.20 8.08 -2.39 -0.02 2.18 16 36 H 0.13 2.12 8.08 -2.38 -0.02 2.10 16 37 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 38 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 39 H 0.16 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.16 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -71.66 358.84 2.32 -69.35 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.16 Total: 18.55 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 4.08 Total: -17.15 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -1.95 Total: -82.26 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -1.72 Total: -39.41 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 1.82 Total: 52.36 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -71.66 2.32 -69.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183948236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.210 kcal (2) G-P(sol) polarization free energy of solvation -71.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds