Wall clock time and date at job start Tue Mar 31 2020 22:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47301 * 2 1 4 4 C 1.53006 * 109.47147 * 120.00406 * 2 1 3 5 5 H 1.09004 * 109.46828 * 299.99733 * 4 2 1 6 6 C 1.50697 * 109.47194 * 180.02562 * 4 2 1 7 7 O 1.20833 * 119.99747 * 240.00031 * 6 4 2 8 8 O 1.34230 * 120.00262 * 59.71653 * 6 4 2 9 9 C 1.45202 * 116.99836 * 180.27336 * 8 6 4 10 10 C 1.50701 * 109.46859 * 180.02562 * 9 8 6 11 11 O 1.21285 * 120.00079 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99566 * 180.02562 * 10 9 8 13 13 C 1.37102 * 119.99580 * 180.02562 * 12 10 9 14 14 H 1.07995 * 120.00075 * 0.02562 * 13 12 10 15 15 C 1.38949 * 119.99723 * 179.97438 * 13 12 10 16 16 N 1.31412 * 120.00524 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99739 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47073 * 90.00601 * 17 15 13 19 19 H 1.48505 * 109.47135 * 210.00601 * 17 15 13 20 20 H 1.48500 * 109.47214 * 330.00307 * 17 15 13 21 21 C 1.50693 * 109.47354 * 59.99629 * 4 2 1 22 22 C 1.38266 * 119.99436 * 59.72480 * 21 4 2 23 23 C 1.38215 * 120.03022 * 179.76932 * 22 21 4 24 24 C 1.38237 * 120.00946 * 0.50614 * 23 22 21 25 25 C 1.38323 * 119.98817 * 359.75041 * 24 23 22 26 26 Cl 1.73601 * 120.01376 * 180.02562 * 25 24 23 27 27 C 1.38191 * 119.99732 * 240.00718 * 21 4 2 28 28 H 1.08998 * 109.46872 * 299.99567 * 1 2 3 29 29 H 1.08994 * 109.46775 * 59.99757 * 1 2 3 30 30 H 1.08993 * 109.46902 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47038 * 240.00010 * 2 1 3 32 32 H 1.09003 * 109.47345 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47405 * 299.99857 * 3 2 1 34 34 H 1.09004 * 109.47066 * 60.00027 * 3 2 1 35 35 H 1.08998 * 109.47630 * 300.00638 * 9 8 6 36 36 H 1.09004 * 109.46770 * 60.01042 * 9 8 6 37 37 H 0.97001 * 120.00823 * 359.97438 * 12 10 9 38 38 H 0.96995 * 120.00385 * 179.97438 * 16 15 13 39 39 H 1.08002 * 119.98367 * 0.02562 * 22 21 4 40 40 H 1.07994 * 119.99714 * 180.25747 * 23 22 21 41 41 H 1.08004 * 120.00326 * 179.72136 * 24 23 22 42 42 H 1.08001 * 120.00554 * 359.97438 * 27 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 1.6767 -0.2075 2.1393 6 6 3.5470 -0.7208 1.2496 7 8 4.1515 -1.7671 1.2495 8 8 4.2178 0.4418 1.2442 9 6 5.6678 0.3662 1.2387 10 6 6.2434 1.7590 1.2338 11 8 5.5043 2.7206 1.2354 12 7 7.5795 1.9359 1.2278 13 6 8.1031 3.2030 1.2239 14 1 7.4450 4.0593 1.2261 15 6 9.4805 3.3854 1.2182 16 7 10.2814 2.3436 1.2160 17 14 10.1940 5.1119 1.2121 18 1 10.3886 5.5719 2.6106 19 1 11.5009 5.1049 0.5069 20 1 9.2597 6.0311 0.5140 21 6 1.5377 -2.1421 1.2492 22 6 1.8670 -2.9917 0.2093 23 6 1.4106 -4.2963 0.2109 24 6 0.6158 -4.7494 1.2472 25 6 0.2816 -3.8985 2.2852 26 17 -0.7159 -4.4670 3.5873 27 6 0.7431 -2.5940 2.2856 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 6.0075 -0.1638 2.1285 36 1 6.0004 -0.1678 0.3485 37 1 8.1707 1.1669 1.2269 38 1 11.2430 2.4709 1.2117 39 1 2.4846 -2.6369 -0.6026 40 1 1.6716 -4.9606 -0.5995 41 1 0.2555 -5.7676 1.2461 42 1 0.4825 -1.9291 3.0958 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750445032.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:32 Heat of formation + Delta-G solvation = -115.734452 kcal Electronic energy + Delta-G solvation = -26674.075755 eV Core-core repulsion = 22644.730666 eV Total energy + Delta-G solvation = -4029.345089 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.107 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.99101 -39.47853 -38.14467 -36.95258 -36.15017 -36.11755 -34.01322 -31.78948 -31.39691 -30.95096 -29.00709 -27.43716 -26.94299 -24.62850 -23.09083 -22.51748 -21.43050 -19.93137 -19.58678 -18.10011 -17.68707 -17.36909 -16.64412 -16.26546 -15.78422 -15.64346 -15.38620 -14.64562 -14.57531 -14.23981 -14.01900 -14.00460 -13.80846 -13.44569 -13.26750 -12.83892 -12.69372 -12.34247 -12.14668 -12.07427 -11.95871 -11.74271 -11.68630 -11.63704 -11.29997 -11.15680 -10.95072 -10.88442 -10.81065 -10.45547 -10.35810 -10.28369 -10.25886 -9.61662 -9.19890 -8.91369 -8.53300 -8.09750 -6.51424 -3.93509 0.87631 0.96820 1.84266 2.25306 2.66393 3.12030 3.22345 3.28011 3.40348 3.72334 4.09680 4.14894 4.40463 4.57971 4.65013 4.76925 4.80802 4.95504 5.05458 5.08546 5.13544 5.18242 5.19955 5.40429 5.48950 5.51646 5.57192 5.65945 5.67903 5.79908 5.90663 5.94200 6.03032 6.04417 6.05919 6.17592 6.26536 6.48454 6.57269 6.71870 7.46327 7.81374 7.94482 8.46803 9.05617 9.37962 9.87540 10.65798 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021526 B = 0.002228 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.467620 B =12562.366149 C =13063.116176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.162 4.162 4 C -0.037 4.037 5 H 0.118 0.882 6 C 0.462 3.538 7 O -0.505 6.505 8 O -0.315 6.315 9 C 0.055 3.945 10 C 0.439 3.561 11 O -0.575 6.575 12 N -0.553 5.553 13 C -0.302 4.302 14 H 0.106 0.894 15 C 0.025 3.975 16 N -0.897 5.897 17 Si 0.933 3.067 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.268 1.268 21 C -0.055 4.055 22 C -0.080 4.080 23 C -0.107 4.107 24 C -0.109 4.109 25 C -0.036 4.036 26 Cl -0.074 7.074 27 C -0.099 4.099 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.395 0.605 38 H 0.274 0.726 39 H 0.127 0.873 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.777 -13.164 -1.469 23.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 C -0.219 4.219 4 C -0.056 4.056 5 H 0.136 0.864 6 C 0.304 3.696 7 O -0.393 6.393 8 O -0.229 6.229 9 C -0.022 4.022 10 C 0.224 3.776 11 O -0.459 6.459 12 N -0.190 5.190 13 C -0.431 4.431 14 H 0.124 0.876 15 C -0.178 4.178 16 N -0.538 5.538 17 Si 0.760 3.240 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.193 1.193 21 C -0.055 4.055 22 C -0.098 4.098 23 C -0.125 4.125 24 C -0.128 4.128 25 C -0.063 4.063 26 Cl -0.045 7.045 27 C -0.118 4.118 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.228 0.772 38 H 0.084 0.916 39 H 0.145 0.855 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.932 -12.860 -1.355 23.760 hybrid contribution 0.968 0.044 0.246 1.000 sum -18.964 -12.816 -1.109 22.915 Atomic orbital electron populations 1.21839 0.93970 1.01950 1.02414 1.21133 0.96594 0.97371 0.95001 1.22140 1.04358 0.93432 1.01960 1.20141 0.88141 0.94102 1.03209 0.86370 1.23443 0.91133 0.82183 0.72815 1.90678 1.70272 1.33109 1.45220 1.86655 1.21015 1.32649 1.82615 1.22793 0.77126 0.98852 1.03461 1.19300 0.83614 0.88765 0.85971 1.90560 1.58706 1.41366 1.55226 1.41714 1.03993 1.09507 1.63827 1.19717 0.90672 0.84531 1.48173 0.87606 1.25313 0.95917 0.99641 0.96906 1.69610 1.04574 1.29924 1.49671 0.85806 0.78223 0.81467 0.78503 1.20261 1.20817 1.19271 1.19201 0.97433 0.94179 0.94692 1.21074 0.97450 0.93364 0.97953 1.21081 0.97282 0.95815 0.98337 1.21057 0.98823 0.99682 0.93241 1.20800 0.98925 0.94701 0.91830 1.98371 1.68293 1.89215 1.48626 1.20882 0.98021 0.94230 0.98633 0.92225 0.92022 0.92516 0.90601 0.89151 0.92513 0.92180 0.89630 0.89613 0.77192 0.91623 0.85490 0.84935 0.85020 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.95 37.16 0.33 -0.86 16 2 C -0.08 -0.84 2.31 -90.62 -0.21 -1.05 16 3 C -0.16 -2.00 8.67 37.16 0.32 -1.68 16 4 C -0.04 -0.41 2.10 -92.93 -0.19 -0.61 16 5 H 0.12 1.18 7.88 -51.93 -0.41 0.77 16 6 C 0.46 6.89 7.07 36.00 0.25 7.14 16 7 O -0.50 -8.43 14.88 -18.76 -0.28 -8.71 16 8 O -0.31 -5.45 6.66 -45.90 -0.31 -5.75 16 9 C 0.06 1.01 5.94 36.01 0.21 1.23 16 10 C 0.44 10.24 7.86 -10.99 -0.09 10.16 16 11 O -0.57 -15.32 16.08 -14.11 -0.23 -15.54 16 12 N -0.55 -13.74 5.29 -10.97 -0.06 -13.79 16 13 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 14 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 15 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 16 N -0.90 -23.89 13.05 55.50 0.72 -23.17 16 17 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 C -0.05 -0.58 3.13 -104.63 -0.33 -0.91 16 22 C -0.08 -0.83 7.94 -39.58 -0.31 -1.15 16 23 C -0.11 -0.95 10.05 -39.59 -0.40 -1.35 16 24 C -0.11 -0.97 9.83 -39.55 -0.39 -1.36 16 25 C -0.04 -0.35 6.32 -39.50 -0.25 -0.60 16 26 Cl -0.07 -0.68 28.96 -51.86 -1.50 -2.18 16 27 C -0.10 -0.99 9.46 -39.55 -0.37 -1.36 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.46 7.22 -51.93 -0.37 0.08 16 31 H 0.08 0.76 7.37 -51.93 -0.38 0.38 16 32 H 0.09 1.42 5.31 -51.93 -0.28 1.14 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.46 8.13 -51.93 -0.42 1.04 16 36 H 0.09 1.44 8.13 -51.93 -0.42 1.01 16 37 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 38 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.13 1.30 7.52 -52.49 -0.39 0.91 16 40 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 42 H 0.13 1.15 7.95 -52.49 -0.42 0.74 16 LS Contribution 372.14 15.07 5.61 5.61 Total: -1.00 -31.01 372.14 -8.19 -39.20 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -5.47 Total: 9.05 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -1.66 Total: -0.20 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.67 Total: -36.96 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.81 Total: -30.00 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.01 -8.19 -39.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750445032.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.535 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds