Wall clock time and date at job start Tue Mar 31 2020 22:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53011 * 109.46720 * 2 1 4 4 H 1.08994 * 109.47025 * 304.90519 * 3 2 1 5 5 C 1.50702 * 109.46586 * 184.89895 * 3 2 1 6 6 H 1.07994 * 120.00217 * 245.44920 * 5 3 2 7 7 C 1.37878 * 119.99797 * 65.45890 * 5 3 2 8 8 N 1.31515 * 120.00373 * 9.46532 * 7 5 3 9 9 Si 1.86796 * 119.99773 * 189.46386 * 7 5 3 10 10 H 1.48499 * 109.47357 * 84.99498 * 9 7 5 11 11 H 1.48499 * 109.47490 * 204.99385 * 9 7 5 12 12 H 1.48501 * 109.47138 * 324.99160 * 9 7 5 13 13 N 1.46501 * 109.46862 * 64.90247 * 3 2 1 14 14 C 1.34770 * 120.00202 * 274.99791 * 13 3 2 15 15 O 1.21280 * 119.99703 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00270 * 180.02562 * 14 13 3 17 17 C 1.50699 * 109.47397 * 179.97438 * 16 14 13 18 18 C 1.38255 * 119.94145 * 269.97712 * 17 16 14 19 19 C 1.38288 * 120.10166 * 180.09828 * 18 17 16 20 20 Cl 1.73600 * 119.97654 * 179.97438 * 19 18 17 21 21 C 1.38804 * 120.04401 * 359.95538 * 19 18 17 22 22 C 1.38923 * 119.81555 * 359.94310 * 21 19 18 23 23 C 1.38185 * 119.94350 * 89.99519 * 17 16 14 24 24 O 1.36115 * 120.78182 * 180.16567 * 22 21 19 25 25 C 1.43180 * 116.70699 * 342.69686 * 24 22 21 26 26 C 1.53469 * 108.24222 * 46.23095 * 25 24 22 27 27 O 1.36128 * 119.39336 * 179.68398 * 21 19 18 28 28 H 1.08997 * 109.46922 * 59.99591 * 1 2 3 29 29 H 1.09000 * 109.46975 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47058 * 299.99956 * 1 2 3 31 31 H 1.09002 * 109.47227 * 240.00698 * 2 1 3 32 32 H 1.08993 * 109.47173 * 119.99704 * 2 1 3 33 33 H 0.96996 * 120.00255 * 180.02562 * 8 7 5 34 34 H 0.97000 * 119.99881 * 94.99410 * 13 3 2 35 35 H 1.09000 * 109.47217 * 59.99673 * 16 14 13 36 36 H 1.09001 * 109.46774 * 299.99418 * 16 14 13 37 37 H 1.08007 * 119.94525 * 0.08082 * 18 17 16 38 38 H 1.08007 * 119.94969 * 359.95057 * 23 17 16 39 39 H 1.09003 * 109.70335 * 165.90834 * 25 24 22 40 40 H 1.08993 * 109.70989 * 286.53538 * 25 24 22 41 41 H 1.08998 * 109.70884 * 180.59439 * 26 25 24 42 42 H 1.08990 * 109.73592 * 59.99115 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6067 1.9811 -0.8427 5 6 3.5421 1.4443 -0.1213 6 1 4.1493 1.8092 0.6938 7 6 4.1412 0.9803 -1.2732 8 7 3.4097 0.7117 -2.3326 9 14 5.9919 0.7330 -1.3290 10 1 6.3291 -0.6064 -0.7836 11 1 6.4619 0.8278 -2.7344 12 1 6.6561 1.7812 -0.5133 13 7 1.6503 2.0982 1.2508 14 6 0.4329 2.6651 1.3637 15 8 -0.3403 2.6321 0.4300 16 6 0.0323 3.3400 2.6502 17 6 -1.3650 3.8883 2.5160 18 6 -1.5595 5.1754 2.0502 19 6 -2.8402 5.6825 1.9276 20 17 -3.0806 7.2994 1.3430 21 6 -3.9335 4.8995 2.2713 22 6 -3.7373 3.6056 2.7373 23 6 -2.4497 3.1038 2.8590 24 8 -4.7954 2.8194 3.0768 25 6 -6.0447 3.4827 3.2986 26 6 -6.2708 4.4775 2.1522 27 8 -5.1880 5.4143 2.1516 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5137 0.8899 33 1 3.8311 0.3849 -3.1428 34 1 2.2686 2.1243 1.9978 35 1 0.7233 4.1557 2.8631 36 1 0.0623 2.6163 3.4647 37 1 -0.7098 5.7858 1.7819 38 1 -2.2947 2.0985 3.2221 39 1 -6.8519 2.7503 3.3142 40 1 -6.0138 4.0168 4.2482 41 1 -7.2128 5.0046 2.3032 42 1 -6.2961 3.9444 1.2019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183948255.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:25 Heat of formation + Delta-G solvation = -119.474669 kcal Electronic energy + Delta-G solvation = -27082.574544 eV Core-core repulsion = 23053.067267 eV Total energy + Delta-G solvation = -4029.507277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.107 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.32788 -40.73755 -39.02012 -38.37851 -37.39439 -36.75995 -34.23934 -33.59009 -32.63765 -31.78553 -30.40013 -29.09617 -27.85464 -25.58096 -24.86420 -23.82219 -22.38980 -21.50251 -20.96396 -19.71392 -18.86664 -18.51431 -18.21793 -17.36624 -17.09480 -16.61684 -16.50472 -16.14083 -15.95408 -15.68229 -15.41970 -15.32295 -15.22133 -14.71719 -14.57441 -14.11457 -13.98896 -13.47814 -13.41051 -13.24125 -13.07240 -12.98142 -12.83189 -12.61958 -12.50438 -12.17712 -12.10447 -12.01181 -11.95123 -11.77787 -11.57373 -11.55067 -11.04776 -10.57175 -10.46373 -9.55049 -9.52059 -9.14094 -8.16155 -6.28690 0.00310 0.12795 1.03264 1.46363 1.47205 1.56482 1.95954 1.99007 2.16541 2.34483 2.44938 2.92099 3.15708 3.26515 3.60619 3.68510 3.89975 4.00115 4.15633 4.20192 4.24567 4.29024 4.50137 4.51491 4.57261 4.58619 4.68186 4.72218 4.77328 4.82792 4.92082 5.10121 5.28121 5.37886 5.43432 5.46522 5.59335 5.67867 5.78290 5.80129 6.00382 6.12859 6.26272 6.81926 7.11093 7.38450 7.72453 8.92341 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.002693 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.034562 B =10395.669336 C =11171.750971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.112 4.112 3 C 0.278 3.722 4 H 0.000 1.000 5 C -0.546 4.546 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.965 3.035 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.262 1.262 13 N -0.706 5.706 14 C 0.498 3.502 15 O -0.584 6.584 16 C -0.090 4.090 17 C -0.046 4.046 18 C -0.101 4.101 19 C -0.044 4.044 20 Cl -0.055 7.055 21 C 0.045 3.955 22 C 0.055 3.945 23 C -0.103 4.103 24 O -0.317 6.317 25 C 0.015 3.985 26 C 0.011 3.989 27 O -0.312 6.312 28 H 0.021 0.979 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.263 0.737 34 H 0.406 0.594 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.156 0.844 40 H 0.088 0.912 41 H 0.159 0.841 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.397 7.321 16.175 24.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.151 4.151 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.585 4.585 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.556 5.556 9 Si 0.790 3.210 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.187 1.187 13 N -0.356 5.356 14 C 0.285 3.715 15 O -0.465 6.465 16 C -0.130 4.130 17 C -0.047 4.047 18 C -0.120 4.120 19 C -0.072 4.072 20 Cl -0.026 7.026 21 C -0.001 4.001 22 C 0.010 3.990 23 C -0.121 4.121 24 O -0.232 6.232 25 C -0.059 4.059 26 C -0.063 4.063 27 O -0.226 6.226 28 H 0.040 0.960 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.241 0.759 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.167 0.833 38 H 0.167 0.833 39 H 0.174 0.826 40 H 0.106 0.894 41 H 0.177 0.823 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.022 7.372 15.275 24.029 hybrid contribution 0.888 -0.067 -0.607 1.078 sum -16.133 7.305 14.667 22.995 Atomic orbital electron populations 1.21670 0.96732 0.99113 1.00502 1.21701 0.93988 0.99226 1.00222 1.18306 0.93474 0.88938 0.81913 0.98234 1.21582 0.91548 1.43330 1.02003 0.90768 1.25770 1.02992 0.94999 0.94695 1.70142 1.37715 1.44994 1.02782 0.85470 0.79532 0.79044 0.76973 1.19644 1.21728 1.18661 1.46218 1.15717 1.56216 1.17431 1.21073 0.81673 0.78630 0.90134 1.90704 1.52515 1.60806 1.42443 1.20719 0.93342 1.03035 0.95856 1.19091 0.94776 0.92614 0.98202 1.20904 0.95013 0.96278 0.99771 1.20169 0.92754 0.88401 1.05845 1.98347 1.97319 1.19887 1.87020 1.18523 0.85781 0.92923 1.02879 1.18700 0.89241 0.89920 1.01165 1.20563 0.88487 1.01195 1.01878 1.86328 1.17760 1.34311 1.84773 1.24014 0.84839 0.98506 0.98582 1.24024 0.90150 0.92557 0.99593 1.86347 1.11876 1.35298 1.89113 0.96024 0.93679 0.92994 0.93487 0.93106 0.92801 0.75934 0.84949 0.84594 0.83319 0.83310 0.82642 0.89401 0.82347 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.51 71.98 0.61 -4.79 16 2 C -0.11 -5.34 5.50 30.60 0.17 -5.18 16 3 C 0.28 13.81 2.11 44.25 0.09 13.90 16 4 H 0.00 -0.02 7.52 -2.39 -0.02 -0.04 16 5 C -0.55 -28.25 8.66 25.60 0.22 -28.03 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 7 C 0.02 0.84 5.16 84.65 0.44 1.28 16 8 N -0.92 -53.29 12.16 21.45 0.26 -53.03 16 9 Si 0.96 41.77 29.55 68.60 2.03 43.79 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 13 N -0.71 -26.87 5.02 -446.09 -2.24 -29.11 16 14 C 0.50 17.86 6.39 87.66 0.56 18.42 16 15 O -0.58 -26.67 13.17 -3.03 -0.04 -26.71 16 16 C -0.09 -2.09 5.83 29.10 0.17 -1.92 16 17 C -0.05 -1.21 4.37 -19.87 -0.09 -1.29 16 18 C -0.10 -2.75 9.47 22.29 0.21 -2.54 16 19 C -0.04 -1.25 6.33 22.42 0.14 -1.11 16 20 Cl -0.05 -1.43 28.46 -2.72 -0.08 -1.51 16 21 C 0.05 1.24 6.49 22.57 0.15 1.38 16 22 C 0.06 1.48 6.49 22.55 0.15 1.62 16 23 C -0.10 -2.71 9.61 22.37 0.22 -2.50 16 24 O -0.32 -7.29 10.42 -82.62 -0.86 -8.15 16 25 C 0.02 0.20 7.26 72.14 0.52 0.72 16 26 C 0.01 0.17 7.26 72.14 0.52 0.69 16 27 O -0.31 -7.41 9.84 -82.76 -0.81 -8.22 16 28 H 0.02 1.04 7.84 -2.39 -0.02 1.02 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.05 2.15 5.65 -2.39 -0.01 2.14 16 31 H 0.05 2.52 6.80 -2.39 -0.02 2.51 16 32 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 34 H 0.41 12.50 8.53 -92.71 -0.79 11.71 16 35 H 0.13 2.32 8.08 -2.39 -0.02 2.30 16 36 H 0.14 2.25 8.08 -2.39 -0.02 2.23 16 37 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 38 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 39 H 0.16 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.16 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -73.31 362.90 2.61 -70.70 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.27 Total: 21.57 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 4.08 Total: -9.34 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -1.98 Total: -82.14 kcal Atomic # 8 Polarization: -41.36 SS G_CDS: -1.71 Total: -43.08 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.51 kcal Total: -73.31 2.61 -70.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183948255.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.772 kcal (2) G-P(sol) polarization free energy of solvation -73.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds