Wall clock time and date at job start Tue Mar 31 2020 22:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50702 * 109.46867 * 2 1 4 4 N 1.29761 * 126.34077 * 90.02657 * 3 2 1 5 5 O 1.41322 * 109.74783 * 179.97438 * 4 3 2 6 6 C 1.34796 * 109.45145 * 0.02562 * 5 4 3 7 7 N 1.32503 * 133.15753 * 179.97438 * 6 5 4 8 8 C 1.31635 * 121.69662 * 179.97438 * 7 6 5 9 9 C 1.38642 * 121.51218 * 359.97309 * 8 7 6 10 10 S 1.76194 * 120.30349 * 180.02562 * 9 8 7 11 11 O 1.42106 * 106.40485 * 336.46446 * 10 9 8 12 12 O 1.42101 * 106.40709 * 203.54477 * 10 9 8 13 13 N 1.65599 * 107.21808 * 90.00389 * 10 9 8 14 14 C 1.46505 * 119.99715 * 269.99945 * 13 10 9 15 15 C 1.46500 * 120.00129 * 90.00069 * 13 10 9 16 16 H 1.09000 * 109.46609 * 0.02562 * 15 13 10 17 17 C 1.52997 * 109.47007 * 239.99904 * 15 13 10 18 18 C 1.50706 * 109.46949 * 119.99939 * 15 13 10 19 19 H 1.07999 * 120.00196 * 0.02562 * 18 15 13 20 20 C 1.37879 * 119.99394 * 180.02562 * 18 15 13 21 21 N 1.31514 * 120.00338 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 119.99426 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47361 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47264 * 120.00115 * 22 20 18 25 25 H 1.48500 * 109.46969 * 239.99720 * 22 20 18 26 26 C 1.38188 * 119.39408 * 0.30193 * 9 8 7 27 27 C 1.39810 * 118.05990 * 359.46478 * 26 9 8 28 28 H 1.09000 * 109.46929 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47181 * 300.00388 * 1 2 3 30 30 H 1.08994 * 109.46903 * 60.00219 * 1 2 3 31 31 H 1.08993 * 109.47229 * 239.99487 * 2 1 3 32 32 H 1.09006 * 109.46575 * 119.99761 * 2 1 3 33 33 H 1.07995 * 119.24801 * 180.02562 * 8 7 6 34 34 H 1.08997 * 109.47192 * 269.99485 * 14 13 10 35 35 H 1.08997 * 109.47060 * 30.00095 * 14 13 10 36 36 H 1.09005 * 109.46920 * 150.00143 * 14 13 10 37 37 H 1.09001 * 109.46832 * 179.97438 * 17 15 13 38 38 H 1.09004 * 109.47261 * 299.99917 * 17 15 13 39 39 H 1.09002 * 109.47153 * 60.00089 * 17 15 13 40 40 H 0.96996 * 119.99730 * 180.02562 * 21 20 18 41 41 H 1.08001 * 120.96756 * 179.70094 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2891 2.1457 1.0452 5 8 2.7409 3.4225 0.6417 6 6 2.7625 3.4861 -0.7046 7 7 3.0989 4.4391 -1.5616 8 6 3.0330 4.2535 -2.8632 9 6 2.6080 3.0492 -3.4029 10 16 2.5327 2.8354 -5.1501 11 8 2.4147 4.1366 -5.7090 12 8 1.5896 1.7992 -5.3874 13 7 4.0033 2.2494 -5.6361 14 6 5.0726 3.1767 -6.0144 15 6 4.2351 0.8038 -5.6878 16 1 3.3324 0.2797 -5.3738 17 6 5.3892 0.4385 -4.7522 18 6 4.5844 0.4012 -7.0975 19 1 4.6298 1.1475 -7.8768 20 6 4.8462 -0.9201 -7.3922 21 7 4.7915 -1.8289 -6.4431 22 14 5.2799 -1.4190 -9.1393 23 1 5.2750 -0.2181 -10.0128 24 1 6.6293 -2.0388 -9.1566 25 1 4.2797 -2.3970 -9.6375 26 6 2.2386 2.0201 -2.5579 27 6 2.3219 2.2388 -1.1795 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.3172 5.0575 -3.5258 34 1 5.0091 3.3887 -7.0816 35 1 4.9646 4.1044 -5.4525 36 1 6.0399 2.7267 -5.7904 37 1 5.5613 -0.6372 -4.7904 38 1 6.2917 0.9626 -5.0667 39 1 5.1365 0.7297 -3.7327 40 1 4.9760 -2.7583 -6.6504 41 1 1.8992 1.0731 -2.9509 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186148711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:33 Heat of formation + Delta-G solvation = -13.223527 kcal Electronic energy + Delta-G solvation = -27980.279710 eV Core-core repulsion = 23989.716286 eV Total energy + Delta-G solvation = -3990.563424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.40719 -40.16047 -38.40254 -37.90366 -36.93619 -36.78726 -34.50145 -33.91229 -32.42574 -31.94609 -30.89601 -27.26356 -26.99118 -25.97965 -25.31482 -25.20527 -22.55365 -21.55347 -20.54130 -19.36367 -19.11298 -18.54560 -18.26063 -18.14146 -17.74414 -16.95717 -16.77983 -16.25345 -15.57176 -15.27081 -15.14305 -14.83754 -14.78766 -14.70027 -14.62773 -14.47789 -14.03613 -13.71269 -13.37939 -13.34430 -13.16925 -13.14762 -12.96036 -12.79432 -12.76987 -12.57226 -12.53100 -12.43009 -12.19132 -12.12768 -12.01427 -11.85780 -11.13000 -11.06754 -11.02531 -10.71159 -10.46230 -9.66961 -8.08353 -6.20020 -0.96816 -0.84312 -0.58702 0.61248 0.67212 1.45610 1.50117 1.58931 1.82504 2.17413 2.32289 2.47981 2.57759 2.73154 3.04489 3.18086 3.21587 3.43777 3.46213 3.73749 3.99543 4.10950 4.13617 4.18178 4.30736 4.36940 4.68769 4.73618 4.79056 4.89452 4.93835 4.97062 4.99140 5.06065 5.14255 5.24904 5.26383 5.64963 5.65485 5.73582 5.89696 6.10781 6.13516 6.33139 6.87306 7.48904 8.96037 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013823 B = 0.004020 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.161230 B = 6964.029935 C = 7968.812234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.064 4.064 3 C 0.174 3.826 4 N -0.290 5.290 5 O -0.104 6.104 6 C 0.314 3.686 7 N -0.502 5.502 8 C 0.271 3.729 9 C -0.763 4.763 10 S 2.708 3.292 11 O -0.970 6.970 12 O -0.977 6.977 13 N -0.984 5.984 14 C 0.094 3.906 15 C 0.269 3.731 16 H 0.040 0.960 17 C -0.140 4.140 18 C -0.533 4.533 19 H 0.060 0.940 20 C 0.022 3.978 21 N -0.912 5.912 22 Si 0.949 3.051 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.285 1.285 26 C 0.122 3.878 27 C -0.271 4.271 28 H 0.098 0.902 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.220 0.780 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.042 0.958 39 H 0.029 0.971 40 H 0.264 0.736 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.102 4.994 10.229 12.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.102 4.102 3 C -0.007 4.007 4 N -0.039 5.039 5 O -0.103 6.103 6 C 0.132 3.868 7 N -0.222 5.222 8 C 0.107 3.893 9 C -0.850 4.850 10 S 2.797 3.203 11 O -0.960 6.960 12 O -0.967 6.967 13 N -0.824 5.824 14 C -0.051 4.051 15 C 0.166 3.834 16 H 0.058 0.942 17 C -0.199 4.199 18 C -0.573 4.573 19 H 0.078 0.922 20 C -0.178 4.178 21 N -0.551 5.551 22 Si 0.776 3.224 23 H -0.194 1.194 24 H -0.205 1.205 25 H -0.211 1.211 26 C 0.094 3.906 27 C -0.278 4.278 28 H 0.117 0.883 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.236 0.764 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.073 0.927 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -4.433 5.977 11.570 13.756 hybrid contribution 0.393 -1.111 -1.181 1.668 sum -4.040 4.867 10.389 12.163 Atomic orbital electron populations 1.21788 0.91540 1.04793 1.02530 1.20698 0.98129 0.83999 1.07397 1.25198 0.89309 0.98499 0.87717 1.80092 1.18506 0.87649 1.17692 1.89227 1.74436 1.31242 1.15374 1.20973 0.88752 0.90534 0.86550 1.66924 1.21297 1.31096 1.02926 1.23195 0.82978 0.94288 0.88881 1.32202 1.20472 1.03411 1.28909 1.01484 0.73045 0.72585 0.73197 1.93525 1.86147 1.40120 1.76187 1.93547 1.60584 1.58204 1.84409 1.57336 1.30660 1.15265 1.79144 1.21513 0.91269 0.91601 1.00736 1.18535 0.95526 0.73920 0.95463 0.94238 1.21969 0.98845 1.03132 0.95976 1.21654 1.47290 0.93382 0.94969 0.92212 1.25530 0.95291 0.96560 1.00412 1.69945 1.49917 1.01946 1.33315 0.85636 0.77671 0.78196 0.80901 1.19400 1.20523 1.21093 1.21176 0.81752 0.97954 0.89678 1.21546 1.14163 0.95876 0.96217 0.88296 0.92240 0.92429 0.86516 0.86540 0.76415 0.92987 0.89387 0.90389 0.91136 0.93860 0.95166 0.92672 0.80399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.90 71.98 0.71 -1.18 16 2 C -0.06 -0.94 6.54 29.85 0.20 -0.74 16 3 C 0.17 3.98 6.72 45.00 0.30 4.28 16 4 N -0.29 -7.76 12.81 -43.56 -0.56 -8.32 16 5 O -0.10 -3.19 12.05 30.20 0.36 -2.83 16 6 C 0.31 9.36 8.64 85.16 0.74 10.10 16 7 N -0.50 -14.43 10.38 -308.21 -3.20 -17.63 16 8 C 0.27 6.87 10.66 84.82 0.90 7.78 16 9 C -0.76 -21.12 5.99 22.35 0.13 -20.99 16 10 S 2.71 90.14 5.65 -56.49 -0.32 89.83 16 11 O -0.97 -32.77 16.36 -128.00 -2.09 -34.87 16 12 O -0.98 -38.96 15.91 -128.00 -2.04 -41.00 16 13 N -0.98 -35.21 3.06 -520.43 -1.59 -36.80 16 14 C 0.09 2.77 9.53 127.77 1.22 3.98 16 15 C 0.27 11.80 2.62 44.25 0.12 11.91 16 16 H 0.04 1.90 6.91 -2.39 -0.02 1.89 16 17 C -0.14 -5.69 8.95 71.98 0.64 -5.05 16 18 C -0.53 -26.49 8.37 25.60 0.21 -26.27 16 19 H 0.06 2.96 7.65 -2.91 -0.02 2.94 16 20 C 0.02 1.12 5.30 84.66 0.45 1.57 16 21 N -0.91 -47.55 11.32 21.45 0.24 -47.31 16 22 Si 0.95 40.79 29.54 68.60 2.03 42.82 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 24 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 26 C 0.12 3.25 9.69 22.64 0.22 3.46 16 27 C -0.27 -7.20 6.34 -20.20 -0.13 -7.33 16 28 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.22 4.11 7.60 -2.91 -0.02 4.09 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.09 1.93 7.79 -2.39 -0.02 1.91 16 36 H 0.08 2.25 6.43 -2.38 -0.02 2.24 16 37 H 0.07 3.26 6.07 -2.39 -0.01 3.25 16 38 H 0.04 1.66 6.66 -2.38 -0.02 1.65 16 39 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.26 13.15 8.31 -92.71 -0.77 12.37 16 41 H 0.18 4.23 7.70 -2.91 -0.02 4.20 16 Total: -1.00 -65.12 359.76 -0.39 -65.50 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 1.07 Total: 9.08 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: 5.72 Total: -18.48 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -5.11 Total: -110.06 kcal Atomic # 8 Polarization: -74.92 SS G_CDS: -3.77 Total: -78.69 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Atomic # 16 Polarization: 90.14 SS G_CDS: -0.32 Total: 89.83 kcal Total: -65.12 -0.39 -65.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186148711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.278 kcal (2) G-P(sol) polarization free energy of solvation -65.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds