Wall clock time and date at job start Tue Mar 31 2020 22:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53011 * 109.46720 * 2 1 4 4 H 1.08994 * 109.47025 * 304.90519 * 3 2 1 5 5 C 1.50702 * 109.46586 * 184.89895 * 3 2 1 6 6 H 1.07994 * 120.00217 * 245.44920 * 5 3 2 7 7 C 1.37878 * 119.99797 * 65.45890 * 5 3 2 8 8 N 1.31515 * 120.00373 * 9.46532 * 7 5 3 9 9 Si 1.86796 * 119.99773 * 189.46386 * 7 5 3 10 10 H 1.48499 * 109.47357 * 84.99498 * 9 7 5 11 11 H 1.48499 * 109.47490 * 204.99385 * 9 7 5 12 12 H 1.48501 * 109.47138 * 324.99160 * 9 7 5 13 13 N 1.46501 * 109.46862 * 64.90247 * 3 2 1 14 14 C 1.34770 * 120.00202 * 274.99791 * 13 3 2 15 15 O 1.21280 * 119.99703 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00270 * 180.02562 * 14 13 3 17 17 C 1.50699 * 109.47397 * 179.97438 * 16 14 13 18 18 C 1.38255 * 119.94145 * 269.97712 * 17 16 14 19 19 C 1.38288 * 120.10166 * 180.09828 * 18 17 16 20 20 Cl 1.73600 * 119.97654 * 179.97438 * 19 18 17 21 21 C 1.38804 * 120.04401 * 359.95538 * 19 18 17 22 22 C 1.38923 * 119.81555 * 359.94310 * 21 19 18 23 23 C 1.38185 * 119.94350 * 89.99519 * 17 16 14 24 24 O 1.36115 * 120.78182 * 180.16567 * 22 21 19 25 25 C 1.43180 * 116.70699 * 342.69686 * 24 22 21 26 26 C 1.53469 * 108.24222 * 46.23095 * 25 24 22 27 27 O 1.36128 * 119.39336 * 179.68398 * 21 19 18 28 28 H 1.08997 * 109.46922 * 59.99591 * 1 2 3 29 29 H 1.09000 * 109.46975 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47058 * 299.99956 * 1 2 3 31 31 H 1.09002 * 109.47227 * 240.00698 * 2 1 3 32 32 H 1.08993 * 109.47173 * 119.99704 * 2 1 3 33 33 H 0.96996 * 120.00255 * 180.02562 * 8 7 5 34 34 H 0.97000 * 119.99881 * 94.99410 * 13 3 2 35 35 H 1.09000 * 109.47217 * 59.99673 * 16 14 13 36 36 H 1.09001 * 109.46774 * 299.99418 * 16 14 13 37 37 H 1.08007 * 119.94525 * 0.08082 * 18 17 16 38 38 H 1.08007 * 119.94969 * 359.95057 * 23 17 16 39 39 H 1.09003 * 109.70335 * 165.90834 * 25 24 22 40 40 H 1.08993 * 109.70989 * 286.53538 * 25 24 22 41 41 H 1.08998 * 109.70884 * 180.59439 * 26 25 24 42 42 H 1.08990 * 109.73592 * 59.99115 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6067 1.9811 -0.8427 5 6 3.5421 1.4443 -0.1213 6 1 4.1493 1.8092 0.6938 7 6 4.1412 0.9803 -1.2732 8 7 3.4097 0.7117 -2.3326 9 14 5.9919 0.7330 -1.3290 10 1 6.3291 -0.6064 -0.7836 11 1 6.4619 0.8278 -2.7344 12 1 6.6561 1.7812 -0.5133 13 7 1.6503 2.0982 1.2508 14 6 0.4329 2.6651 1.3637 15 8 -0.3403 2.6321 0.4300 16 6 0.0323 3.3400 2.6502 17 6 -1.3650 3.8883 2.5160 18 6 -1.5595 5.1754 2.0502 19 6 -2.8402 5.6825 1.9276 20 17 -3.0806 7.2994 1.3430 21 6 -3.9335 4.8995 2.2713 22 6 -3.7373 3.6056 2.7373 23 6 -2.4497 3.1038 2.8590 24 8 -4.7954 2.8194 3.0768 25 6 -6.0447 3.4827 3.2986 26 6 -6.2708 4.4775 2.1522 27 8 -5.1880 5.4143 2.1516 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5137 0.8899 33 1 3.8311 0.3849 -3.1428 34 1 2.2686 2.1243 1.9978 35 1 0.7233 4.1557 2.8631 36 1 0.0623 2.6163 3.4647 37 1 -0.7098 5.7858 1.7819 38 1 -2.2947 2.0985 3.2221 39 1 -6.8519 2.7503 3.3142 40 1 -6.0138 4.0168 4.2482 41 1 -7.2128 5.0046 2.3032 42 1 -6.2961 3.9444 1.2019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183948255.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:26 Heat of formation + Delta-G solvation = -98.817835 kcal Electronic energy + Delta-G solvation = -27081.678796 eV Core-core repulsion = 23053.067267 eV Total energy + Delta-G solvation = -4028.611530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.43653 -39.32164 -37.91997 -37.48197 -36.35003 -34.99875 -32.58513 -32.23066 -31.09496 -30.76303 -29.46892 -27.54295 -26.47216 -24.66480 -23.10850 -22.70889 -21.12515 -20.16459 -19.32224 -18.77988 -17.62371 -17.47115 -17.00405 -15.86035 -15.54113 -15.51871 -15.26012 -15.06095 -14.68444 -14.55146 -14.34795 -14.24371 -14.07618 -13.44390 -12.97209 -12.73969 -12.57735 -12.38506 -12.08225 -12.01215 -11.58730 -11.37515 -11.29097 -11.25071 -11.03212 -10.97163 -10.82518 -10.76602 -10.70361 -10.34021 -10.18659 -9.68234 -9.10012 -8.98869 -8.52016 -8.47131 -8.14324 -7.81981 -6.13939 -4.19373 1.03355 1.14045 2.05972 2.79380 2.95834 3.25197 3.32109 3.33095 3.42444 3.44085 3.97038 4.20156 4.41894 4.51258 4.52451 4.58965 4.72988 4.89046 5.13135 5.13447 5.19013 5.21442 5.24663 5.59599 5.62826 5.68825 5.80654 5.90319 6.35614 6.38143 6.40055 6.42636 6.61183 6.64310 6.99500 7.16120 7.18373 7.33726 7.43963 7.62454 7.72389 7.85753 8.08865 8.69190 8.80795 9.16589 9.46793 10.94181 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.002693 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.034562 B =10395.669336 C =11171.750971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.120 4.120 3 C 0.269 3.731 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.879 5.879 9 Si 0.897 3.103 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.709 5.709 14 C 0.501 3.499 15 O -0.539 6.539 16 C -0.105 4.105 17 C -0.035 4.035 18 C -0.091 4.091 19 C -0.027 4.027 20 Cl -0.056 7.056 21 C 0.051 3.949 22 C 0.063 3.937 23 C -0.093 4.093 24 O -0.302 6.302 25 C 0.020 3.980 26 C 0.019 3.981 27 O -0.298 6.298 28 H 0.051 0.949 29 H 0.022 0.978 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.034 0.966 33 H 0.264 0.736 34 H 0.388 0.612 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.122 0.878 40 H 0.077 0.923 41 H 0.122 0.878 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.290 7.411 13.739 22.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.167 3.833 4 H 0.074 0.926 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.724 3.276 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.357 5.357 14 C 0.285 3.715 15 O -0.417 6.417 16 C -0.145 4.145 17 C -0.036 4.036 18 C -0.110 4.110 19 C -0.055 4.055 20 Cl -0.027 7.027 21 C 0.006 3.994 22 C 0.017 3.983 23 C -0.112 4.112 24 O -0.217 6.217 25 C -0.055 4.055 26 C -0.056 4.056 27 O -0.212 6.212 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.220 0.780 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.160 0.840 38 H 0.157 0.843 39 H 0.140 0.860 40 H 0.096 0.904 41 H 0.140 0.860 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.911 7.447 12.783 22.469 hybrid contribution 1.027 -0.133 0.154 1.047 sum -15.884 7.314 12.937 21.753 Atomic orbital electron populations 1.21836 0.98009 0.98081 1.01545 1.21853 0.92959 0.99954 1.01095 1.18777 0.94249 0.88851 0.81386 0.92636 1.21180 0.90632 1.44002 1.01757 0.92102 1.24888 0.98399 0.95197 0.95013 1.69984 1.35735 1.43727 1.02142 0.86546 0.85102 0.78695 0.77256 1.20453 1.21209 1.19917 1.46470 1.14590 1.56135 1.18534 1.20150 0.82919 0.79677 0.88758 1.90713 1.51375 1.59388 1.40211 1.20744 0.93417 1.01824 0.98558 1.18966 0.94254 0.92584 0.97823 1.20718 0.94736 0.95841 0.99741 1.19974 0.92262 0.88049 1.05185 1.98357 1.97303 1.20055 1.86995 1.18385 0.85064 0.92846 1.03148 1.18571 0.88574 0.89867 1.01249 1.20328 0.88244 1.00751 1.01874 1.86357 1.16766 1.33572 1.84957 1.23641 0.85810 0.97616 0.98479 1.23658 0.90060 0.92365 0.99544 1.86370 1.11745 1.33803 1.89289 0.93021 0.95891 0.93973 0.90340 0.94754 0.92569 0.77998 0.87930 0.88080 0.84038 0.84311 0.86011 0.90438 0.85991 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.16 0.32 -2.68 16 2 C -0.12 -2.82 5.50 -26.72 -0.15 -2.96 16 3 C 0.27 6.58 2.11 -69.07 -0.15 6.44 16 4 H 0.06 1.61 7.52 -51.93 -0.39 1.22 16 5 C -0.54 -13.91 8.66 -34.44 -0.30 -14.21 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.84 5.16 -17.82 -0.09 1.75 16 8 N -0.88 -24.75 12.16 55.43 0.67 -24.08 16 9 Si 0.90 20.42 29.55 -169.99 -5.02 15.39 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.71 -13.81 5.02 -54.93 -0.28 -14.08 16 14 C 0.50 9.20 6.39 -10.99 -0.07 9.12 16 15 O -0.54 -12.10 13.17 5.56 0.07 -12.02 16 16 C -0.11 -1.35 5.83 -29.04 -0.17 -1.52 16 17 C -0.04 -0.49 4.37 -104.64 -0.46 -0.94 16 18 C -0.09 -1.27 9.47 -39.56 -0.37 -1.64 16 19 C -0.03 -0.39 6.33 -39.35 -0.25 -0.64 16 20 Cl -0.06 -0.74 28.46 -51.86 -1.48 -2.21 16 21 C 0.05 0.72 6.49 -39.12 -0.25 0.46 16 22 C 0.06 0.86 6.49 -39.15 -0.25 0.61 16 23 C -0.09 -1.28 9.61 -39.42 -0.38 -1.66 16 24 O -0.30 -3.68 10.42 -32.91 -0.34 -4.02 16 25 C 0.02 0.16 7.26 37.40 0.27 0.43 16 26 C 0.02 0.16 7.26 37.40 0.27 0.43 16 27 O -0.30 -3.67 9.84 -32.95 -0.32 -3.99 16 28 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.88 5.65 -51.93 -0.29 0.59 16 31 H 0.08 2.05 6.80 -51.93 -0.35 1.70 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.39 6.40 8.53 -40.82 -0.35 6.06 16 35 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 36 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 37 H 0.14 1.78 8.06 -52.48 -0.42 1.36 16 38 H 0.14 1.74 8.06 -52.48 -0.42 1.32 16 39 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.12 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 362.90 15.07 5.47 5.47 Total: -1.00 -32.34 362.90 -8.81 -41.15 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.55 Total: 5.43 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -2.03 Total: -7.03 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.40 Total: -38.16 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.59 Total: -20.04 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.48 Total: -2.21 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.34 -8.81 -41.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183948255.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.669 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds