Wall clock time and date at job start Tue Mar 31 2020 22:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38803 * 120.86966 * 2 1 4 4 N 1.32167 * 119.14853 * 179.72347 * 3 2 1 5 5 C 1.31909 * 121.03437 * 0.25082 * 4 3 2 6 6 S 1.76208 * 119.04166 * 179.97438 * 5 4 3 7 7 C 1.81405 * 104.44464 * 90.00263 * 6 5 4 8 8 O 1.42102 * 104.27978 * 206.07062 * 6 5 4 9 9 O 1.42100 * 104.27732 * 333.93216 * 6 5 4 10 10 N 1.31550 * 121.92095 * 0.02562 * 5 4 3 11 11 C 1.33104 * 120.73468 * 359.97438 * 10 5 4 12 12 C 1.48448 * 120.55281 * 180.02562 * 11 10 5 13 13 O 1.21477 * 120.00211 * 183.67050 * 12 11 10 14 14 N 1.34784 * 120.00044 * 3.67125 * 12 11 10 15 15 C 1.46493 * 120.00283 * 184.60066 * 14 12 11 16 16 C 1.53001 * 109.47227 * 185.19881 * 15 14 12 17 17 C 1.50699 * 115.54807 * 58.03066 * 16 15 14 18 18 H 1.08007 * 119.99790 * 264.33037 * 17 16 15 19 19 C 1.37876 * 120.00431 * 84.32919 * 17 16 15 20 20 N 1.31523 * 119.99918 * 1.85378 * 19 17 16 21 21 Si 1.86801 * 120.00461 * 181.84999 * 19 17 16 22 22 H 1.48500 * 109.46999 * 89.99891 * 21 19 17 23 23 H 1.48500 * 109.47402 * 210.00179 * 21 19 17 24 24 H 1.48499 * 109.46681 * 330.00386 * 21 19 17 25 25 C 1.52996 * 117.49890 * 272.35739 * 16 15 14 26 26 C 1.52996 * 117.50028 * 203.69848 * 16 15 14 27 27 H 1.09001 * 109.46970 * 96.69858 * 1 2 3 28 28 H 1.09004 * 109.46864 * 216.69892 * 1 2 3 29 29 H 1.08999 * 109.47051 * 336.69630 * 1 2 3 30 30 H 1.08005 * 120.42526 * 359.97438 * 3 2 1 31 31 H 1.08998 * 109.47085 * 60.00557 * 7 6 5 32 32 H 1.09000 * 109.46992 * 180.02562 * 7 6 5 33 33 H 1.08995 * 109.47268 * 299.99655 * 7 6 5 34 34 H 0.96996 * 119.99531 * 4.59237 * 14 12 11 35 35 H 1.09005 * 109.46943 * 305.19410 * 15 14 12 36 36 H 1.08997 * 109.47501 * 65.19627 * 15 14 12 37 37 H 0.96999 * 120.00121 * 185.01822 * 20 19 17 38 38 H 1.09000 * 117.49931 * 359.97438 * 25 16 15 39 39 H 1.09003 * 117.49754 * 145.01959 * 25 16 15 40 40 H 1.08998 * 117.50273 * 214.98321 * 26 16 15 41 41 H 1.08999 * 117.50047 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2192 1.1914 0.0000 4 7 3.5403 1.1517 0.0056 5 6 4.1861 0.0015 0.0061 6 16 5.9481 0.0099 0.0130 7 6 6.3938 0.0090 1.7715 8 8 6.3069 -1.2244 -0.5929 9 8 6.2950 1.2496 -0.5887 10 7 3.5530 -1.1516 0.0008 11 6 2.2228 -1.1974 -0.0050 12 6 1.5126 -2.5009 -0.0105 13 8 0.3004 -2.5319 -0.0831 14 7 2.2127 -3.6502 0.0650 15 6 1.5216 -4.9374 -0.0418 16 6 2.5172 -6.0728 0.2041 17 6 3.2270 -6.0384 1.5330 18 1 4.2061 -5.5892 1.6108 19 6 2.6265 -6.5803 2.6497 20 7 1.4502 -7.1597 2.5479 21 14 3.4837 -6.4916 4.3070 22 1 3.0850 -5.2426 5.0043 23 1 3.0929 -7.6644 5.1299 24 1 4.9548 -6.4973 4.1043 25 6 3.2986 -6.6005 -1.0007 26 6 2.1821 -7.4456 -0.3824 27 1 -0.3633 -0.1199 -1.0207 28 1 -0.3633 -0.8240 0.6142 29 1 -0.3633 0.9438 0.4065 30 1 1.7005 2.1387 -0.0004 31 1 5.9893 -0.8838 2.2483 32 1 7.4792 0.0144 1.8712 33 1 5.9808 0.8962 2.2514 34 1 3.1743 -3.6249 0.1900 35 1 0.7254 -4.9850 0.7013 36 1 1.0941 -5.0387 -1.0393 37 1 0.9949 -7.4760 3.3439 38 1 3.1031 -6.1391 -1.9687 39 1 4.3260 -6.9232 -0.8322 40 1 2.4754 -8.3239 0.1927 41 1 1.2522 -7.5400 -0.9431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597612247.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:09 Heat of formation + Delta-G solvation = -49.972964 kcal Electronic energy + Delta-G solvation = -27437.002018 eV Core-core repulsion = 23444.845019 eV Total energy + Delta-G solvation = -3992.156999 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.62894 -40.53170 -38.54461 -38.26524 -37.13244 -35.72199 -35.00330 -34.65715 -33.97333 -30.46312 -29.58557 -28.31923 -27.44915 -26.23192 -24.49084 -22.99975 -22.32877 -21.37380 -20.47056 -19.64976 -19.27914 -18.24083 -17.61380 -17.53676 -16.82013 -16.80354 -16.61200 -16.51523 -15.90875 -15.83846 -15.71210 -15.33862 -14.80125 -14.43638 -14.14986 -14.03598 -14.01698 -13.76831 -13.52886 -13.42012 -13.30039 -13.25733 -13.12699 -12.92674 -12.84078 -12.37801 -12.22423 -12.21043 -12.03843 -11.94555 -11.54325 -11.40511 -10.97993 -10.85689 -10.60615 -10.42794 -10.15922 -9.86748 -8.11165 -6.24114 -1.17916 -0.96671 -0.59668 1.39566 1.41927 1.42918 1.51300 1.52850 1.85351 2.23959 2.37967 2.42395 2.82580 3.11331 3.16988 3.27646 3.42929 3.45029 3.51348 3.63550 4.04514 4.13807 4.20439 4.30205 4.49782 4.62891 4.66733 4.69062 4.76798 4.84052 4.89467 4.93415 5.01284 5.21674 5.26857 5.33999 5.47169 5.55233 5.66564 5.76306 6.21117 6.35915 6.53697 6.82507 7.02768 7.45327 8.96612 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010570 B = 0.004097 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.245654 B = 6833.410302 C = 7873.271971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.074 4.074 3 C 0.142 3.858 4 N -0.433 5.433 5 C -0.242 4.242 6 S 2.518 3.482 7 C -0.614 4.614 8 O -0.946 6.946 9 O -0.937 6.937 10 N -0.427 5.427 11 C 0.085 3.915 12 C 0.556 3.444 13 O -0.550 6.550 14 N -0.676 5.676 15 C 0.175 3.825 16 C -0.002 4.002 17 C -0.503 4.503 18 H 0.059 0.941 19 C 0.028 3.972 20 N -0.905 5.905 21 Si 0.944 3.056 22 H -0.279 1.279 23 H -0.288 1.288 24 H -0.264 1.264 25 C -0.184 4.184 26 C -0.146 4.146 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.238 0.762 31 H 0.146 0.854 32 H 0.174 0.826 33 H 0.161 0.839 34 H 0.414 0.586 35 H 0.044 0.956 36 H 0.049 0.951 37 H 0.259 0.741 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.121 19.010 -1.121 19.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.079 4.079 3 C -0.029 4.029 4 N -0.146 5.146 5 C -0.588 4.588 6 S 2.691 3.309 7 C -0.770 4.770 8 O -0.942 6.942 9 O -0.934 6.934 10 N -0.143 5.143 11 C -0.063 4.063 12 C 0.340 3.660 13 O -0.429 6.429 14 N -0.324 5.324 15 C 0.052 3.948 16 C -0.003 4.003 17 C -0.541 4.541 18 H 0.077 0.923 19 C -0.173 4.173 20 N -0.542 5.542 21 Si 0.770 3.230 22 H -0.205 1.205 23 H -0.214 1.214 24 H -0.188 1.188 25 C -0.222 4.222 26 C -0.185 4.185 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.132 0.868 30 H 0.254 0.746 31 H 0.165 0.835 32 H 0.192 0.808 33 H 0.179 0.821 34 H 0.251 0.749 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.608 18.713 -1.865 19.362 hybrid contribution -1.029 -0.654 1.414 1.867 sum 3.579 18.059 -0.450 18.416 Atomic orbital electron populations 1.21141 0.85831 1.05636 1.04713 1.22443 1.01436 0.93009 0.91009 1.24374 0.88768 0.99582 0.90146 1.68455 1.11559 1.27364 1.07253 1.36956 1.26767 0.87969 1.07062 1.05585 0.70877 0.73576 0.80879 1.29983 1.15052 1.14360 1.17588 1.93613 1.79305 1.45495 1.75833 1.93579 1.79440 1.44561 1.75804 1.68332 1.09711 1.29551 1.06704 1.21778 0.90152 0.95218 0.99120 1.17996 0.86518 0.83398 0.78134 1.90701 1.13205 1.86915 1.52114 1.45850 1.12648 1.05085 1.68816 1.20758 0.94478 0.81393 0.98187 1.19116 0.97082 0.91541 0.92569 1.20627 1.03120 1.38023 0.92332 0.92281 1.25644 0.95760 0.93935 1.01935 1.70102 1.15488 1.39153 1.29465 0.85764 0.79524 0.77325 0.80372 1.20473 1.21375 1.18809 1.23043 0.96477 1.05713 0.96925 1.22386 0.97701 0.95706 1.02680 0.88916 0.90079 0.86798 0.74607 0.83546 0.80848 0.82109 0.74896 0.93805 0.93260 0.93181 0.89430 0.89956 0.91651 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.22 8.85 71.24 0.63 -1.59 16 2 C -0.07 -1.71 5.95 -19.42 -0.12 -1.82 16 3 C 0.14 2.54 11.00 84.78 0.93 3.47 16 4 N -0.43 -9.93 10.07 -197.50 -1.99 -11.92 16 5 C -0.24 -6.37 7.37 180.92 1.33 -5.03 16 6 S 2.52 54.89 5.92 -56.49 -0.33 54.56 16 7 C -0.61 -6.34 10.80 113.37 1.22 -5.11 16 8 O -0.95 -28.41 17.71 -127.65 -2.26 -30.67 16 9 O -0.94 -24.21 17.71 -127.65 -2.26 -26.47 16 10 N -0.43 -13.36 9.36 -186.61 -1.75 -15.11 16 11 C 0.09 2.69 6.79 41.98 0.29 2.98 16 12 C 0.56 21.00 7.79 86.96 0.68 21.68 16 13 O -0.55 -22.09 13.45 -3.64 -0.05 -22.14 16 14 N -0.68 -27.58 5.36 -465.39 -2.50 -30.08 16 15 C 0.18 7.90 5.56 86.38 0.48 8.38 16 16 C 0.00 -0.11 1.50 -52.93 -0.08 -0.19 16 17 C -0.50 -25.93 8.39 25.60 0.21 -25.72 16 18 H 0.06 3.01 7.81 -2.91 -0.02 2.98 16 19 C 0.03 1.48 5.43 84.65 0.46 1.94 16 20 N -0.90 -50.25 12.74 21.45 0.27 -49.97 16 21 Si 0.94 41.74 29.54 68.60 2.03 43.77 16 22 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 25 C -0.18 -7.64 9.94 30.62 0.30 -7.33 16 26 C -0.15 -6.67 9.28 30.62 0.28 -6.39 16 27 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.08 2.10 5.93 -2.38 -0.01 2.09 16 29 H 0.11 1.15 8.06 -2.39 -0.02 1.14 16 30 H 0.24 1.60 8.06 -2.91 -0.02 1.58 16 31 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.17 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.16 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.41 16.71 7.66 -92.71 -0.71 16.00 16 35 H 0.04 2.25 8.10 -2.38 -0.02 2.23 16 36 H 0.05 2.10 8.11 -2.39 -0.02 2.08 16 37 H 0.26 13.89 8.32 -92.71 -0.77 13.12 16 38 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 40 H 0.06 3.23 8.14 -2.39 -0.02 3.21 16 41 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -75.80 369.00 -1.84 -77.64 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.37 Total: 25.12 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: 6.63 Total: -14.74 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -5.96 Total: -107.07 kcal Atomic # 8 Polarization: -74.71 SS G_CDS: -4.57 Total: -79.28 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Atomic # 16 Polarization: 54.89 SS G_CDS: -0.33 Total: 54.56 kcal Total: -75.80 -1.84 -77.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597612247.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.669 kcal (2) G-P(sol) polarization free energy of solvation -75.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds