Wall clock time and date at job start Tue Mar 31 2020 22:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50702 * 109.46991 * 2 1 4 4 N 1.29771 * 126.33937 * 269.97424 * 3 2 1 5 5 O 1.41315 * 109.74776 * 180.02562 * 4 3 2 6 6 C 1.34796 * 109.45387 * 359.97438 * 5 4 3 7 7 N 1.32498 * 133.15510 * 179.97438 * 6 5 4 8 8 C 1.31641 * 121.69517 * 179.70855 * 7 6 5 9 9 C 1.38640 * 121.50829 * 0.60614 * 8 7 6 10 10 S 1.76200 * 120.29921 * 179.71122 * 9 8 7 11 11 O 1.42113 * 106.39836 * 156.18696 * 10 9 8 12 12 O 1.42097 * 106.40257 * 23.27220 * 10 9 8 13 13 N 1.65598 * 107.22225 * 269.72320 * 10 9 8 14 14 C 1.46504 * 119.99398 * 65.00007 * 13 10 9 15 15 C 1.53006 * 109.46883 * 164.99895 * 14 13 10 16 16 C 1.52997 * 109.47127 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47055 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00290 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00258 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99506 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00308 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.46854 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47025 * 119.99441 * 21 19 17 24 24 H 1.48498 * 109.46692 * 239.99413 * 21 19 17 25 25 C 1.38186 * 119.39769 * 359.44532 * 9 8 7 26 26 C 1.39809 * 118.05968 * 0.24465 * 25 9 8 27 27 H 1.09003 * 109.47224 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47155 * 300.00007 * 1 2 3 29 29 H 1.08997 * 109.47531 * 60.00341 * 1 2 3 30 30 H 1.09005 * 109.47155 * 239.99993 * 2 1 3 31 31 H 1.08997 * 109.47531 * 119.99659 * 2 1 3 32 32 H 1.07998 * 119.24834 * 180.32340 * 8 7 6 33 33 H 0.96998 * 120.00439 * 245.00244 * 13 10 9 34 34 H 1.09001 * 109.46891 * 45.00329 * 14 13 10 35 35 H 1.08993 * 109.47378 * 284.99701 * 14 13 10 36 36 H 1.09001 * 109.46801 * 300.00349 * 15 14 13 37 37 H 1.09001 * 109.46998 * 59.99945 * 15 14 13 38 38 H 1.08996 * 109.46952 * 300.00302 * 16 15 14 39 39 H 1.09001 * 109.46832 * 60.00321 * 16 15 14 40 40 H 0.96999 * 119.99910 * 180.02562 * 20 19 17 41 41 H 1.07995 * 120.97153 * 180.22854 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2890 2.1457 -1.0453 5 8 2.7408 3.4224 -0.6418 6 6 2.7625 3.4862 0.7045 7 7 3.0997 4.4389 1.5613 8 6 3.0278 4.2556 2.8629 9 6 2.6066 3.0500 3.4027 10 16 2.5296 2.8370 5.1501 11 8 1.5852 1.8017 5.3868 12 8 2.4122 4.1385 5.7082 13 7 3.9992 2.2497 5.6376 14 6 5.2017 3.0740 5.4933 15 6 6.3316 2.4797 6.3367 16 6 7.5872 3.3408 6.1865 17 6 8.7002 2.7551 7.0168 18 1 8.5290 1.8586 7.5941 19 6 9.9369 3.3643 7.0401 20 7 10.1453 4.4563 6.3374 21 14 11.3163 2.6388 8.0698 22 1 10.8285 1.4186 8.7613 23 1 12.4585 2.2858 7.1889 24 1 11.7582 3.6355 9.0780 25 6 2.2424 2.0189 2.5579 26 6 2.3211 2.2392 1.1795 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 3.3076 5.0612 3.5255 33 1 4.0638 1.3601 6.0187 34 1 4.9899 4.0880 5.8324 35 1 5.5033 3.0965 4.4462 36 1 6.0299 2.4572 7.3839 37 1 6.5432 1.4656 5.9977 38 1 7.8889 3.3637 5.1394 39 1 7.3752 4.3547 6.5259 40 1 11.0154 4.8847 6.3535 41 1 1.9070 1.0706 2.9508 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186149664.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:23 Heat of formation + Delta-G solvation = -11.542097 kcal Electronic energy + Delta-G solvation = -26434.838953 eV Core-core repulsion = 22444.348441 eV Total energy + Delta-G solvation = -3990.490512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.58509 -39.33061 -37.48084 -36.16107 -36.11119 -36.05355 -33.32376 -33.17706 -31.80629 -31.12379 -30.95688 -26.49237 -25.32484 -24.64465 -24.45354 -23.09988 -20.87910 -20.73630 -19.94514 -18.74073 -18.33857 -17.48251 -17.42865 -16.88177 -16.57545 -16.04955 -15.80373 -15.01601 -14.78558 -14.68566 -14.56152 -14.43114 -14.06006 -13.88015 -13.81955 -13.45790 -12.74664 -12.55031 -12.42627 -12.36150 -12.32006 -12.24802 -12.13063 -11.93054 -11.76324 -11.64298 -11.51499 -10.98993 -10.84335 -10.57553 -10.27284 -10.18216 -10.00608 -9.87207 -9.54749 -9.40392 -9.15525 -8.41902 -6.06606 -4.09530 -0.13505 -0.04238 0.24133 1.37501 1.52008 2.66461 2.94786 3.07154 3.27319 3.30205 3.35318 3.38528 3.50564 3.82876 3.98180 4.15577 4.24831 4.40142 4.42042 4.51114 4.52542 4.75359 4.94503 5.08613 5.17244 5.21185 5.21202 5.29284 5.29731 5.52340 5.55850 5.61017 5.76964 5.95992 6.46635 6.46749 6.65034 6.84160 6.99768 6.99897 7.57290 7.68877 7.91760 8.32992 8.97271 9.55214 11.04670 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013419 B = 0.002617 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.022733 B =10697.510139 C =11445.048759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.060 4.060 3 C 0.157 3.843 4 N -0.271 5.271 5 O -0.078 6.078 6 C 0.335 3.665 7 N -0.484 5.484 8 C 0.272 3.728 9 C -0.768 4.768 10 S 2.706 3.294 11 O -0.960 6.960 12 O -0.945 6.945 13 N -1.109 6.109 14 C 0.108 3.892 15 C -0.115 4.115 16 C 0.021 3.979 17 C -0.522 4.522 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.119 3.881 26 C -0.270 4.270 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.197 0.803 33 H 0.420 0.580 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.018 0.982 39 H 0.021 0.979 40 H 0.261 0.739 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.514 -8.757 -10.466 24.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.098 4.098 3 C -0.025 4.025 4 N -0.017 5.017 5 O -0.079 6.079 6 C 0.152 3.848 7 N -0.203 5.203 8 C 0.107 3.893 9 C -0.854 4.854 10 S 2.791 3.209 11 O -0.950 6.950 12 O -0.935 6.935 13 N -0.872 5.872 14 C -0.016 4.016 15 C -0.154 4.154 16 C -0.017 4.017 17 C -0.561 4.561 18 H 0.075 0.925 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C 0.091 3.909 26 C -0.277 4.277 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.213 0.787 33 H 0.255 0.745 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.037 0.963 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -20.764 -7.292 -11.937 25.036 hybrid contribution 1.088 -1.390 0.882 1.974 sum -19.675 -8.682 -11.055 24.181 Atomic orbital electron populations 1.21774 0.92432 1.03542 1.03145 1.20386 0.97492 0.86221 1.05719 1.24622 0.91389 0.97540 0.88948 1.80121 1.16451 0.87998 1.17156 1.89302 1.73674 1.29834 1.15131 1.20784 0.87797 0.89668 0.86521 1.66920 1.20053 1.30819 1.02531 1.22887 0.83134 0.94079 0.89179 1.32201 1.20736 1.02976 1.29462 1.01766 0.72591 0.73962 0.72622 1.93588 1.59350 1.57763 1.84257 1.93623 1.85423 1.39838 1.74627 1.55499 1.24712 1.29337 1.77610 1.21694 0.84424 0.94587 1.00943 1.21851 0.94928 1.00235 0.98420 1.19088 0.90186 0.94963 0.97503 1.21229 0.95867 1.10972 1.27999 0.92550 1.25028 0.98788 0.94957 0.95689 1.69964 1.23317 1.19038 1.40942 0.86530 0.82108 0.79154 0.80162 1.19753 1.21038 1.20964 1.20878 0.82802 0.97422 0.89769 1.21424 1.14337 0.96022 0.95890 0.90395 0.91745 0.91837 0.88274 0.88028 0.78655 0.74476 0.90051 0.92150 0.92166 0.92551 0.96342 0.96051 0.92945 0.81730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.89 37.15 0.37 -0.27 16 2 C -0.06 -0.30 6.54 -27.88 -0.18 -0.48 16 3 C 0.16 1.43 6.72 -80.16 -0.54 0.89 16 4 N -0.27 -3.16 12.81 34.88 0.45 -2.71 16 5 O -0.08 -1.07 12.05 7.77 0.09 -0.98 16 6 C 0.34 4.39 8.64 -16.39 -0.14 4.25 16 7 N -0.48 -6.42 10.38 -12.98 -0.13 -6.55 16 8 C 0.27 3.06 10.66 -17.49 -0.19 2.87 16 9 C -0.77 -7.86 5.96 -39.45 -0.24 -8.09 16 10 S 2.71 29.50 5.75 -107.50 -0.62 28.88 16 11 O -0.96 -11.63 17.35 -57.17 -0.99 -12.62 16 12 O -0.95 -12.92 16.75 -57.17 -0.96 -13.88 16 13 N -1.11 -12.08 6.00 -10.61 -0.06 -12.15 16 14 C 0.11 1.50 6.22 -4.04 -0.03 1.48 16 15 C -0.12 -2.03 5.29 -26.73 -0.14 -2.17 16 16 C 0.02 0.49 4.97 -27.89 -0.14 0.35 16 17 C -0.52 -14.04 9.11 -34.44 -0.31 -14.35 16 18 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 21 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C 0.12 1.09 9.69 -39.01 -0.38 0.71 16 26 C -0.27 -2.84 6.34 -105.14 -0.67 -3.51 16 27 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.20 1.79 7.60 -52.49 -0.40 1.39 16 33 H 0.42 3.83 8.65 -34.47 -0.30 3.53 16 34 H 0.08 1.13 7.75 -51.93 -0.40 0.73 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.17 0.98 7.70 -52.49 -0.40 0.57 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -34.88 369.91 -8.89 -43.77 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -5.27 Total: -3.17 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -2.68 Total: -16.84 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: 0.98 Total: -46.74 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -1.86 Total: -27.47 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 29.50 SS G_CDS: -0.62 Total: 28.88 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.88 -8.89 -43.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186149664.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.228 kcal (2) G-P(sol) polarization free energy of solvation -34.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds