Wall clock time and date at job start Tue Mar 31 2020 22:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50702 * 109.46991 * 2 1 4 4 N 1.29771 * 126.33937 * 269.97424 * 3 2 1 5 5 O 1.41315 * 109.74776 * 180.02562 * 4 3 2 6 6 C 1.34796 * 109.45387 * 359.97438 * 5 4 3 7 7 N 1.32498 * 133.15510 * 179.97438 * 6 5 4 8 8 C 1.31641 * 121.69517 * 179.70855 * 7 6 5 9 9 C 1.38640 * 121.50829 * 0.60614 * 8 7 6 10 10 S 1.76200 * 120.29921 * 179.71122 * 9 8 7 11 11 O 1.42113 * 106.39836 * 156.18696 * 10 9 8 12 12 O 1.42097 * 106.40257 * 23.27220 * 10 9 8 13 13 N 1.65598 * 107.22225 * 269.72320 * 10 9 8 14 14 C 1.46504 * 119.99398 * 65.00007 * 13 10 9 15 15 C 1.53006 * 109.46883 * 164.99895 * 14 13 10 16 16 C 1.52997 * 109.47127 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47055 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00290 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00258 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99506 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00308 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.46854 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47025 * 119.99441 * 21 19 17 24 24 H 1.48498 * 109.46692 * 239.99413 * 21 19 17 25 25 C 1.38186 * 119.39769 * 359.44532 * 9 8 7 26 26 C 1.39809 * 118.05968 * 0.24465 * 25 9 8 27 27 H 1.09003 * 109.47224 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47155 * 300.00007 * 1 2 3 29 29 H 1.08997 * 109.47531 * 60.00341 * 1 2 3 30 30 H 1.09005 * 109.47155 * 239.99993 * 2 1 3 31 31 H 1.08997 * 109.47531 * 119.99659 * 2 1 3 32 32 H 1.07998 * 119.24834 * 180.32340 * 8 7 6 33 33 H 0.96998 * 120.00439 * 245.00244 * 13 10 9 34 34 H 1.09001 * 109.46891 * 45.00329 * 14 13 10 35 35 H 1.08993 * 109.47378 * 284.99701 * 14 13 10 36 36 H 1.09001 * 109.46801 * 300.00349 * 15 14 13 37 37 H 1.09001 * 109.46998 * 59.99945 * 15 14 13 38 38 H 1.08996 * 109.46952 * 300.00302 * 16 15 14 39 39 H 1.09001 * 109.46832 * 60.00321 * 16 15 14 40 40 H 0.96999 * 119.99910 * 180.02562 * 20 19 17 41 41 H 1.07995 * 120.97153 * 180.22854 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2890 2.1457 -1.0453 5 8 2.7408 3.4224 -0.6418 6 6 2.7625 3.4862 0.7045 7 7 3.0997 4.4389 1.5613 8 6 3.0278 4.2556 2.8629 9 6 2.6066 3.0500 3.4027 10 16 2.5296 2.8370 5.1501 11 8 1.5852 1.8017 5.3868 12 8 2.4122 4.1385 5.7082 13 7 3.9992 2.2497 5.6376 14 6 5.2017 3.0740 5.4933 15 6 6.3316 2.4797 6.3367 16 6 7.5872 3.3408 6.1865 17 6 8.7002 2.7551 7.0168 18 1 8.5290 1.8586 7.5941 19 6 9.9369 3.3643 7.0401 20 7 10.1453 4.4563 6.3374 21 14 11.3163 2.6388 8.0698 22 1 10.8285 1.4186 8.7613 23 1 12.4585 2.2858 7.1889 24 1 11.7582 3.6355 9.0780 25 6 2.2424 2.0189 2.5579 26 6 2.3211 2.2392 1.1795 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 3.3076 5.0612 3.5255 33 1 4.0638 1.3601 6.0187 34 1 4.9899 4.0880 5.8324 35 1 5.5033 3.0965 4.4462 36 1 6.0299 2.4572 7.3839 37 1 6.5432 1.4656 5.9977 38 1 7.8889 3.3637 5.1394 39 1 7.3752 4.3547 6.5259 40 1 11.0154 4.8847 6.3535 41 1 1.9070 1.0706 2.9508 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186149664.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:22 Heat of formation + Delta-G solvation = -38.830623 kcal Electronic energy + Delta-G solvation = -26436.022273 eV Core-core repulsion = 22444.348441 eV Total energy + Delta-G solvation = -3991.673831 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.41702 -40.18785 -38.45716 -37.37175 -37.04555 -36.79216 -35.15275 -33.93715 -32.62171 -32.42542 -31.96310 -28.19106 -26.00322 -25.34615 -25.22141 -24.75116 -22.22379 -21.55104 -20.90035 -19.64148 -19.16925 -18.56453 -18.39687 -18.21372 -17.75921 -16.97457 -16.83801 -16.45289 -16.02607 -15.60239 -15.55704 -15.11726 -14.82322 -14.67332 -14.65499 -14.30112 -14.04951 -14.03391 -13.73182 -13.36362 -13.28381 -13.20821 -13.18408 -12.82925 -12.78209 -12.54586 -12.50262 -12.43010 -12.25823 -12.00191 -11.66933 -11.36735 -11.13520 -11.08869 -11.03767 -10.73372 -10.52195 -10.44560 -8.16895 -6.26594 -0.99336 -0.85752 -0.64674 0.62542 0.65667 1.42352 1.43706 1.55625 1.76687 2.06084 2.32948 2.43937 2.54706 2.63267 3.03544 3.16813 3.17650 3.43453 3.44521 3.72554 3.96356 4.05823 4.15561 4.20234 4.29372 4.31450 4.36317 4.52116 4.70612 4.72806 4.81911 4.96193 4.97822 5.03052 5.23946 5.27515 5.29502 5.58759 5.65292 5.80692 5.91227 6.09894 6.13242 6.28843 6.91935 7.42740 8.94904 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013419 B = 0.002617 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.022733 B =10697.510139 C =11445.048759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.061 4.061 3 C 0.175 3.825 4 N -0.295 5.295 5 O -0.113 6.113 6 C 0.311 3.689 7 N -0.513 5.513 8 C 0.264 3.736 9 C -0.766 4.766 10 S 2.734 3.266 11 O -0.963 6.963 12 O -0.972 6.972 13 N -1.101 6.101 14 C 0.116 3.884 15 C -0.104 4.104 16 C 0.019 3.981 17 C -0.538 4.538 18 H 0.063 0.937 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.960 3.040 22 H -0.260 1.260 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.131 3.869 26 C -0.272 4.272 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.111 0.889 31 H 0.130 0.870 32 H 0.209 0.791 33 H 0.431 0.569 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.068 0.932 38 H -0.003 1.003 39 H -0.003 1.003 40 H 0.262 0.738 41 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.489 -11.643 -9.472 26.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.099 4.099 3 C -0.007 4.007 4 N -0.045 5.045 5 O -0.111 6.111 6 C 0.128 3.872 7 N -0.234 5.234 8 C 0.100 3.900 9 C -0.853 4.853 10 S 2.820 3.180 11 O -0.953 6.953 12 O -0.962 6.962 13 N -0.864 5.864 14 C -0.010 4.010 15 C -0.143 4.143 16 C -0.019 4.019 17 C -0.576 4.576 18 H 0.081 0.919 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.786 3.214 22 H -0.184 1.184 23 H -0.207 1.207 24 H -0.208 1.208 25 C 0.104 3.896 26 C -0.279 4.279 27 H 0.119 0.881 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.129 0.871 31 H 0.148 0.852 32 H 0.225 0.775 33 H 0.268 0.732 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.071 0.929 41 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -21.746 -10.182 -10.912 26.375 hybrid contribution 1.331 -0.525 0.556 1.536 sum -20.415 -10.707 -10.356 25.272 Atomic orbital electron populations 1.21800 0.91664 1.04823 1.02503 1.20734 0.97915 0.83488 1.07753 1.25334 0.89152 0.98670 0.87559 1.80127 1.18578 0.87569 1.18265 1.89250 1.74470 1.31540 1.15805 1.21056 0.88644 0.90940 0.86544 1.66867 1.21291 1.31886 1.03352 1.23185 0.82983 0.95076 0.88780 1.32093 1.21160 1.03088 1.28962 1.00831 0.71967 0.72966 0.72256 1.93580 1.59366 1.57865 1.84525 1.93593 1.85755 1.41334 1.75545 1.55242 1.23615 1.29592 1.77944 1.21414 0.84255 0.94577 1.00737 1.21608 0.93463 0.99721 0.99556 1.19015 0.92536 0.94829 0.95534 1.21749 0.96849 1.11068 1.27962 0.91853 1.25945 1.01659 0.95376 0.96992 1.70095 1.24005 1.20591 1.42723 0.85462 0.78806 0.78699 0.78460 1.18372 1.20747 1.20766 1.21335 0.81015 0.98429 0.88850 1.21604 1.14142 0.95239 0.96874 0.88114 0.91904 0.93054 0.87062 0.85181 0.77474 0.73162 0.90269 0.91194 0.91798 0.91331 0.98439 0.98432 0.92931 0.77860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.89 71.98 0.71 -0.13 16 2 C -0.06 -0.41 6.54 29.85 0.20 -0.22 16 3 C 0.17 2.93 6.72 45.00 0.30 3.23 16 4 N -0.30 -6.92 12.81 -43.55 -0.56 -7.48 16 5 O -0.11 -3.25 12.05 30.20 0.36 -2.88 16 6 C 0.31 8.31 8.64 85.16 0.74 9.05 16 7 N -0.51 -14.00 10.38 -308.21 -3.20 -17.20 16 8 C 0.26 5.86 10.66 84.82 0.90 6.76 16 9 C -0.77 -14.32 5.96 22.35 0.13 -14.19 16 10 S 2.73 53.42 5.75 -56.49 -0.32 53.09 16 11 O -0.96 -20.24 17.35 -128.00 -2.22 -22.46 16 12 O -0.97 -25.24 16.75 -128.00 -2.14 -27.38 16 13 N -1.10 -21.23 6.00 -187.48 -1.12 -22.35 16 14 C 0.12 3.05 6.22 86.38 0.54 3.59 16 15 C -0.10 -3.55 5.29 30.60 0.16 -3.39 16 16 C 0.02 0.91 4.97 29.85 0.15 1.05 16 17 C -0.54 -28.86 9.11 25.60 0.23 -28.63 16 18 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 19 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 20 N -0.93 -55.39 13.29 21.45 0.28 -55.11 16 21 Si 0.96 42.94 29.54 68.60 2.03 44.96 16 22 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 C 0.13 2.04 9.69 22.64 0.22 2.26 16 26 C -0.27 -5.37 6.34 -20.20 -0.13 -5.50 16 27 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 29 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.21 3.81 7.60 -2.91 -0.02 3.79 16 33 H 0.43 6.47 8.65 -96.75 -0.84 5.64 16 34 H 0.08 2.14 7.75 -2.39 -0.02 2.12 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 39 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 40 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 41 H 0.20 1.46 7.70 -2.91 -0.02 1.44 16 Total: -1.00 -76.85 369.91 -2.05 -78.89 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 0.23 Total: 3.68 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 4.62 Total: -25.77 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -4.60 Total: -102.14 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -4.00 Total: -52.72 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 53.42 SS G_CDS: -0.32 Total: 53.09 kcal Total: -76.85 -2.05 -78.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186149664.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.064 kcal (2) G-P(sol) polarization free energy of solvation -76.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds