Wall clock time and date at job start Wed Apr 1 2020 00:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46972 * 236.62923 * 3 2 1 5 5 C 1.36873 * 120.00147 * 275.13273 * 4 3 2 6 6 H 1.08007 * 120.00063 * 143.88207 * 5 4 3 7 7 C 1.39010 * 120.00312 * 323.88778 * 5 4 3 8 8 N 1.31400 * 119.99659 * 38.10580 * 7 5 4 9 9 Si 1.86800 * 120.00224 * 218.10689 * 7 5 4 10 10 H 1.48500 * 109.47009 * 59.99850 * 9 7 5 11 11 H 1.48500 * 109.47073 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47138 * 299.99866 * 9 7 5 13 13 C 1.34775 * 119.99764 * 95.13313 * 4 3 2 14 14 O 1.21739 * 119.99947 * 184.32993 * 13 4 3 15 15 C 1.46548 * 120.00115 * 4.33430 * 13 4 3 16 16 C 1.37996 * 126.23819 * 158.24074 * 15 13 4 17 17 C 1.39812 * 107.08135 * 180.02562 * 16 15 13 18 18 S 1.76204 * 126.05719 * 180.02562 * 17 16 15 19 19 O 1.42088 * 106.40352 * 336.46038 * 18 17 16 20 20 O 1.42100 * 106.39656 * 203.53520 * 18 17 16 21 21 N 1.65600 * 107.21667 * 90.00154 * 18 17 16 22 22 C 1.46502 * 120.00252 * 64.72184 * 21 18 17 23 23 C 1.52998 * 109.47148 * 95.27189 * 22 21 18 24 24 C 1.52997 * 109.47033 * 215.27573 * 22 21 18 25 25 C 1.35478 * 107.87817 * 0.26038 * 17 16 15 26 26 N 1.35593 * 108.88608 * 359.57416 * 25 17 16 27 27 H 0.96998 * 125.68618 * 180.16904 * 26 25 17 28 28 H 4.40638 * 5.51304 * 179.97438 * 4 1 2 29 29 H 1.09005 * 109.47002 * 116.63158 * 3 2 1 30 30 H 1.08997 * 109.47776 * 356.63038 * 3 2 1 31 31 H 0.96996 * 119.99434 * 179.97438 * 8 7 5 32 32 H 1.08001 * 126.46473 * 0.02562 * 16 15 13 33 33 H 0.97002 * 120.00087 * 244.99811 * 21 18 17 34 34 H 1.09007 * 109.46884 * 335.27571 * 22 21 18 35 35 H 1.09007 * 109.46916 * 60.00402 * 23 22 21 36 36 H 1.09003 * 109.46877 * 180.02562 * 23 22 21 37 37 H 1.08994 * 109.47504 * 300.00238 * 23 22 21 38 38 H 1.09005 * 109.47293 * 60.00204 * 24 22 21 39 39 H 1.09003 * 109.47137 * 179.97438 * 24 22 21 40 40 H 1.08993 * 109.47392 * 299.99615 * 24 22 21 41 41 H 1.08000 * 125.56080 * 179.71144 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.7606 1.1535 5 6 3.2614 2.1210 1.0725 6 1 3.0440 2.7360 1.9333 7 6 3.6708 2.7112 -0.1177 8 7 3.2504 2.2324 -1.2669 9 14 4.8184 4.1847 -0.0833 10 1 6.0893 3.8068 0.5854 11 1 5.1023 4.6234 -1.4733 12 1 4.1762 5.2948 0.6653 13 6 3.4573 0.1202 2.2944 14 8 3.7873 0.7576 3.2777 15 6 3.4117 -1.3434 2.3514 16 6 4.0853 -2.1463 3.2492 17 6 3.7566 -3.4703 2.9431 18 16 4.3426 -4.9048 3.7818 19 8 5.5656 -4.5348 4.4033 20 8 4.2334 -5.9809 2.8602 21 7 3.2749 -5.2274 5.0058 22 6 1.8943 -5.6049 4.6932 23 6 1.7719 -7.1299 4.6849 24 6 0.9545 -5.0235 5.7514 25 6 2.9118 -3.4549 1.8841 26 7 2.6895 -2.1682 1.5186 27 1 2.1199 -1.8775 0.7893 28 1 -1.0501 0.0000 -0.0004 29 1 3.0091 0.4615 -0.9187 30 1 3.0099 -1.0250 0.0604 31 1 3.5357 2.6445 -2.0973 32 1 4.7425 -1.8145 4.0393 33 1 3.5624 -5.1625 5.9300 34 1 1.6238 -5.2133 3.7125 35 1 2.0424 -7.5214 5.6656 36 1 0.7448 -7.4107 4.4518 37 1 2.4414 -7.5441 3.9311 38 1 1.0417 -3.9370 5.7572 39 1 -0.0727 -5.3040 5.5185 40 1 1.2249 -5.4150 6.7319 41 1 2.4833 -4.3254 1.4098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491021326.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:35 Heat of formation + Delta-G solvation = 20.222946 kcal Electronic energy + Delta-G solvation = -27473.962334 eV Core-core repulsion = 23484.849258 eV Total energy + Delta-G solvation = -3989.113076 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -41.24962 -38.26004 -37.26420 -36.69203 -35.66011 -35.52697 -32.89515 -31.67704 -31.06200 -30.65151 -29.20268 -27.36407 -26.90136 -25.10970 -22.04158 -21.93491 -21.56552 -19.93893 -19.25589 -18.35740 -17.85189 -17.43600 -16.70770 -16.24417 -16.12090 -15.36787 -15.02799 -14.73992 -14.57283 -14.42104 -14.22927 -13.84389 -13.62232 -13.33787 -12.97587 -12.92970 -12.66738 -12.43616 -12.41137 -12.15572 -11.93459 -11.85881 -11.84189 -11.66238 -11.61652 -11.31974 -11.10992 -11.00506 -10.79494 -10.46957 -10.03084 -9.75629 -9.64215 -9.23420 -8.94111 -8.82446 -8.22085 -8.09348 -6.75533 -4.12505 0.63808 1.82234 2.28434 3.04935 3.14124 3.16925 3.18176 3.29784 3.32671 3.42500 3.91661 3.94750 4.10019 4.45839 4.56150 4.58974 4.76391 4.87496 4.94611 4.97927 5.03810 5.21751 5.36183 5.39707 5.49959 5.60085 5.62876 5.68265 5.88042 5.98010 6.05604 6.09362 6.12647 6.45601 6.69205 6.82704 6.91491 6.95535 7.38531 7.43789 7.94212 8.15153 8.23191 8.84749 9.03185 9.63652 10.23167 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018471 B = 0.003216 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.517337 B = 8704.550922 C = 9267.558076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.165 4.165 3 C 0.144 3.856 4 N -0.429 5.429 5 C -0.330 4.330 6 H 0.104 0.896 7 C 0.062 3.938 8 N -0.842 5.842 9 Si 0.912 3.088 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.519 3.481 14 O -0.558 6.558 15 C -0.010 4.010 16 C -0.054 4.054 17 C -0.751 4.751 18 S 2.724 3.276 19 O -0.964 6.964 20 O -0.968 6.968 21 N -1.115 6.115 22 C 0.148 3.852 23 C -0.173 4.173 24 C -0.160 4.160 25 C 0.109 3.891 26 N -0.529 5.529 27 H 0.428 0.572 28 H 0.210 0.790 29 H 0.175 0.825 30 H 0.068 0.932 31 H 0.277 0.723 32 H 0.157 0.843 33 H 0.416 0.584 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.967 -15.425 4.959 17.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.167 4.167 3 C 0.022 3.978 4 N -0.147 5.147 5 C -0.456 4.456 6 H 0.122 0.878 7 C -0.145 4.145 8 N -0.478 5.478 9 Si 0.737 3.263 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.194 1.194 13 C 0.307 3.693 14 O -0.440 6.440 15 C -0.123 4.123 16 C -0.079 4.079 17 C -0.847 4.847 18 S 2.814 3.186 19 O -0.954 6.954 20 O -0.958 6.958 21 N -0.874 5.874 22 C 0.041 3.959 23 C -0.232 4.232 24 C -0.219 4.219 25 C -0.035 4.035 26 N -0.131 5.131 27 H 0.275 0.725 28 H 0.227 0.773 29 H 0.191 0.809 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.175 0.825 33 H 0.250 0.750 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.202 -15.360 4.691 16.882 hybrid contribution -0.613 1.424 -0.350 1.590 sum -5.814 -13.936 4.341 15.712 Atomic orbital electron populations 1.24709 0.95688 1.02450 1.02555 1.24013 0.95057 0.98845 0.98741 1.20510 0.83352 0.96205 0.97760 1.43496 1.54302 1.07072 1.09870 1.19292 1.45871 0.80682 0.99798 0.87838 1.25502 0.95224 0.99766 0.94036 1.69528 1.37060 1.42311 0.98887 0.86250 0.81972 0.80768 0.77353 1.19243 1.20921 1.19421 1.16855 0.83984 0.83571 0.84873 1.90706 1.52884 1.65827 1.34587 1.21324 1.02221 0.92102 0.96633 1.20719 0.99566 0.88690 0.98965 1.30738 1.20885 1.17176 1.15852 1.00767 0.72206 0.73010 0.72630 1.93569 1.41285 1.84448 1.76141 1.93547 1.86469 1.52257 1.63570 1.55719 1.23648 1.85565 1.22469 1.20681 0.80724 0.95082 0.99379 1.22349 1.02528 0.95251 1.03031 1.22107 0.99105 1.01942 0.98755 1.21783 0.97981 0.87821 0.95914 1.43738 1.36045 1.06293 1.27037 0.72480 0.77302 0.80880 0.91495 0.91164 0.82499 0.74985 0.89881 0.92186 0.91665 0.91013 0.91586 0.91387 0.91993 0.80134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.07 19.25 29.55 0.57 -3.50 16 2 C -0.17 -3.27 12.16 -37.12 -0.45 -3.72 16 3 C 0.14 3.04 5.06 -6.83 -0.03 3.01 16 4 N -0.43 -10.54 2.58 -119.47 -0.31 -10.85 16 5 C -0.33 -8.79 8.84 -15.02 -0.13 -8.92 16 6 H 0.10 2.91 7.83 -52.48 -0.41 2.50 16 7 C 0.06 1.53 5.35 -17.45 -0.09 1.44 16 8 N -0.84 -20.37 10.41 55.50 0.58 -19.79 16 9 Si 0.91 19.69 29.68 -169.99 -5.05 14.64 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 12 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 13 C 0.52 12.67 7.56 -12.91 -0.10 12.58 16 14 O -0.56 -15.32 16.79 5.15 0.09 -15.24 16 15 C -0.01 -0.19 6.51 -81.98 -0.53 -0.73 16 16 C -0.05 -0.99 10.52 -39.08 -0.41 -1.40 16 17 C -0.75 -11.25 5.99 -39.98 -0.24 -11.49 16 18 S 2.72 36.13 5.79 -107.50 -0.62 35.51 16 19 O -0.96 -15.94 17.87 -57.17 -1.02 -16.96 16 20 O -0.97 -14.15 17.14 -57.17 -0.98 -15.13 16 21 N -1.12 -10.82 5.47 -4.89 -0.03 -10.84 16 22 C 0.15 1.25 3.39 -67.93 -0.23 1.02 16 23 C -0.17 -1.32 9.52 37.16 0.35 -0.97 16 24 C -0.16 -1.16 9.44 37.16 0.35 -0.81 16 25 C 0.11 1.48 11.39 -16.87 -0.19 1.28 16 26 N -0.53 -8.53 4.85 -9.37 -0.05 -8.57 16 27 H 0.43 6.50 4.56 -40.82 -0.19 6.31 16 28 H 0.21 2.71 7.80 -54.08 -0.42 2.29 16 29 H 0.18 3.96 4.75 -51.93 -0.25 3.71 16 30 H 0.07 1.23 4.39 -51.93 -0.23 1.00 16 31 H 0.28 6.28 8.31 -40.82 -0.34 5.94 16 32 H 0.16 2.85 8.06 -52.49 -0.42 2.42 16 33 H 0.42 3.29 8.84 -34.47 -0.30 2.98 16 34 H 0.08 0.67 7.59 -51.93 -0.39 0.28 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.65 7.67 -51.93 -0.40 0.25 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 365.43 15.07 5.51 5.51 Total: -1.00 -33.66 365.43 -7.71 -41.37 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -4.68 Total: 12.55 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -1.14 Total: -12.20 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.20 Total: -50.06 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -1.92 Total: -47.32 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.05 Total: 14.64 kcal Atomic # 16 Polarization: 36.13 SS G_CDS: -0.62 Total: 35.51 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.66 -7.71 -41.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491021326.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.590 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds