Wall clock time and date at job start Tue Mar 31 2020 22:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46867 * 2 1 4 4 H 1.08999 * 109.55843 * 55.21387 * 3 2 1 5 5 C 1.53659 * 109.48988 * 175.62702 * 3 2 1 6 6 N 1.46386 * 109.25037 * 178.19617 * 5 3 2 7 7 S 1.65597 * 119.69833 * 115.72307 * 6 5 3 8 8 O 1.42093 * 104.27757 * 153.65511 * 7 6 5 9 9 O 1.42105 * 104.27889 * 25.79552 * 7 6 5 10 10 C 1.81401 * 104.44946 * 269.72666 * 7 6 5 11 11 C 1.53001 * 109.47441 * 180.02562 * 10 7 6 12 12 C 1.50697 * 109.46995 * 180.02562 * 11 10 7 13 13 H 1.07991 * 120.00449 * 359.72153 * 12 11 10 14 14 C 1.37885 * 119.99686 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 11 17 17 H 1.48493 * 109.47326 * 90.00142 * 16 14 12 18 18 H 1.48506 * 109.46545 * 209.99892 * 16 14 12 19 19 H 1.48498 * 109.47210 * 329.99603 * 16 14 12 20 20 C 1.46386 * 120.60181 * 295.44531 * 6 5 3 21 21 C 1.53178 * 109.51059 * 64.54833 * 20 6 5 22 22 H 1.08998 * 109.55734 * 61.68875 * 21 20 6 23 23 C 1.52999 * 109.56020 * 181.90082 * 21 20 6 24 24 S 1.81666 * 109.55724 * 294.99747 * 3 2 1 25 25 O 1.42095 * 108.65285 * 70.25207 * 24 3 2 26 26 O 1.42104 * 108.65381 * 298.94906 * 24 3 2 27 27 H 1.09010 * 109.47056 * 60.00092 * 1 2 3 28 28 H 1.08998 * 109.47356 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47458 * 300.00178 * 1 2 3 30 30 H 1.08999 * 109.46737 * 239.99907 * 2 1 3 31 31 H 1.08993 * 109.46763 * 119.99944 * 2 1 3 32 32 H 1.09010 * 109.59822 * 58.26446 * 5 3 2 33 33 H 1.09000 * 109.59109 * 298.13089 * 5 3 2 34 34 H 1.08998 * 109.47401 * 59.99842 * 10 7 6 35 35 H 1.09006 * 109.47274 * 300.00142 * 10 7 6 36 36 H 1.08998 * 109.47065 * 59.99498 * 11 10 7 37 37 H 1.09001 * 109.46892 * 299.99762 * 11 10 7 38 38 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.46321 * 184.56318 * 20 6 5 40 40 H 1.09003 * 109.46411 * 304.53817 * 20 6 5 41 41 H 1.09002 * 109.46688 * 60.00703 * 23 21 20 42 42 H 1.08996 * 109.47173 * 179.97438 * 23 21 20 43 43 H 1.08994 * 109.46999 * 300.00189 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6091 1.9819 0.8435 5 6 3.5726 1.4445 0.1104 6 7 4.0579 2.8249 0.0666 7 16 4.8240 3.4675 1.3866 8 8 5.6684 4.4744 0.8459 9 8 5.3668 2.3401 2.0601 10 6 3.4910 4.2128 2.3654 11 6 4.0785 4.8482 3.6271 12 6 2.9710 5.4667 4.4406 13 1 1.9507 5.4160 4.0903 14 6 3.2609 6.1020 5.6295 15 7 4.5034 6.1633 6.0563 16 14 1.8890 6.8753 6.6340 17 1 1.3488 5.8737 7.5879 18 1 2.4224 8.0388 7.3871 19 1 0.8053 7.3285 5.7255 20 6 3.8774 3.6405 -1.1355 21 6 2.3824 3.8681 -1.3796 22 1 1.9535 4.4101 -0.5368 23 6 2.1906 4.6803 -2.6619 24 16 1.5606 2.2570 -1.5515 25 8 0.1544 2.4608 -1.5422 26 8 2.1559 1.5566 -2.6353 27 1 -0.3634 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9998 0.8828 -0.7204 33 1 3.8718 0.9840 1.0520 34 1 2.7726 3.4428 2.6468 35 1 2.9896 4.9783 1.7732 36 1 4.7967 5.6183 3.3454 37 1 4.5801 4.0829 4.2195 38 1 4.7073 6.6098 6.8929 39 1 4.3738 4.6014 -1.0004 40 1 4.3110 3.1251 -1.9926 41 1 2.6165 4.1353 -3.5043 42 1 1.1264 4.8411 -2.8345 43 1 2.6921 5.6427 -2.5608 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344893752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:52 Heat of formation + Delta-G solvation = -152.661717 kcal Electronic energy + Delta-G solvation = -27310.051817 eV Core-core repulsion = 23416.593099 eV Total energy + Delta-G solvation = -3893.458718 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.105 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -38.40085 -37.15826 -36.98473 -36.34529 -35.69002 -35.56716 -34.02328 -33.04775 -31.29246 -29.42321 -26.75460 -25.75029 -23.81408 -22.86627 -21.89640 -21.56790 -19.24287 -18.75274 -17.98125 -17.45353 -16.85646 -16.63914 -16.31030 -15.99980 -15.50308 -15.06039 -14.82192 -14.63889 -14.39059 -13.98747 -13.63916 -13.55665 -13.34738 -12.92951 -12.84014 -12.71681 -12.60104 -12.49102 -12.22658 -12.18340 -11.91222 -11.89439 -11.80461 -11.71943 -11.58452 -11.42252 -11.32527 -11.16601 -11.08978 -10.79921 -10.53904 -10.50617 -10.13512 -9.94864 -9.60377 -9.14652 -8.59075 -6.21351 -4.27694 -0.27040 0.46696 2.41650 2.61006 3.20293 3.27188 3.29321 3.30859 3.66229 3.87290 4.05484 4.12712 4.19387 4.29839 4.37020 4.50602 4.56185 4.68672 4.79858 4.96482 5.03337 5.12942 5.14333 5.24958 5.29907 5.35837 5.37710 5.45252 5.49052 5.51202 5.62385 5.66138 5.69675 5.73572 6.00776 6.21228 6.30977 7.17128 7.22541 7.71069 8.06327 8.75613 9.37921 10.89548 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013527 B = 0.003955 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.389581 B = 7077.315180 C = 7582.698224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.106 4.106 3 C -0.589 4.589 4 H 0.146 0.854 5 C 0.130 3.870 6 N -1.016 6.016 7 S 2.583 3.417 8 O -0.956 6.956 9 O -0.955 6.955 10 C -0.592 4.592 11 C 0.029 3.971 12 C -0.523 4.523 13 H 0.062 0.938 14 C 0.059 3.941 15 N -0.889 5.889 16 Si 0.900 3.100 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.129 3.871 21 C -0.592 4.592 22 H 0.145 0.855 23 C -0.140 4.140 24 S 2.419 3.581 25 O -0.935 6.935 26 O -0.933 6.933 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.266 0.734 39 H 0.123 0.877 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.451 -9.018 -16.040 19.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.145 4.145 3 C -0.700 4.700 4 H 0.164 0.836 5 C 0.003 3.997 6 N -0.849 5.849 7 S 2.683 3.317 8 O -0.946 6.946 9 O -0.946 6.946 10 C -0.726 4.726 11 C -0.010 4.010 12 C -0.562 4.562 13 H 0.080 0.920 14 C -0.144 4.144 15 N -0.527 5.527 16 Si 0.727 3.273 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.197 1.197 20 C 0.002 3.998 21 C -0.704 4.704 22 H 0.163 0.837 23 C -0.198 4.198 24 S 2.601 3.399 25 O -0.932 6.932 26 O -0.930 6.930 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.141 0.859 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.879 -9.341 -16.490 19.570 hybrid contribution -1.041 1.008 1.522 2.101 sum -5.920 -8.333 -14.968 18.125 Atomic orbital electron populations 1.22198 0.94356 1.03416 1.04109 1.21315 0.96812 0.91172 1.05183 1.30686 1.06257 1.10135 1.22948 0.83600 1.21321 0.88104 0.82737 1.07524 1.58102 1.76701 1.20595 1.29519 1.06078 0.77251 0.74686 0.73731 1.93547 1.63653 1.60410 1.76990 1.93549 1.76494 1.50469 1.74058 1.30554 1.16747 1.11941 1.13329 1.18974 0.97478 0.96382 0.88183 1.20972 0.93255 1.36542 1.05468 0.91997 1.25062 0.95817 0.95933 0.97542 1.69949 1.17947 1.42902 1.21910 0.86467 0.81722 0.78962 0.80136 1.20404 1.20939 1.19730 1.21240 0.91257 0.98660 0.88633 1.30511 1.09400 1.21773 1.08690 0.83667 1.21575 1.03838 1.01347 0.93082 1.08345 0.75955 0.77935 0.77670 1.93573 1.27645 1.85222 1.86743 1.93558 1.79016 1.71017 1.49385 0.91054 0.91183 0.91293 0.89981 0.88783 0.88378 0.85884 0.86003 0.86034 0.94767 0.94736 0.92426 0.85930 0.88417 0.90532 0.90613 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 9.56 37.16 0.36 -1.25 16 2 C -0.11 -0.87 5.41 -26.73 -0.14 -1.01 16 3 C -0.59 -5.40 2.67 -26.39 -0.07 -5.47 16 4 H 0.15 1.13 8.14 -51.93 -0.42 0.71 16 5 C 0.13 1.29 5.49 -3.76 -0.02 1.27 16 6 N -1.02 -11.87 3.03 -114.06 -0.35 -12.22 16 7 S 2.58 41.79 5.41 -107.50 -0.58 41.21 16 8 O -0.96 -17.87 16.50 -57.54 -0.95 -18.82 16 9 O -0.96 -17.83 16.49 -57.54 -0.95 -18.78 16 10 C -0.59 -10.22 6.12 37.16 0.23 -9.99 16 11 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 12 C -0.52 -13.81 9.11 -34.44 -0.31 -14.13 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 16 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 C 0.13 1.28 5.45 -4.01 -0.02 1.26 16 21 C -0.59 -5.36 3.21 -26.64 -0.09 -5.45 16 22 H 0.15 1.11 8.14 -51.93 -0.42 0.68 16 23 C -0.14 -1.08 9.21 37.16 0.34 -0.73 16 24 S 2.42 25.46 3.69 -107.50 -0.40 25.07 16 25 O -0.93 -12.06 15.83 -57.81 -0.92 -12.98 16 26 O -0.93 -11.58 18.01 -57.81 -1.04 -12.62 16 27 H 0.07 0.72 5.65 -51.92 -0.29 0.43 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.12 1.22 6.76 -51.93 -0.35 0.87 16 34 H 0.12 1.81 8.14 -51.92 -0.42 1.39 16 35 H 0.12 1.81 8.14 -51.92 -0.42 1.39 16 36 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.12 1.22 6.77 -51.93 -0.35 0.87 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 367.13 15.07 5.53 5.53 Total: -1.00 -36.16 367.13 -10.78 -46.93 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.88 Total: -0.55 kcal Atomic # 6 Polarization: -33.46 SS G_CDS: 0.03 Total: -33.43 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.39 Total: -37.15 kcal Atomic # 8 Polarization: -59.34 SS G_CDS: -3.85 Total: -63.20 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 67.26 SS G_CDS: -0.98 Total: 66.28 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.16 -10.78 -46.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344893752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.727 kcal (2) G-P(sol) polarization free energy of solvation -36.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds