Wall clock time and date at job start Wed Apr 1 2020 00:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46972 * 236.62923 * 3 2 1 5 5 C 1.36873 * 120.00147 * 275.13273 * 4 3 2 6 6 H 1.08007 * 120.00063 * 143.88207 * 5 4 3 7 7 C 1.39010 * 120.00312 * 323.88778 * 5 4 3 8 8 N 1.31400 * 119.99659 * 38.10580 * 7 5 4 9 9 Si 1.86800 * 120.00224 * 218.10689 * 7 5 4 10 10 H 1.48500 * 109.47009 * 59.99850 * 9 7 5 11 11 H 1.48500 * 109.47073 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47138 * 299.99866 * 9 7 5 13 13 C 1.34775 * 119.99764 * 95.13313 * 4 3 2 14 14 O 1.21739 * 119.99947 * 184.32993 * 13 4 3 15 15 C 1.46548 * 120.00115 * 4.33430 * 13 4 3 16 16 C 1.37996 * 126.23819 * 158.24074 * 15 13 4 17 17 C 1.39812 * 107.08135 * 180.02562 * 16 15 13 18 18 S 1.76204 * 126.05719 * 180.02562 * 17 16 15 19 19 O 1.42088 * 106.40352 * 336.46038 * 18 17 16 20 20 O 1.42100 * 106.39656 * 203.53520 * 18 17 16 21 21 N 1.65600 * 107.21667 * 90.00154 * 18 17 16 22 22 C 1.46502 * 120.00252 * 64.72184 * 21 18 17 23 23 C 1.52998 * 109.47148 * 95.27189 * 22 21 18 24 24 C 1.52997 * 109.47033 * 215.27573 * 22 21 18 25 25 C 1.35478 * 107.87817 * 0.26038 * 17 16 15 26 26 N 1.35593 * 108.88608 * 359.57416 * 25 17 16 27 27 H 0.96998 * 125.68618 * 180.16904 * 26 25 17 28 28 H 4.40638 * 5.51304 * 179.97438 * 4 1 2 29 29 H 1.09005 * 109.47002 * 116.63158 * 3 2 1 30 30 H 1.08997 * 109.47776 * 356.63038 * 3 2 1 31 31 H 0.96996 * 119.99434 * 179.97438 * 8 7 5 32 32 H 1.08001 * 126.46473 * 0.02562 * 16 15 13 33 33 H 0.97002 * 120.00087 * 244.99811 * 21 18 17 34 34 H 1.09007 * 109.46884 * 335.27571 * 22 21 18 35 35 H 1.09007 * 109.46916 * 60.00402 * 23 22 21 36 36 H 1.09003 * 109.46877 * 180.02562 * 23 22 21 37 37 H 1.08994 * 109.47504 * 300.00238 * 23 22 21 38 38 H 1.09005 * 109.47293 * 60.00204 * 24 22 21 39 39 H 1.09003 * 109.47137 * 179.97438 * 24 22 21 40 40 H 1.08993 * 109.47392 * 299.99615 * 24 22 21 41 41 H 1.08000 * 125.56080 * 179.71144 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.7606 1.1535 5 6 3.2614 2.1210 1.0725 6 1 3.0440 2.7360 1.9333 7 6 3.6708 2.7112 -0.1177 8 7 3.2504 2.2324 -1.2669 9 14 4.8184 4.1847 -0.0833 10 1 6.0893 3.8068 0.5854 11 1 5.1023 4.6234 -1.4733 12 1 4.1762 5.2948 0.6653 13 6 3.4573 0.1202 2.2944 14 8 3.7873 0.7576 3.2777 15 6 3.4117 -1.3434 2.3514 16 6 4.0853 -2.1463 3.2492 17 6 3.7566 -3.4703 2.9431 18 16 4.3426 -4.9048 3.7818 19 8 5.5656 -4.5348 4.4033 20 8 4.2334 -5.9809 2.8602 21 7 3.2749 -5.2274 5.0058 22 6 1.8943 -5.6049 4.6932 23 6 1.7719 -7.1299 4.6849 24 6 0.9545 -5.0235 5.7514 25 6 2.9118 -3.4549 1.8841 26 7 2.6895 -2.1682 1.5186 27 1 2.1199 -1.8775 0.7893 28 1 -1.0501 0.0000 -0.0004 29 1 3.0091 0.4615 -0.9187 30 1 3.0099 -1.0250 0.0604 31 1 3.5357 2.6445 -2.0973 32 1 4.7425 -1.8145 4.0393 33 1 3.5624 -5.1625 5.9300 34 1 1.6238 -5.2133 3.7125 35 1 2.0424 -7.5214 5.6656 36 1 0.7448 -7.4107 4.4518 37 1 2.4414 -7.5441 3.9311 38 1 1.0417 -3.9370 5.7572 39 1 -0.0727 -5.3040 5.5185 40 1 1.2249 -5.4150 6.7319 41 1 2.4833 -4.3254 1.4098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491021326.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:34 Heat of formation + Delta-G solvation = -4.780591 kcal Electronic energy + Delta-G solvation = -27475.046569 eV Core-core repulsion = 23484.849258 eV Total energy + Delta-G solvation = -3990.197311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.64016 -40.01268 -38.28498 -37.54083 -37.34697 -36.82443 -34.62017 -33.33371 -32.44987 -31.38681 -30.65958 -28.56156 -27.91725 -26.88535 -23.61086 -23.15192 -22.29741 -21.36726 -20.29589 -19.98301 -19.43465 -18.50320 -18.28930 -17.65059 -17.07798 -16.86757 -16.62989 -16.18068 -16.07054 -15.67680 -15.30050 -15.11370 -14.83514 -14.67545 -14.37483 -14.21565 -13.86930 -13.72986 -13.70327 -13.59108 -13.12629 -13.10807 -13.03644 -12.94258 -12.60652 -12.43909 -12.37439 -12.17788 -12.13316 -11.73109 -11.56708 -11.20308 -10.83541 -10.69919 -10.60687 -10.42867 -10.07133 -9.54549 -8.63653 -6.09161 -0.42868 0.45152 0.94220 1.30542 1.40489 1.48289 1.70626 1.84503 2.00870 2.14687 2.29600 2.32664 2.67502 2.88327 3.08343 3.41556 3.54869 3.81212 3.93735 3.97104 4.16467 4.20307 4.27434 4.35783 4.55506 4.57465 4.75003 4.89975 5.01258 5.02165 5.07593 5.11999 5.32813 5.34482 5.46375 5.47515 5.52758 5.54262 6.00927 6.17951 6.21813 6.36801 6.70877 6.93978 7.15943 7.77336 8.33465 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018471 B = 0.003216 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.517337 B = 8704.550922 C = 9267.558076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.222 4.222 3 C 0.149 3.851 4 N -0.437 5.437 5 C -0.375 4.375 6 H 0.071 0.929 7 C 0.040 3.960 8 N -0.843 5.843 9 Si 0.967 3.033 10 H -0.281 1.281 11 H -0.262 1.262 12 H -0.269 1.269 13 C 0.506 3.494 14 O -0.610 6.610 15 C -0.046 4.046 16 C -0.053 4.053 17 C -0.760 4.760 18 S 2.750 3.250 19 O -0.999 6.999 20 O -0.976 6.976 21 N -1.104 6.104 22 C 0.138 3.862 23 C -0.172 4.172 24 C -0.158 4.158 25 C 0.143 3.857 26 N -0.525 5.525 27 H 0.433 0.567 28 H 0.253 0.747 29 H 0.157 0.843 30 H 0.090 0.910 31 H 0.286 0.714 32 H 0.147 0.853 33 H 0.425 0.575 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.795 -17.668 3.949 19.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.223 4.223 3 C 0.027 3.973 4 N -0.154 5.154 5 C -0.501 4.501 6 H 0.089 0.911 7 C -0.168 4.168 8 N -0.478 5.478 9 Si 0.790 3.210 10 H -0.206 1.206 11 H -0.186 1.186 12 H -0.194 1.194 13 C 0.296 3.704 14 O -0.496 6.496 15 C -0.159 4.159 16 C -0.079 4.079 17 C -0.853 4.853 18 S 2.838 3.162 19 O -0.990 6.990 20 O -0.966 6.966 21 N -0.866 5.866 22 C 0.031 3.969 23 C -0.231 4.231 24 C -0.217 4.217 25 C -0.001 4.001 26 N -0.127 5.127 27 H 0.281 0.719 28 H 0.270 0.730 29 H 0.173 0.827 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.164 0.836 33 H 0.262 0.738 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -7.057 -17.597 3.621 19.302 hybrid contribution -0.158 1.987 -0.027 1.993 sum -7.215 -15.610 3.594 17.568 Atomic orbital electron populations 1.25678 0.96501 0.99497 0.99480 1.23940 0.95351 1.01542 1.01488 1.20289 0.84839 0.96714 0.95450 1.43605 1.54300 1.06731 1.10803 1.19108 1.49556 0.81910 0.99509 0.91125 1.26039 0.95219 1.02028 0.93493 1.69590 1.36266 1.42790 0.99111 0.85440 0.79309 0.78152 0.78130 1.20649 1.18578 1.19428 1.17467 0.83132 0.85474 0.84289 1.90636 1.55174 1.67588 1.36218 1.20668 1.05506 0.90290 0.99402 1.20796 0.98792 0.90249 0.98110 1.30996 1.21303 1.16220 1.16825 0.99994 0.71682 0.72081 0.72484 1.93522 1.43829 1.84813 1.76800 1.93534 1.86674 1.51988 1.64374 1.55464 1.24049 1.84944 1.22173 1.20976 0.79717 0.95946 1.00217 1.22345 1.03418 0.94271 1.03036 1.22102 0.99734 1.00938 0.98948 1.22658 0.95403 0.87904 0.94118 1.43580 1.35852 1.06607 1.26704 0.71895 0.73044 0.82720 0.89256 0.90279 0.83571 0.73837 0.89222 0.91515 0.89753 0.92433 0.93006 0.89749 0.91068 0.75002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.18 19.25 74.32 1.43 -4.75 16 2 C -0.22 -8.62 12.16 31.13 0.38 -8.24 16 3 C 0.15 6.38 5.06 84.57 0.43 6.81 16 4 N -0.44 -22.50 2.58 -650.09 -1.68 -24.17 16 5 C -0.37 -21.01 8.84 84.09 0.74 -20.27 16 6 H 0.07 4.30 7.83 -2.91 -0.02 4.28 16 7 C 0.04 2.01 5.35 84.94 0.45 2.46 16 8 N -0.84 -40.96 10.41 21.68 0.23 -40.73 16 9 Si 0.97 41.15 29.68 68.60 2.04 43.19 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 13 C 0.51 26.15 7.56 86.41 0.65 26.80 16 14 O -0.61 -36.04 16.79 -4.47 -0.08 -36.12 16 15 C -0.05 -1.90 6.51 40.34 0.26 -1.64 16 16 C -0.05 -1.99 10.52 22.59 0.24 -1.75 16 17 C -0.76 -21.67 5.99 22.01 0.13 -21.54 16 18 S 2.75 68.63 5.79 -56.49 -0.33 68.31 16 19 O -1.00 -32.68 17.87 -128.00 -2.29 -34.97 16 20 O -0.98 -26.02 17.14 -128.00 -2.19 -28.22 16 21 N -1.10 -19.25 5.47 -169.38 -0.93 -20.18 16 22 C 0.14 1.92 3.39 44.99 0.15 2.08 16 23 C -0.17 -2.09 9.52 71.98 0.69 -1.40 16 24 C -0.16 -1.87 9.44 71.98 0.68 -1.19 16 25 C 0.14 3.46 11.39 83.47 0.95 4.41 16 26 N -0.53 -16.24 4.85 -183.57 -0.89 -17.13 16 27 H 0.43 12.50 4.56 -92.71 -0.42 12.08 16 28 H 0.25 5.37 7.80 -4.41 -0.03 5.34 16 29 H 0.16 7.21 4.75 -2.39 -0.01 7.20 16 30 H 0.09 3.29 4.39 -2.39 -0.01 3.27 16 31 H 0.29 12.74 8.31 -92.71 -0.77 11.97 16 32 H 0.15 5.63 8.06 -2.91 -0.02 5.60 16 33 H 0.43 6.02 8.84 -96.74 -0.85 5.17 16 34 H 0.09 1.13 7.59 -2.38 -0.02 1.11 16 35 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 0.89 7.67 -2.39 -0.02 0.87 16 38 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.23 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -77.52 365.43 0.89 -76.64 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: -0.19 Total: 31.62 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 7.19 Total: -18.22 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -3.27 Total: -102.22 kcal Atomic # 8 Polarization: -94.75 SS G_CDS: -4.56 Total: -99.30 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.04 Total: 43.19 kcal Atomic # 16 Polarization: 68.63 SS G_CDS: -0.33 Total: 68.31 kcal Total: -77.52 0.89 -76.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491021326.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.856 kcal (2) G-P(sol) polarization free energy of solvation -77.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds