Wall clock time and date at job start Tue Mar 31 2020 22:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.46978 * 2 1 4 4 H 1.08999 * 109.47297 * 305.00480 * 3 2 1 5 5 O 1.42903 * 109.46878 * 65.00359 * 3 2 1 6 6 C 1.35932 * 116.99841 * 260.42884 * 5 3 2 7 7 C 1.38706 * 120.05847 * 5.66869 * 6 5 3 8 8 C 1.38150 * 119.95445 * 179.70272 * 7 6 5 9 9 C 1.38274 * 120.07731 * 0.57226 * 8 7 6 10 10 C 1.38243 * 120.11886 * 359.72488 * 9 8 7 11 11 C 1.38253 * 120.04300 * 359.97438 * 10 9 8 12 12 Cl 1.73605 * 120.04132 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47128 * 184.99594 * 3 2 1 14 14 O 1.21276 * 120.00317 * 245.00286 * 13 3 2 15 15 N 1.34781 * 119.99163 * 65.00475 * 13 3 2 16 16 C 1.47062 * 136.06148 * 359.62812 * 15 13 3 17 17 C 1.53239 * 88.08538 * 207.20359 * 16 15 13 18 18 O 1.42900 * 114.19519 * 87.72524 * 17 16 15 19 19 C 1.50700 * 114.32893 * 220.47038 * 17 16 15 20 20 H 1.07998 * 119.99683 * 93.76166 * 19 17 16 21 21 C 1.37870 * 120.00226 * 273.75757 * 19 17 16 22 22 N 1.31521 * 119.99662 * 0.02562 * 21 19 17 23 23 Si 1.86794 * 120.00286 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47368 * 59.99888 * 23 21 19 25 25 H 1.48503 * 109.47339 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46984 * 299.99964 * 23 21 19 27 27 C 1.47070 * 136.04855 * 180.02562 * 15 13 3 28 28 H 1.09001 * 109.46936 * 299.99828 * 1 2 3 29 29 H 1.09001 * 109.46805 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46955 * 59.99764 * 1 2 3 31 31 H 1.09001 * 109.46955 * 120.00236 * 2 1 3 32 32 H 1.09001 * 109.46936 * 240.00172 * 2 1 3 33 33 H 1.08000 * 120.01928 * 359.97438 * 7 6 5 34 34 H 1.08002 * 119.96361 * 180.30185 * 8 7 6 35 35 H 1.07999 * 119.94031 * 179.74898 * 9 8 7 36 36 H 1.08002 * 119.98105 * 179.97438 * 10 9 8 37 37 H 1.09000 * 113.46780 * 321.93273 * 16 15 13 38 38 H 1.08999 * 113.46895 * 92.37655 * 16 15 13 39 39 H 0.96699 * 113.99628 * 86.31049 * 18 17 16 40 40 H 0.97000 * 120.00032 * 180.02562 * 22 21 19 41 41 H 1.09000 * 113.46565 * 267.61657 * 27 15 13 42 42 H 1.08991 * 113.47186 * 38.00801 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 8 1.6620 2.0813 1.2211 6 6 0.5683 2.8875 1.1829 7 6 -0.1950 2.9687 0.0276 8 6 -1.3097 3.7841 -0.0069 9 6 -1.6586 4.5282 1.1051 10 6 -0.8966 4.4544 2.2562 11 6 0.2164 3.6353 2.2982 12 17 1.1729 3.5421 3.7440 13 6 3.5420 1.4443 -0.1237 14 8 4.2251 1.8611 0.7876 15 7 4.1260 0.9828 -1.2474 16 6 3.6661 0.4110 -2.5218 17 6 5.0024 -0.3336 -2.6109 18 8 5.0085 -1.6058 -1.9601 19 6 5.6028 -0.3685 -3.9927 20 1 6.3206 0.3822 -4.2887 21 6 5.2358 -1.3588 -4.8790 22 7 4.3614 -2.2727 -4.5186 23 14 5.9805 -1.4024 -6.5915 24 1 7.4551 -1.5433 -6.4867 25 1 5.4248 -2.5560 -7.3437 26 1 5.6532 -0.1424 -7.3059 27 6 5.5041 0.8230 -1.7355 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 0.0795 2.3915 -0.8430 34 1 -1.9068 3.8436 -0.9048 35 1 -2.5281 5.1680 1.0744 36 1 -1.1709 5.0370 3.1233 37 1 2.8076 -0.2522 -2.4154 38 1 3.5302 1.1545 -3.3072 39 1 4.6920 -2.3324 -2.5141 40 1 4.1034 -2.9697 -5.1420 41 1 5.8632 1.6774 -2.3092 42 1 6.2052 0.5104 -0.9618 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186820940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:06 Heat of formation + Delta-G solvation = -73.844315 kcal Electronic energy + Delta-G solvation = -27587.651785 eV Core-core repulsion = 23560.123188 eV Total energy + Delta-G solvation = -4027.528596 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.107 amu Computer time = 3.62 seconds Orbital eigenvalues (eV) -42.00408 -41.02525 -39.38341 -38.31890 -37.33984 -35.96171 -34.84040 -34.11119 -31.80003 -31.18285 -30.71771 -28.50692 -26.95990 -26.67325 -24.35393 -23.47987 -22.88560 -21.69727 -20.06769 -19.79221 -19.30810 -18.04106 -17.63507 -17.17277 -17.03746 -16.90797 -16.43718 -16.23987 -15.92965 -15.68708 -15.11097 -14.98975 -14.73537 -14.56567 -14.47237 -14.15087 -13.81564 -13.50030 -13.39164 -13.36144 -13.10174 -12.87280 -12.80581 -12.73638 -12.50796 -12.38423 -12.21647 -12.19686 -11.96709 -11.89901 -11.58208 -11.35370 -10.91084 -10.63678 -10.24036 -9.89557 -9.66963 -9.22738 -8.26735 -6.43364 0.13096 0.28199 1.17888 1.39638 1.42852 1.49872 1.53553 1.59741 2.31182 2.42623 2.62849 2.94958 3.22614 3.47340 3.62897 3.73248 3.79095 3.87569 4.05715 4.14788 4.24045 4.28832 4.34543 4.42860 4.44645 4.56653 4.64391 4.74451 4.76743 4.83891 4.87195 4.97370 5.05449 5.10486 5.23400 5.25341 5.26897 5.43314 5.67645 5.73850 5.91315 6.16393 6.61754 6.74366 6.99436 7.30331 7.50604 8.79204 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019955 B = 0.002874 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.818855 B = 9741.758494 C =10291.901822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.084 3.916 4 H 0.123 0.877 5 O -0.297 6.297 6 C 0.113 3.887 7 C -0.207 4.207 8 C -0.067 4.067 9 C -0.139 4.139 10 C -0.075 4.075 11 C -0.093 4.093 12 Cl -0.078 7.078 13 C 0.526 3.474 14 O -0.583 6.583 15 N -0.630 5.630 16 C 0.082 3.918 17 C 0.223 3.777 18 O -0.586 6.586 19 C -0.554 4.554 20 H 0.074 0.926 21 C 0.036 3.964 22 N -0.914 5.914 23 Si 0.968 3.032 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.266 1.266 27 C 0.106 3.894 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.149 0.851 34 H 0.165 0.835 35 H 0.168 0.832 36 H 0.157 0.843 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.390 0.610 40 H 0.277 0.723 41 H 0.106 0.894 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.461 10.071 4.138 19.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.025 3.975 4 H 0.141 0.859 5 O -0.210 6.210 6 C 0.067 3.933 7 C -0.226 4.226 8 C -0.085 4.085 9 C -0.157 4.157 10 C -0.094 4.094 11 C -0.120 4.120 12 Cl -0.049 7.049 13 C 0.316 3.684 14 O -0.464 6.464 15 N -0.364 5.364 16 C -0.041 4.041 17 C 0.181 3.819 18 O -0.399 6.399 19 C -0.592 4.592 20 H 0.092 0.908 21 C -0.165 4.165 22 N -0.555 5.555 23 Si 0.793 3.207 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.191 1.191 27 C -0.017 4.017 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.167 0.833 34 H 0.183 0.817 35 H 0.186 0.814 36 H 0.175 0.825 37 H 0.094 0.906 38 H 0.118 0.882 39 H 0.246 0.754 40 H 0.087 0.913 41 H 0.124 0.876 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.868 10.487 5.538 19.810 hybrid contribution 0.816 -0.722 -0.918 1.425 sum -15.052 9.765 4.621 18.527 Atomic orbital electron populations 1.21862 0.91992 1.03565 1.02596 1.21975 0.99121 0.92461 1.03682 1.22267 0.90476 0.96655 0.88082 0.85950 1.86258 1.43158 1.58454 1.33124 1.19139 0.87920 0.91461 0.94741 1.21589 0.98612 1.05209 0.97151 1.21480 0.94449 0.92699 0.99891 1.21472 1.01292 1.01175 0.91763 1.21249 0.91424 0.96006 1.00689 1.20569 0.98850 1.04469 0.88160 1.98364 1.72162 1.97764 1.36615 1.20422 0.90385 0.76753 0.80877 1.90656 1.66263 1.49402 1.40097 1.49635 1.11255 1.60428 1.15100 1.24163 1.01688 0.96351 0.81856 1.19700 0.91257 0.81279 0.89619 1.86051 1.89135 1.19174 1.45531 1.21601 1.26908 1.13830 0.96818 0.90800 1.25704 0.94077 0.94215 1.02465 1.69303 1.32426 1.15622 1.38099 0.85444 0.78441 0.77980 0.78797 1.20325 1.20819 1.19079 1.23424 0.84231 0.98461 0.95537 0.92793 0.90663 0.90323 0.92179 0.89397 0.83323 0.81726 0.81429 0.82508 0.90627 0.88161 0.75377 0.91274 0.87594 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.49 71.99 0.61 -2.47 16 2 C -0.13 -3.93 5.59 30.60 0.17 -3.76 16 3 C 0.08 2.73 2.38 29.85 0.07 2.80 16 4 H 0.12 3.26 5.42 -2.39 -0.01 3.25 16 5 O -0.30 -10.19 8.57 -73.79 -0.63 -10.82 16 6 C 0.11 3.11 5.65 22.52 0.13 3.24 16 7 C -0.21 -4.20 7.38 22.36 0.17 -4.03 16 8 C -0.07 -0.95 10.04 22.26 0.22 -0.72 16 9 C -0.14 -1.81 10.04 22.28 0.22 -1.59 16 10 C -0.08 -1.34 9.83 22.27 0.22 -1.12 16 11 C -0.09 -2.40 6.33 22.41 0.14 -2.26 16 12 Cl -0.08 -2.24 28.51 -2.72 -0.08 -2.31 16 13 C 0.53 22.01 7.43 87.66 0.65 22.66 16 14 O -0.58 -29.28 17.28 15.97 0.28 -29.00 16 15 N -0.63 -25.82 3.65 -859.21 -3.14 -28.96 16 16 C 0.08 3.18 7.47 83.10 0.62 3.80 16 17 C 0.22 10.20 1.57 -11.30 -0.02 10.19 16 18 O -0.59 -29.51 13.54 -148.98 -2.02 -31.53 16 19 C -0.55 -26.24 8.69 25.60 0.22 -26.02 16 20 H 0.07 3.39 7.81 -2.91 -0.02 3.37 16 21 C 0.04 1.69 5.39 84.65 0.46 2.15 16 22 N -0.91 -43.55 11.01 21.45 0.24 -43.32 16 23 Si 0.97 37.50 29.54 68.60 2.03 39.53 16 24 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 25 H -0.28 -10.81 7.11 99.48 0.71 -10.11 16 26 H -0.27 -9.93 7.11 99.48 0.71 -9.23 16 27 C 0.11 4.55 8.03 83.18 0.67 5.22 16 28 H 0.05 1.22 6.55 -2.39 -0.02 1.20 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.08 1.35 6.74 -2.39 -0.02 1.34 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.09 2.71 5.63 -2.39 -0.01 2.69 16 33 H 0.15 2.68 4.29 -2.91 -0.01 2.67 16 34 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 35 H 0.17 1.00 8.06 -2.91 -0.02 0.97 16 36 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.08 2.83 6.11 -2.39 -0.01 2.82 16 38 H 0.10 3.57 8.10 -2.39 -0.02 3.55 16 39 H 0.39 19.79 6.32 -74.06 -0.47 19.32 16 40 H 0.28 12.57 8.31 -92.71 -0.77 11.80 16 41 H 0.11 4.08 8.10 -2.39 -0.02 4.06 16 42 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -63.74 359.71 1.84 -61.90 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: 0.61 Total: 36.43 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 4.56 Total: 8.08 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -2.90 Total: -72.28 kcal Atomic # 8 Polarization: -68.98 SS G_CDS: -2.37 Total: -71.35 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 2.03 Total: 39.53 kcal Atomic # 17 Polarization: -2.24 SS G_CDS: -0.08 Total: -2.31 kcal Total: -63.74 1.84 -61.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186820940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.942 kcal (2) G-P(sol) polarization free energy of solvation -63.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.62 seconds