Wall clock time and date at job start Tue Mar 31 2020 22:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.46648 * 2 1 4 4 N 1.29766 * 126.34383 * 90.02778 * 3 2 1 5 5 O 1.41326 * 109.74939 * 180.02562 * 4 3 2 6 6 C 1.34795 * 109.45150 * 359.97438 * 5 4 3 7 7 N 1.32501 * 133.15002 * 180.02562 * 6 5 4 8 8 C 1.31637 * 121.68763 * 180.02562 * 7 6 5 9 9 C 1.38637 * 121.51563 * 359.97236 * 8 7 6 10 10 S 1.76205 * 120.30097 * 180.02562 * 9 8 7 11 11 O 1.42093 * 106.40371 * 336.45803 * 10 9 8 12 12 O 1.42102 * 106.39824 * 203.54003 * 10 9 8 13 13 N 1.65592 * 107.21926 * 90.00002 * 10 9 8 14 14 C 1.46504 * 120.00395 * 65.21339 * 13 10 9 15 15 H 1.09006 * 109.46758 * 336.26999 * 14 13 10 16 16 C 1.50699 * 109.47443 * 216.26501 * 14 13 10 17 17 H 1.07998 * 119.99652 * 0.02562 * 16 14 13 18 18 C 1.37879 * 119.99790 * 179.97438 * 16 14 13 19 19 N 1.31508 * 120.00323 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99731 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47282 * 89.99816 * 20 18 16 22 22 H 1.48499 * 109.47282 * 210.00115 * 20 18 16 23 23 H 1.48507 * 109.47210 * 329.99940 * 20 18 16 24 24 C 1.53002 * 109.47272 * 96.26374 * 14 13 10 25 25 C 1.52997 * 109.46868 * 58.48022 * 24 14 13 26 26 C 1.38178 * 119.39518 * 0.29780 * 9 8 7 27 27 C 1.39814 * 118.05930 * 359.47223 * 26 9 8 28 28 H 1.09006 * 109.46869 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47603 * 299.99400 * 1 2 3 30 30 H 1.08995 * 109.47540 * 60.00138 * 1 2 3 31 31 H 1.08992 * 109.47407 * 240.00432 * 2 1 3 32 32 H 1.08999 * 109.47114 * 119.99607 * 2 1 3 33 33 H 1.08002 * 119.24506 * 179.97438 * 8 7 6 34 34 H 0.97004 * 120.00147 * 245.21436 * 13 10 9 35 35 H 0.96995 * 120.00373 * 180.02562 * 19 18 16 36 36 H 1.09003 * 109.46949 * 298.48681 * 24 14 13 37 37 H 1.08993 * 109.47458 * 178.48740 * 24 14 13 38 38 H 1.09000 * 109.47091 * 55.72893 * 25 24 14 39 39 H 1.08999 * 109.47421 * 295.71987 * 25 24 14 40 40 H 1.09004 * 109.47256 * 175.72115 * 25 24 14 41 41 H 1.08004 * 120.97092 * 179.70287 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2889 2.1458 1.0452 5 8 2.7395 3.4230 0.6416 6 6 2.7615 3.4865 -0.7047 7 7 3.0980 4.4395 -1.5615 8 6 3.0315 4.2541 -2.8631 9 6 2.6058 3.0501 -3.4028 10 16 2.5297 2.8366 -5.1502 11 8 2.4119 4.1379 -5.7087 12 8 1.5861 1.8008 -5.3871 13 7 3.9998 2.2502 -5.6369 14 6 4.4401 0.9228 -5.2002 15 1 3.9255 0.6548 -4.2774 16 6 5.9276 0.9410 -4.9591 17 1 6.4888 1.8504 -5.1150 18 6 6.5717 -0.2032 -4.5384 19 7 5.8882 -1.3104 -4.3480 20 14 8.4154 -0.1804 -4.2388 21 1 8.6828 0.1913 -2.8262 22 1 8.9778 -1.5276 -4.5111 23 1 9.0513 0.8130 -5.1410 24 6 4.1117 -0.1057 -6.2844 25 6 4.8033 0.2913 -7.5901 26 6 2.2364 2.0210 -2.5579 27 6 2.3202 2.2395 -1.1795 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.3150 5.0584 -3.5258 34 1 4.5696 2.7855 -6.2111 35 1 6.3413 -2.1152 -4.0517 36 1 3.0333 -0.1381 -6.4398 37 1 4.4634 -1.0886 -5.9712 38 1 5.8741 0.3978 -7.4163 39 1 4.3965 1.2389 -7.9433 40 1 4.6322 -0.4800 -8.3411 41 1 1.8964 1.0742 -2.9509 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186424121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:37 Heat of formation + Delta-G solvation = -6.720821 kcal Electronic energy + Delta-G solvation = -28060.334171 eV Core-core repulsion = 24070.052725 eV Total energy + Delta-G solvation = -3990.281446 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.19654 -38.92682 -37.00162 -36.12477 -35.75462 -35.53521 -32.76819 -32.34694 -31.43735 -30.72706 -30.42088 -26.50981 -24.94641 -24.25726 -24.04894 -23.66210 -20.49924 -20.21337 -19.50985 -18.26173 -17.69855 -17.45421 -17.03014 -16.56276 -16.28528 -15.57919 -15.28389 -14.74560 -14.62292 -14.30941 -13.82351 -13.63674 -13.49551 -13.42805 -13.26071 -13.08531 -12.89456 -12.33938 -12.20095 -11.97899 -11.87149 -11.75962 -11.69399 -11.52167 -11.37000 -11.14714 -11.10198 -10.98377 -10.70464 -10.52271 -10.13344 -9.84079 -9.82772 -9.76403 -9.46435 -9.27899 -8.72523 -8.39976 -6.26145 -4.33633 0.25536 0.45054 0.80669 1.75560 1.88908 3.13880 3.16245 3.24479 3.26440 3.42727 3.54668 3.72753 4.05616 4.24212 4.25315 4.42638 4.59927 4.64943 4.83978 4.87719 4.91624 5.06160 5.20905 5.37246 5.53825 5.56666 5.58265 5.67923 5.89307 6.00035 6.09116 6.30833 6.43769 6.52005 6.83343 6.91617 7.15265 7.30376 7.35000 7.39760 7.55597 7.64442 7.90786 8.13060 8.68622 9.32813 10.78841 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009615 B = 0.005023 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.447942 B = 5572.651132 C = 6632.543908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.062 4.062 3 C 0.163 3.837 4 N -0.279 5.279 5 O -0.083 6.083 6 C 0.329 3.671 7 N -0.491 5.491 8 C 0.270 3.730 9 C -0.758 4.758 10 S 2.699 3.301 11 O -0.973 6.973 12 O -0.955 6.955 13 N -1.094 6.094 14 C 0.279 3.721 15 H 0.037 0.963 16 C -0.523 4.523 17 H 0.065 0.935 18 C 0.068 3.932 19 N -0.885 5.885 20 Si 0.895 3.105 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.272 1.272 24 C -0.136 4.136 25 C -0.131 4.131 26 C 0.126 3.874 27 C -0.266 4.266 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.192 0.808 34 H 0.413 0.587 35 H 0.265 0.735 36 H 0.033 0.967 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.031 0.969 40 H 0.026 0.974 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.174 2.495 3.579 9.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.101 4.101 3 C -0.019 4.019 4 N -0.026 5.026 5 O -0.085 6.085 6 C 0.147 3.853 7 N -0.211 5.211 8 C 0.105 3.895 9 C -0.843 4.843 10 S 2.783 3.217 11 O -0.963 6.963 12 O -0.945 6.945 13 N -0.856 5.856 14 C 0.175 3.825 15 H 0.055 0.945 16 C -0.562 4.562 17 H 0.083 0.917 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.722 3.278 21 H -0.207 1.207 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.175 4.175 25 C -0.189 4.189 26 C 0.098 3.902 27 C -0.273 4.273 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.124 0.876 32 H 0.116 0.884 33 H 0.208 0.792 34 H 0.248 0.752 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.119 0.881 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.046 0.954 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -8.646 3.320 5.103 10.574 hybrid contribution 1.528 -0.613 -0.263 1.667 sum -7.118 2.708 4.840 9.024 Atomic orbital electron populations 1.21757 0.92608 1.03417 1.02904 1.20406 0.97295 0.86346 1.06011 1.24601 0.90862 0.97404 0.89021 1.80057 1.17225 0.88094 1.17195 1.89244 1.74093 1.29930 1.15215 1.20702 0.88407 0.89871 0.86363 1.66854 1.20653 1.31029 1.02563 1.22686 0.83708 0.94060 0.89028 1.32264 1.19447 1.02636 1.29942 1.01860 0.74032 0.73190 0.72617 1.93544 1.86535 1.40108 1.76135 1.93582 1.60229 1.57486 1.83162 1.55542 1.38217 1.28877 1.62961 1.18592 0.95734 0.75656 0.92506 0.94511 1.21219 0.91925 0.96937 1.46161 0.91692 1.24858 0.98427 0.95284 0.94943 1.69833 1.35828 1.00976 1.45615 0.86546 0.85009 0.77575 0.78646 1.20734 1.21025 1.19685 1.21963 0.97063 1.03179 0.95326 1.21568 1.01997 0.98361 0.96937 1.20958 0.82250 0.97274 0.89751 1.21386 1.14164 0.95848 0.95914 0.90473 0.92077 0.91757 0.87578 0.88422 0.79167 0.75214 0.92501 0.94857 0.88131 0.91885 0.94979 0.95445 0.81681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 37.16 0.37 -0.83 16 2 C -0.06 -0.61 6.54 -27.89 -0.18 -0.79 16 3 C 0.16 2.22 6.72 -80.17 -0.54 1.68 16 4 N -0.28 -4.26 12.81 34.88 0.45 -3.82 16 5 O -0.08 -1.42 12.05 7.77 0.09 -1.32 16 6 C 0.33 5.55 8.64 -16.40 -0.14 5.41 16 7 N -0.49 -8.10 10.38 -12.99 -0.13 -8.24 16 8 C 0.27 4.02 10.66 -17.49 -0.19 3.83 16 9 C -0.76 -11.69 5.85 -39.46 -0.23 -11.92 16 10 S 2.70 43.79 5.65 -107.50 -0.61 43.18 16 11 O -0.97 -16.46 17.29 -57.17 -0.99 -17.45 16 12 O -0.95 -17.40 16.75 -57.17 -0.96 -18.36 16 13 N -1.09 -19.06 4.75 -5.88 -0.03 -19.09 16 14 C 0.28 5.86 2.46 -69.08 -0.17 5.69 16 15 H 0.04 0.80 7.30 -51.93 -0.38 0.43 16 16 C -0.52 -12.17 7.50 -34.44 -0.26 -12.42 16 17 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 18 C 0.07 1.65 5.30 -17.82 -0.09 1.56 16 19 N -0.88 -22.08 11.31 55.43 0.63 -21.46 16 20 Si 0.89 19.45 29.54 -169.99 -5.02 14.43 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 C -0.14 -2.87 5.69 -26.73 -0.15 -3.02 16 25 C -0.13 -2.51 9.51 37.16 0.35 -2.16 16 26 C 0.13 1.90 9.12 -39.01 -0.36 1.54 16 27 C -0.27 -4.11 6.34 -105.14 -0.67 -4.77 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.19 2.26 7.60 -52.49 -0.40 1.86 16 34 H 0.41 6.51 8.68 -34.47 -0.30 6.21 16 35 H 0.26 6.40 8.31 -40.82 -0.34 6.06 16 36 H 0.03 0.68 7.80 -51.93 -0.40 0.27 16 37 H 0.10 2.36 6.03 -51.93 -0.31 2.05 16 38 H 0.06 1.28 7.12 -51.93 -0.37 0.91 16 39 H 0.03 0.55 7.59 -51.93 -0.39 0.16 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.17 2.20 7.70 -52.48 -0.40 1.80 16 LS Contribution 360.90 15.07 5.44 5.44 Total: -1.00 -29.47 360.90 -8.43 -37.91 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -5.04 Total: 4.97 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -2.26 Total: -16.20 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.91 Total: -52.60 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -1.85 Total: -37.13 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Atomic # 16 Polarization: 43.79 SS G_CDS: -0.61 Total: 43.18 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.47 -8.43 -37.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186424121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.187 kcal (2) G-P(sol) polarization free energy of solvation -29.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds