Wall clock time and date at job start Tue Mar 31 2020 22:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.46648 * 2 1 4 4 N 1.29766 * 126.34383 * 90.02778 * 3 2 1 5 5 O 1.41326 * 109.74939 * 180.02562 * 4 3 2 6 6 C 1.34795 * 109.45150 * 359.97438 * 5 4 3 7 7 N 1.32501 * 133.15002 * 180.02562 * 6 5 4 8 8 C 1.31637 * 121.68763 * 180.02562 * 7 6 5 9 9 C 1.38637 * 121.51563 * 359.97236 * 8 7 6 10 10 S 1.76205 * 120.30097 * 180.02562 * 9 8 7 11 11 O 1.42093 * 106.40371 * 336.45803 * 10 9 8 12 12 O 1.42102 * 106.39824 * 203.54003 * 10 9 8 13 13 N 1.65592 * 107.21926 * 90.00002 * 10 9 8 14 14 C 1.46504 * 120.00395 * 65.21339 * 13 10 9 15 15 H 1.09006 * 109.46758 * 336.26999 * 14 13 10 16 16 C 1.50699 * 109.47443 * 216.26501 * 14 13 10 17 17 H 1.07998 * 119.99652 * 0.02562 * 16 14 13 18 18 C 1.37879 * 119.99790 * 179.97438 * 16 14 13 19 19 N 1.31508 * 120.00323 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99731 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47282 * 89.99816 * 20 18 16 22 22 H 1.48499 * 109.47282 * 210.00115 * 20 18 16 23 23 H 1.48507 * 109.47210 * 329.99940 * 20 18 16 24 24 C 1.53002 * 109.47272 * 96.26374 * 14 13 10 25 25 C 1.52997 * 109.46868 * 58.48022 * 24 14 13 26 26 C 1.38178 * 119.39518 * 0.29780 * 9 8 7 27 27 C 1.39814 * 118.05930 * 359.47223 * 26 9 8 28 28 H 1.09006 * 109.46869 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47603 * 299.99400 * 1 2 3 30 30 H 1.08995 * 109.47540 * 60.00138 * 1 2 3 31 31 H 1.08992 * 109.47407 * 240.00432 * 2 1 3 32 32 H 1.08999 * 109.47114 * 119.99607 * 2 1 3 33 33 H 1.08002 * 119.24506 * 179.97438 * 8 7 6 34 34 H 0.97004 * 120.00147 * 245.21436 * 13 10 9 35 35 H 0.96995 * 120.00373 * 180.02562 * 19 18 16 36 36 H 1.09003 * 109.46949 * 298.48681 * 24 14 13 37 37 H 1.08993 * 109.47458 * 178.48740 * 24 14 13 38 38 H 1.09000 * 109.47091 * 55.72893 * 25 24 14 39 39 H 1.08999 * 109.47421 * 295.71987 * 25 24 14 40 40 H 1.09004 * 109.47256 * 175.72115 * 25 24 14 41 41 H 1.08004 * 120.97092 * 179.70287 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2889 2.1458 1.0452 5 8 2.7395 3.4230 0.6416 6 6 2.7615 3.4865 -0.7047 7 7 3.0980 4.4395 -1.5615 8 6 3.0315 4.2541 -2.8631 9 6 2.6058 3.0501 -3.4028 10 16 2.5297 2.8366 -5.1502 11 8 2.4119 4.1379 -5.7087 12 8 1.5861 1.8008 -5.3871 13 7 3.9998 2.2502 -5.6369 14 6 4.4401 0.9228 -5.2002 15 1 3.9255 0.6548 -4.2774 16 6 5.9276 0.9410 -4.9591 17 1 6.4888 1.8504 -5.1150 18 6 6.5717 -0.2032 -4.5384 19 7 5.8882 -1.3104 -4.3480 20 14 8.4154 -0.1804 -4.2388 21 1 8.6828 0.1913 -2.8262 22 1 8.9778 -1.5276 -4.5111 23 1 9.0513 0.8130 -5.1410 24 6 4.1117 -0.1057 -6.2844 25 6 4.8033 0.2913 -7.5901 26 6 2.2364 2.0210 -2.5579 27 6 2.3202 2.2395 -1.1795 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.3150 5.0584 -3.5258 34 1 4.5696 2.7855 -6.2111 35 1 6.3413 -2.1152 -4.0517 36 1 3.0333 -0.1381 -6.4398 37 1 4.4634 -1.0886 -5.9712 38 1 5.8741 0.3978 -7.4163 39 1 4.3965 1.2389 -7.9433 40 1 4.6322 -0.4800 -8.3411 41 1 1.8964 1.0742 -2.9509 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186424121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:36 Heat of formation + Delta-G solvation = -28.095950 kcal Electronic energy + Delta-G solvation = -28061.261066 eV Core-core repulsion = 24070.052725 eV Total energy + Delta-G solvation = -3991.208341 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.38300 -40.13152 -38.41108 -37.70836 -36.92960 -36.77623 -34.09229 -33.89278 -32.42008 -32.02619 -31.88739 -28.23415 -25.97551 -25.39262 -25.29436 -25.16977 -21.83004 -21.55305 -20.81818 -19.53269 -18.96261 -18.92209 -18.22683 -17.95647 -17.69424 -16.99941 -16.71646 -16.24866 -15.58145 -15.36465 -15.13786 -14.91152 -14.82481 -14.62082 -14.59571 -14.44436 -14.04239 -14.00738 -13.44171 -13.34267 -13.17800 -13.09234 -12.84059 -12.79207 -12.63845 -12.53084 -12.41742 -12.36521 -12.14967 -12.00933 -11.79817 -11.45153 -11.08483 -11.05115 -10.92472 -10.68345 -10.50722 -9.99835 -8.09268 -6.19398 -0.93477 -0.78833 -0.51108 0.63155 0.68848 1.42799 1.48549 1.53722 1.88622 2.17701 2.34874 2.47039 2.60520 2.74174 3.07462 3.21563 3.23329 3.47054 3.49377 3.78587 4.02869 4.14238 4.19193 4.31943 4.38553 4.50890 4.70902 4.75444 4.81475 4.86837 4.93783 4.94357 4.98129 5.26652 5.31664 5.53749 5.64026 5.66053 5.76342 5.79588 6.13379 6.14901 6.17631 6.47307 6.89508 7.48442 8.94696 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009615 B = 0.005023 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.447942 B = 5572.651132 C = 6632.543908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.064 4.064 3 C 0.174 3.826 4 N -0.292 5.292 5 O -0.106 6.106 6 C 0.312 3.688 7 N -0.506 5.506 8 C 0.269 3.731 9 C -0.763 4.763 10 S 2.723 3.277 11 O -0.975 6.975 12 O -0.972 6.972 13 N -1.093 6.093 14 C 0.283 3.717 15 H 0.029 0.971 16 C -0.525 4.525 17 H 0.066 0.934 18 C 0.030 3.970 19 N -0.905 5.905 20 Si 0.939 3.061 21 H -0.288 1.288 22 H -0.287 1.287 23 H -0.267 1.267 24 C -0.136 4.136 25 C -0.127 4.127 26 C 0.124 3.876 27 C -0.274 4.274 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.219 0.781 34 H 0.421 0.579 35 H 0.263 0.737 36 H 0.036 0.964 37 H 0.076 0.924 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.039 0.961 41 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.515 2.436 3.061 9.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 C -0.007 4.007 4 N -0.042 5.042 5 O -0.105 6.105 6 C 0.130 3.870 7 N -0.226 5.226 8 C 0.105 3.895 9 C -0.849 4.849 10 S 2.809 3.191 11 O -0.965 6.965 12 O -0.962 6.962 13 N -0.855 5.855 14 C 0.178 3.822 15 H 0.046 0.954 16 C -0.565 4.565 17 H 0.084 0.916 18 C -0.171 4.171 19 N -0.544 5.544 20 Si 0.767 3.233 21 H -0.214 1.214 22 H -0.213 1.213 23 H -0.192 1.192 24 C -0.175 4.175 25 C -0.185 4.185 26 C 0.096 3.904 27 C -0.281 4.281 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.235 0.765 34 H 0.257 0.743 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -8.974 3.294 4.552 10.588 hybrid contribution 1.585 -0.583 -0.097 1.692 sum -7.389 2.711 4.455 9.044 Atomic orbital electron populations 1.21777 0.91088 1.04868 1.02634 1.20691 0.98438 0.83910 1.07186 1.25219 0.89232 0.98507 0.87786 1.80061 1.18699 0.87687 1.17765 1.89206 1.74585 1.31238 1.15459 1.20974 0.88821 0.90689 0.86529 1.66892 1.21299 1.31365 1.03093 1.23187 0.82808 0.94617 0.88858 1.32164 1.20265 1.03203 1.29282 1.01055 0.73090 0.72556 0.72413 1.93540 1.86397 1.40076 1.76525 1.93558 1.60733 1.58228 1.83709 1.55374 1.38699 1.27983 1.63449 1.18343 0.94527 0.77103 0.92259 0.95373 1.21496 0.93216 0.96675 1.45089 0.91599 1.25388 1.00953 0.95408 0.95388 1.69926 1.36644 1.01242 1.46612 0.85845 0.82161 0.77331 0.77993 1.21432 1.21272 1.19192 1.21897 0.97343 1.02016 0.96288 1.21515 1.00871 0.99768 0.96326 1.21212 0.81711 0.97839 0.89672 1.21573 1.14240 0.95796 0.96482 0.88152 0.92233 0.92177 0.86771 0.86839 0.76459 0.74272 0.92747 0.94486 0.90614 0.93278 0.93144 0.94176 0.80167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.89 71.98 0.71 -1.34 16 2 C -0.06 -1.13 6.54 29.85 0.20 -0.94 16 3 C 0.17 4.60 6.72 45.00 0.30 4.90 16 4 N -0.29 -8.87 12.81 -43.55 -0.56 -9.43 16 5 O -0.11 -3.66 12.05 30.19 0.36 -3.29 16 6 C 0.31 10.52 8.64 85.15 0.74 11.26 16 7 N -0.51 -16.46 10.38 -308.22 -3.20 -19.66 16 8 C 0.27 7.69 10.66 84.82 0.90 8.59 16 9 C -0.76 -22.54 5.85 22.35 0.13 -22.41 16 10 S 2.72 83.66 5.65 -56.49 -0.32 83.34 16 11 O -0.98 -30.85 17.29 -128.00 -2.21 -33.06 16 12 O -0.97 -33.85 16.75 -128.00 -2.14 -35.99 16 13 N -1.09 -36.27 4.75 -172.51 -0.82 -37.09 16 14 C 0.28 11.57 2.46 44.24 0.11 11.68 16 15 H 0.03 1.21 7.30 -2.38 -0.02 1.20 16 16 C -0.53 -23.92 7.50 25.60 0.19 -23.73 16 17 H 0.07 2.93 7.81 -2.91 -0.02 2.91 16 18 C 0.03 1.41 5.30 84.66 0.45 1.86 16 19 N -0.91 -45.02 11.31 21.45 0.24 -44.78 16 20 Si 0.94 39.41 29.54 68.60 2.03 41.43 16 21 H -0.29 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 24 C -0.14 -5.60 5.69 30.59 0.17 -5.42 16 25 C -0.13 -4.67 9.51 71.98 0.68 -3.98 16 26 C 0.12 3.60 9.12 22.64 0.21 3.81 16 27 C -0.27 -8.29 6.34 -20.20 -0.13 -8.42 16 28 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.11 1.87 8.14 -2.39 -0.02 1.86 16 32 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.22 4.75 7.60 -2.91 -0.02 4.72 16 34 H 0.42 12.45 8.68 -96.74 -0.84 11.61 16 35 H 0.26 12.69 8.31 -92.71 -0.77 11.92 16 36 H 0.04 1.47 7.80 -2.39 -0.02 1.45 16 37 H 0.08 3.54 6.03 -2.39 -0.01 3.52 16 38 H 0.05 1.92 7.12 -2.39 -0.02 1.90 16 39 H 0.05 1.63 7.59 -2.39 -0.02 1.61 16 40 H 0.04 1.33 8.14 -2.38 -0.02 1.32 16 41 H 0.18 4.58 7.70 -2.91 -0.02 4.56 16 Total: -1.00 -61.20 360.90 -1.71 -62.91 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.24 Total: 19.77 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: 4.67 Total: -24.15 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -4.33 Total: -110.96 kcal Atomic # 8 Polarization: -68.35 SS G_CDS: -3.99 Total: -72.34 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.43 kcal Atomic # 16 Polarization: 83.66 SS G_CDS: -0.32 Total: 83.34 kcal Total: -61.20 -1.71 -62.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186424121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.815 kcal (2) G-P(sol) polarization free energy of solvation -61.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds