Wall clock time and date at job start Tue Mar 31 2020 22:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38803 * 120.86966 * 2 1 4 4 N 1.32167 * 119.14853 * 179.72347 * 3 2 1 5 5 C 1.31909 * 121.03437 * 0.25082 * 4 3 2 6 6 S 1.76208 * 119.04166 * 179.97438 * 5 4 3 7 7 C 1.81405 * 104.44464 * 90.00263 * 6 5 4 8 8 O 1.42102 * 104.27978 * 206.07062 * 6 5 4 9 9 O 1.42100 * 104.27732 * 333.93216 * 6 5 4 10 10 N 1.31550 * 121.92095 * 0.02562 * 5 4 3 11 11 C 1.33104 * 120.73468 * 359.97438 * 10 5 4 12 12 C 1.48448 * 120.55281 * 180.02562 * 11 10 5 13 13 O 1.21477 * 120.00211 * 183.67050 * 12 11 10 14 14 N 1.34784 * 120.00044 * 3.67125 * 12 11 10 15 15 C 1.46493 * 120.00283 * 184.60066 * 14 12 11 16 16 C 1.53001 * 109.47227 * 185.19881 * 15 14 12 17 17 C 1.50699 * 115.54807 * 58.03066 * 16 15 14 18 18 H 1.08007 * 119.99790 * 264.33037 * 17 16 15 19 19 C 1.37876 * 120.00431 * 84.32919 * 17 16 15 20 20 N 1.31523 * 119.99918 * 1.85378 * 19 17 16 21 21 Si 1.86801 * 120.00461 * 181.84999 * 19 17 16 22 22 H 1.48500 * 109.46999 * 89.99891 * 21 19 17 23 23 H 1.48500 * 109.47402 * 210.00179 * 21 19 17 24 24 H 1.48499 * 109.46681 * 330.00386 * 21 19 17 25 25 C 1.52996 * 117.49890 * 272.35739 * 16 15 14 26 26 C 1.52996 * 117.50028 * 203.69848 * 16 15 14 27 27 H 1.09001 * 109.46970 * 96.69858 * 1 2 3 28 28 H 1.09004 * 109.46864 * 216.69892 * 1 2 3 29 29 H 1.08999 * 109.47051 * 336.69630 * 1 2 3 30 30 H 1.08005 * 120.42526 * 359.97438 * 3 2 1 31 31 H 1.08998 * 109.47085 * 60.00557 * 7 6 5 32 32 H 1.09000 * 109.46992 * 180.02562 * 7 6 5 33 33 H 1.08995 * 109.47268 * 299.99655 * 7 6 5 34 34 H 0.96996 * 119.99531 * 4.59237 * 14 12 11 35 35 H 1.09005 * 109.46943 * 305.19410 * 15 14 12 36 36 H 1.08997 * 109.47501 * 65.19627 * 15 14 12 37 37 H 0.96999 * 120.00121 * 185.01822 * 20 19 17 38 38 H 1.09000 * 117.49931 * 359.97438 * 25 16 15 39 39 H 1.09003 * 117.49754 * 145.01959 * 25 16 15 40 40 H 1.08998 * 117.50273 * 214.98321 * 26 16 15 41 41 H 1.08999 * 117.50047 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2192 1.1914 0.0000 4 7 3.5403 1.1517 0.0056 5 6 4.1861 0.0015 0.0061 6 16 5.9481 0.0099 0.0130 7 6 6.3938 0.0090 1.7715 8 8 6.3069 -1.2244 -0.5929 9 8 6.2950 1.2496 -0.5887 10 7 3.5530 -1.1516 0.0008 11 6 2.2228 -1.1974 -0.0050 12 6 1.5126 -2.5009 -0.0105 13 8 0.3004 -2.5319 -0.0831 14 7 2.2127 -3.6502 0.0650 15 6 1.5216 -4.9374 -0.0418 16 6 2.5172 -6.0728 0.2041 17 6 3.2270 -6.0384 1.5330 18 1 4.2061 -5.5892 1.6108 19 6 2.6265 -6.5803 2.6497 20 7 1.4502 -7.1597 2.5479 21 14 3.4837 -6.4916 4.3070 22 1 3.0850 -5.2426 5.0043 23 1 3.0929 -7.6644 5.1299 24 1 4.9548 -6.4973 4.1043 25 6 3.2986 -6.6005 -1.0007 26 6 2.1821 -7.4456 -0.3824 27 1 -0.3633 -0.1199 -1.0207 28 1 -0.3633 -0.8240 0.6142 29 1 -0.3633 0.9438 0.4065 30 1 1.7005 2.1387 -0.0004 31 1 5.9893 -0.8838 2.2483 32 1 7.4792 0.0144 1.8712 33 1 5.9808 0.8962 2.2514 34 1 3.1743 -3.6249 0.1900 35 1 0.7254 -4.9850 0.7013 36 1 1.0941 -5.0387 -1.0393 37 1 0.9949 -7.4760 3.3439 38 1 3.1031 -6.1391 -1.9687 39 1 4.3260 -6.9232 -0.8322 40 1 2.4754 -8.3239 0.1927 41 1 1.2522 -7.5400 -0.9431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597612247.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:10 Heat of formation + Delta-G solvation = -23.938060 kcal Electronic energy + Delta-G solvation = -27435.873060 eV Core-core repulsion = 23444.845019 eV Total energy + Delta-G solvation = -3991.028041 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.57034 -39.08767 -37.30890 -36.80087 -36.17323 -34.53416 -33.94585 -33.25721 -32.00607 -29.85361 -28.51079 -26.91647 -25.66997 -24.83429 -23.53100 -21.35063 -20.94020 -19.70679 -19.22754 -18.48024 -18.26020 -16.77370 -16.63559 -16.05889 -15.75464 -15.62292 -15.09407 -14.96210 -14.75884 -14.55953 -14.39796 -13.88722 -13.58817 -13.45191 -13.30832 -13.08206 -12.77497 -12.54525 -12.31748 -12.27773 -12.14814 -12.01561 -11.63705 -11.32953 -11.14128 -11.03937 -11.03313 -10.95774 -10.56971 -10.32030 -10.22847 -9.88021 -9.64524 -9.34872 -9.09106 -8.54129 -8.43444 -8.13197 -6.12410 -4.21032 -0.35024 0.05254 0.41570 2.36139 2.64207 3.09724 3.21295 3.29800 3.31717 3.38133 3.47814 3.70068 4.13181 4.18331 4.31255 4.35935 4.41949 4.50177 4.61367 4.83208 5.15841 5.23846 5.36770 5.38449 5.49694 5.58816 5.69568 5.97008 6.16364 6.27225 6.31310 6.40265 6.46100 6.68623 6.75966 7.06044 7.07506 7.23526 7.33251 7.48150 7.77895 8.04794 8.29341 8.53371 8.81218 9.46316 10.95774 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010570 B = 0.004097 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.245654 B = 6833.410302 C = 7873.271971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.080 4.080 3 C 0.125 3.875 4 N -0.428 5.428 5 C -0.235 4.235 6 S 2.521 3.479 7 C -0.642 4.642 8 O -0.900 6.900 9 O -0.911 6.911 10 N -0.404 5.404 11 C 0.117 3.883 12 C 0.556 3.444 13 O -0.534 6.534 14 N -0.668 5.668 15 C 0.159 3.841 16 C 0.021 3.979 17 C -0.497 4.497 18 H 0.062 0.938 19 C 0.074 3.926 20 N -0.875 5.875 21 Si 0.888 3.112 22 H -0.282 1.282 23 H -0.286 1.286 24 H -0.272 1.272 25 C -0.209 4.209 26 C -0.142 4.142 27 H 0.090 0.910 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.186 0.814 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.134 0.866 34 H 0.414 0.586 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.261 0.739 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.412 16.356 -1.935 16.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.085 4.085 3 C -0.045 4.045 4 N -0.141 5.141 5 C -0.582 4.582 6 S 2.691 3.309 7 C -0.794 4.794 8 O -0.896 6.896 9 O -0.907 6.907 10 N -0.120 5.120 11 C -0.033 4.033 12 C 0.338 3.662 13 O -0.412 6.412 14 N -0.315 5.315 15 C 0.037 3.963 16 C 0.020 3.980 17 C -0.535 4.535 18 H 0.080 0.920 19 C -0.130 4.130 20 N -0.511 5.511 21 Si 0.715 3.285 22 H -0.208 1.208 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.246 4.246 26 C -0.180 4.180 27 H 0.108 0.892 28 H 0.128 0.872 29 H 0.088 0.912 30 H 0.203 0.797 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.153 0.847 34 H 0.251 0.749 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.909 16.058 -2.630 16.735 hybrid contribution -0.809 0.067 1.649 1.838 sum 3.100 16.125 -0.981 16.450 Atomic orbital electron populations 1.21135 0.87226 1.04461 1.04916 1.22156 1.00490 0.93584 0.92257 1.23532 0.89502 0.98510 0.92947 1.68356 1.10574 1.28038 1.07146 1.36605 1.25989 0.88257 1.07318 1.05545 0.71851 0.75044 0.78508 1.30141 1.12807 1.12726 1.23710 1.93671 1.78997 1.44067 1.72906 1.93620 1.79576 1.44206 1.73336 1.68430 1.09608 1.28218 1.05762 1.22100 0.89567 0.95667 0.95986 1.17595 0.86571 0.82699 0.79314 1.90713 1.12449 1.86315 1.51761 1.45926 1.12743 1.05221 1.67645 1.21151 0.95612 0.80524 0.99047 1.19029 0.95922 0.90820 0.92224 1.20381 1.03211 1.38751 0.91161 0.91978 1.24977 0.95188 0.93976 0.98875 1.69990 1.14219 1.37977 1.28927 0.86662 0.80157 0.77579 0.84087 1.20778 1.21154 1.19653 1.23060 0.97010 1.07612 0.96964 1.22473 0.96473 0.96714 1.02351 0.89189 0.87176 0.91167 0.79718 0.84188 0.84060 0.84719 0.74899 0.90383 0.93964 0.92890 0.91570 0.90128 0.89529 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 8.85 36.01 0.32 -0.96 16 2 C -0.08 -1.00 5.95 -103.94 -0.62 -1.62 16 3 C 0.12 1.34 11.00 -17.20 -0.19 1.15 16 4 N -0.43 -5.42 10.07 -13.78 -0.14 -5.56 16 5 C -0.23 -3.21 7.37 -92.26 -0.68 -3.89 16 6 S 2.52 28.63 5.92 -107.50 -0.64 27.99 16 7 C -0.64 -4.37 10.80 101.05 1.09 -3.28 16 8 O -0.90 -13.31 17.71 -57.54 -1.02 -14.33 16 9 O -0.91 -12.16 17.71 -57.54 -1.02 -13.18 16 10 N -0.40 -6.35 9.36 -10.33 -0.10 -6.45 16 11 C 0.12 1.85 6.79 -82.64 -0.56 1.29 16 12 C 0.56 10.27 7.79 -12.05 -0.09 10.18 16 13 O -0.53 -10.45 13.45 5.39 0.07 -10.37 16 14 N -0.67 -13.25 5.36 -61.06 -0.33 -13.58 16 15 C 0.16 3.48 5.56 -4.05 -0.02 3.46 16 16 C 0.02 0.48 1.50 -155.66 -0.23 0.25 16 17 C -0.50 -12.63 8.39 -34.44 -0.29 -12.92 16 18 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 19 C 0.07 1.92 5.43 -17.82 -0.10 1.82 16 20 N -0.88 -23.72 12.74 55.43 0.71 -23.01 16 21 Si 0.89 20.22 29.54 -169.99 -5.02 15.20 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 25 C -0.21 -4.37 9.94 -26.70 -0.27 -4.64 16 26 C -0.14 -3.19 9.28 -26.70 -0.25 -3.44 16 27 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.11 1.46 5.93 -51.93 -0.31 1.15 16 29 H 0.07 0.50 8.06 -51.93 -0.42 0.09 16 30 H 0.19 1.16 8.06 -52.48 -0.42 0.73 16 31 H 0.14 0.94 8.14 -51.92 -0.42 0.52 16 32 H 0.14 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.13 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.41 8.11 7.66 -40.82 -0.31 7.80 16 35 H 0.08 1.91 8.10 -51.93 -0.42 1.49 16 36 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 37 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 40 H 0.09 2.09 8.14 -51.93 -0.42 1.66 16 41 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 369.00 15.07 5.56 5.56 Total: -1.00 -33.60 369.00 -9.04 -42.64 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -5.23 Total: 7.70 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -1.89 Total: -12.60 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.14 Total: -48.61 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -1.97 Total: -37.88 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 28.63 SS G_CDS: -0.64 Total: 27.99 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.60 -9.04 -42.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597612247.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.698 kcal (2) G-P(sol) polarization free energy of solvation -33.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds