Wall clock time and date at job start Tue Mar 31 2020 22:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.46978 * 2 1 4 4 H 1.08999 * 109.47297 * 305.00480 * 3 2 1 5 5 O 1.42903 * 109.46878 * 65.00359 * 3 2 1 6 6 C 1.35932 * 116.99841 * 260.42884 * 5 3 2 7 7 C 1.38706 * 120.05847 * 5.66869 * 6 5 3 8 8 C 1.38150 * 119.95445 * 179.70272 * 7 6 5 9 9 C 1.38274 * 120.07731 * 0.57226 * 8 7 6 10 10 C 1.38243 * 120.11886 * 359.72488 * 9 8 7 11 11 C 1.38253 * 120.04300 * 359.97438 * 10 9 8 12 12 Cl 1.73605 * 120.04132 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47128 * 184.99594 * 3 2 1 14 14 O 1.21276 * 120.00317 * 245.00286 * 13 3 2 15 15 N 1.34781 * 119.99163 * 65.00475 * 13 3 2 16 16 C 1.47062 * 136.06148 * 359.62812 * 15 13 3 17 17 C 1.53239 * 88.08538 * 207.20359 * 16 15 13 18 18 O 1.42900 * 114.19519 * 87.72524 * 17 16 15 19 19 C 1.50700 * 114.32893 * 220.47038 * 17 16 15 20 20 H 1.07998 * 119.99683 * 93.76166 * 19 17 16 21 21 C 1.37870 * 120.00226 * 273.75757 * 19 17 16 22 22 N 1.31521 * 119.99662 * 0.02562 * 21 19 17 23 23 Si 1.86794 * 120.00286 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47368 * 59.99888 * 23 21 19 25 25 H 1.48503 * 109.47339 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46984 * 299.99964 * 23 21 19 27 27 C 1.47070 * 136.04855 * 180.02562 * 15 13 3 28 28 H 1.09001 * 109.46936 * 299.99828 * 1 2 3 29 29 H 1.09001 * 109.46805 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46955 * 59.99764 * 1 2 3 31 31 H 1.09001 * 109.46955 * 120.00236 * 2 1 3 32 32 H 1.09001 * 109.46936 * 240.00172 * 2 1 3 33 33 H 1.08000 * 120.01928 * 359.97438 * 7 6 5 34 34 H 1.08002 * 119.96361 * 180.30185 * 8 7 6 35 35 H 1.07999 * 119.94031 * 179.74898 * 9 8 7 36 36 H 1.08002 * 119.98105 * 179.97438 * 10 9 8 37 37 H 1.09000 * 113.46780 * 321.93273 * 16 15 13 38 38 H 1.08999 * 113.46895 * 92.37655 * 16 15 13 39 39 H 0.96699 * 113.99628 * 86.31049 * 18 17 16 40 40 H 0.97000 * 120.00032 * 180.02562 * 22 21 19 41 41 H 1.09000 * 113.46565 * 267.61657 * 27 15 13 42 42 H 1.08991 * 113.47186 * 38.00801 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 8 1.6620 2.0813 1.2211 6 6 0.5683 2.8875 1.1829 7 6 -0.1950 2.9687 0.0276 8 6 -1.3097 3.7841 -0.0069 9 6 -1.6586 4.5282 1.1051 10 6 -0.8966 4.4544 2.2562 11 6 0.2164 3.6353 2.2982 12 17 1.1729 3.5421 3.7440 13 6 3.5420 1.4443 -0.1237 14 8 4.2251 1.8611 0.7876 15 7 4.1260 0.9828 -1.2474 16 6 3.6661 0.4110 -2.5218 17 6 5.0024 -0.3336 -2.6109 18 8 5.0085 -1.6058 -1.9601 19 6 5.6028 -0.3685 -3.9927 20 1 6.3206 0.3822 -4.2887 21 6 5.2358 -1.3588 -4.8790 22 7 4.3614 -2.2727 -4.5186 23 14 5.9805 -1.4024 -6.5915 24 1 7.4551 -1.5433 -6.4867 25 1 5.4248 -2.5560 -7.3437 26 1 5.6532 -0.1424 -7.3059 27 6 5.5041 0.8230 -1.7355 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 0.0795 2.3915 -0.8430 34 1 -1.9068 3.8436 -0.9048 35 1 -2.5281 5.1680 1.0744 36 1 -1.1709 5.0370 3.1233 37 1 2.8076 -0.2522 -2.4154 38 1 3.5302 1.1545 -3.3072 39 1 4.6920 -2.3324 -2.5141 40 1 4.1034 -2.9697 -5.1420 41 1 5.8632 1.6774 -2.3092 42 1 6.2052 0.5104 -0.9618 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186820940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:09 Heat of formation + Delta-G solvation = -56.847525 kcal Electronic energy + Delta-G solvation = -27586.914749 eV Core-core repulsion = 23560.123188 eV Total energy + Delta-G solvation = -4026.791560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.107 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -40.80091 -39.57891 -38.08188 -36.92165 -36.37038 -34.19661 -33.63886 -32.26116 -30.98317 -30.21440 -29.21112 -27.11887 -25.28397 -25.07733 -23.44006 -22.61285 -21.62559 -20.17009 -18.75899 -18.48463 -17.56923 -16.60435 -16.45345 -16.05090 -15.77596 -15.40123 -15.01378 -14.82322 -14.64882 -14.22429 -14.19877 -13.83249 -13.55820 -13.12901 -12.90616 -12.68534 -12.49818 -12.35272 -12.11045 -11.95921 -11.85057 -11.62674 -11.55998 -11.50253 -11.18964 -11.09175 -10.91800 -10.85739 -10.59298 -10.51106 -10.30710 -9.65464 -9.24979 -9.06262 -8.84623 -8.48573 -8.29268 -7.95540 -6.47606 -4.58068 0.93492 1.11904 2.13900 2.68095 3.00019 3.11406 3.17816 3.20398 3.42512 3.67046 4.12226 4.49782 4.56502 4.67786 4.73396 4.80623 4.84848 4.96000 5.03031 5.20152 5.28420 5.37757 5.48793 5.50804 5.64947 5.80094 5.87040 5.94802 5.97629 6.04057 6.08793 6.18033 6.20382 6.34560 6.37966 6.42372 6.52014 6.61524 7.01712 7.18421 7.55798 7.72499 8.35617 8.45741 8.62328 9.13583 9.41370 10.59050 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019955 B = 0.002874 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.818855 B = 9741.758494 C =10291.901822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.141 4.141 3 C 0.073 3.927 4 H 0.099 0.901 5 O -0.269 6.269 6 C 0.147 3.853 7 C -0.204 4.204 8 C -0.074 4.074 9 C -0.152 4.152 10 C -0.074 4.074 11 C -0.072 4.072 12 Cl -0.055 7.055 13 C 0.535 3.465 14 O -0.538 6.538 15 N -0.632 5.632 16 C 0.066 3.934 17 C 0.243 3.757 18 O -0.570 6.570 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.898 5.898 23 Si 0.910 3.090 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.110 3.890 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.142 0.858 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.394 0.606 40 H 0.275 0.725 41 H 0.087 0.913 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.677 8.757 5.948 17.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.178 4.178 3 C 0.014 3.986 4 H 0.116 0.884 5 O -0.181 6.181 6 C 0.100 3.900 7 C -0.223 4.223 8 C -0.092 4.092 9 C -0.171 4.171 10 C -0.093 4.093 11 C -0.099 4.099 12 Cl -0.026 7.026 13 C 0.323 3.677 14 O -0.415 6.415 15 N -0.367 5.367 16 C -0.057 4.057 17 C 0.200 3.800 18 O -0.383 6.383 19 C -0.573 4.573 20 H 0.091 0.909 21 C -0.130 4.130 22 N -0.539 5.539 23 Si 0.736 3.264 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.012 4.012 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.160 0.840 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.251 0.749 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.060 9.164 7.355 17.568 hybrid contribution -0.007 -0.368 -1.510 1.554 sum -13.067 8.797 5.846 16.802 Atomic orbital electron populations 1.21918 0.94781 1.02567 1.01758 1.22037 0.96803 0.93764 1.05228 1.22381 0.93902 0.95437 0.86927 0.88393 1.86304 1.41380 1.57334 1.33073 1.18814 0.87659 0.90417 0.93124 1.21428 0.98174 1.04631 0.98036 1.21036 0.95415 0.94242 0.98509 1.20993 1.01143 1.01987 0.92966 1.20907 0.92472 0.96780 0.99144 1.20225 0.97736 1.03046 0.88887 1.98380 1.71271 1.97594 1.35345 1.19521 0.88393 0.77965 0.81857 1.90692 1.64724 1.47378 1.38744 1.49607 1.11653 1.60663 1.14776 1.24328 1.03037 0.96441 0.81912 1.19451 0.89126 0.81720 0.89656 1.86061 1.88870 1.18333 1.45068 1.21387 1.26386 1.13281 0.96246 0.90929 1.25068 0.93796 0.94558 0.99538 1.69247 1.31950 1.15417 1.37238 0.86357 0.79694 0.77853 0.82458 1.19795 1.20964 1.19862 1.23366 0.83765 0.98119 0.95936 0.92452 0.91737 0.92449 0.90070 0.88495 0.84031 0.85130 0.85093 0.84485 0.91374 0.89875 0.74939 0.91462 0.89530 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.49 37.16 0.32 -1.47 16 2 C -0.14 -2.06 5.59 -26.73 -0.15 -2.21 16 3 C 0.07 1.18 2.38 -27.88 -0.07 1.12 16 4 H 0.10 1.37 5.42 -51.93 -0.28 1.09 16 5 O -0.27 -4.54 8.57 -39.39 -0.34 -4.88 16 6 C 0.15 2.08 5.65 -39.20 -0.22 1.85 16 7 C -0.20 -2.34 7.38 -39.44 -0.29 -2.63 16 8 C -0.07 -0.68 10.04 -39.60 -0.40 -1.08 16 9 C -0.15 -1.33 10.04 -39.57 -0.40 -1.72 16 10 C -0.07 -0.75 9.83 -39.57 -0.39 -1.14 16 11 C -0.07 -0.94 6.33 -39.36 -0.25 -1.19 16 12 Cl -0.05 -0.77 28.51 -51.86 -1.48 -2.25 16 13 C 0.54 10.95 7.43 -10.98 -0.08 10.86 16 14 O -0.54 -12.94 17.28 -14.30 -0.25 -13.19 16 15 N -0.63 -12.84 3.65 -185.36 -0.68 -13.51 16 16 C 0.07 1.30 7.47 -8.63 -0.06 1.24 16 17 C 0.24 5.52 1.57 -91.40 -0.14 5.38 16 18 O -0.57 -14.05 13.54 -35.23 -0.48 -14.53 16 19 C -0.53 -12.78 8.69 -34.44 -0.30 -13.08 16 20 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 21 C 0.07 1.73 5.39 -17.82 -0.10 1.64 16 22 N -0.90 -21.62 11.01 55.43 0.61 -21.01 16 23 Si 0.91 18.67 29.54 -169.99 -5.02 13.65 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 25 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 27 C 0.11 2.33 8.03 -8.50 -0.07 2.26 16 28 H 0.06 0.69 6.55 -51.93 -0.34 0.35 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.58 6.74 -51.93 -0.35 0.23 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.10 1.51 5.63 -51.93 -0.29 1.21 16 33 H 0.14 1.50 4.29 -52.49 -0.22 1.27 16 34 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 36 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.07 1.31 6.11 -51.93 -0.32 0.99 16 38 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 39 H 0.39 9.79 6.32 45.56 0.29 10.08 16 40 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 41 H 0.09 1.67 8.10 -51.93 -0.42 1.25 16 42 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 359.71 15.07 5.42 5.42 Total: -1.00 -28.54 359.71 -9.25 -37.78 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -4.44 Total: 12.70 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -2.60 Total: -0.17 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: -0.07 Total: -34.53 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -1.06 Total: -32.60 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.48 Total: -2.25 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.54 -9.25 -37.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186820940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.063 kcal (2) G-P(sol) polarization free energy of solvation -28.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds