Wall clock time and date at job start Tue Mar 31 2020 22:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47301 * 2 1 4 4 C 1.53006 * 109.47147 * 120.00406 * 2 1 3 5 5 H 1.09004 * 109.46828 * 299.99733 * 4 2 1 6 6 C 1.50697 * 109.47194 * 180.02562 * 4 2 1 7 7 O 1.20833 * 119.99747 * 240.00031 * 6 4 2 8 8 O 1.34230 * 120.00262 * 59.71653 * 6 4 2 9 9 C 1.45202 * 116.99836 * 180.27336 * 8 6 4 10 10 C 1.50701 * 109.46859 * 180.02562 * 9 8 6 11 11 O 1.21285 * 120.00079 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99566 * 180.02562 * 10 9 8 13 13 C 1.37102 * 119.99580 * 180.02562 * 12 10 9 14 14 H 1.07995 * 120.00075 * 0.02562 * 13 12 10 15 15 C 1.38949 * 119.99723 * 179.97438 * 13 12 10 16 16 N 1.31412 * 120.00524 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99739 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47073 * 90.00601 * 17 15 13 19 19 H 1.48505 * 109.47135 * 210.00601 * 17 15 13 20 20 H 1.48500 * 109.47214 * 330.00307 * 17 15 13 21 21 C 1.50693 * 109.47354 * 59.99629 * 4 2 1 22 22 C 1.38266 * 119.99436 * 59.72480 * 21 4 2 23 23 C 1.38215 * 120.03022 * 179.76932 * 22 21 4 24 24 C 1.38237 * 120.00946 * 0.50614 * 23 22 21 25 25 C 1.38323 * 119.98817 * 359.75041 * 24 23 22 26 26 Cl 1.73601 * 120.01376 * 180.02562 * 25 24 23 27 27 C 1.38191 * 119.99732 * 240.00718 * 21 4 2 28 28 H 1.08998 * 109.46872 * 299.99567 * 1 2 3 29 29 H 1.08994 * 109.46775 * 59.99757 * 1 2 3 30 30 H 1.08993 * 109.46902 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47038 * 240.00010 * 2 1 3 32 32 H 1.09003 * 109.47345 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47405 * 299.99857 * 3 2 1 34 34 H 1.09004 * 109.47066 * 60.00027 * 3 2 1 35 35 H 1.08998 * 109.47630 * 300.00638 * 9 8 6 36 36 H 1.09004 * 109.46770 * 60.01042 * 9 8 6 37 37 H 0.97001 * 120.00823 * 359.97438 * 12 10 9 38 38 H 0.96995 * 120.00385 * 179.97438 * 16 15 13 39 39 H 1.08002 * 119.98367 * 0.02562 * 22 21 4 40 40 H 1.07994 * 119.99714 * 180.25747 * 23 22 21 41 41 H 1.08004 * 120.00326 * 179.72136 * 24 23 22 42 42 H 1.08001 * 120.00554 * 359.97438 * 27 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 1.6767 -0.2075 2.1393 6 6 3.5470 -0.7208 1.2496 7 8 4.1515 -1.7671 1.2495 8 8 4.2178 0.4418 1.2442 9 6 5.6678 0.3662 1.2387 10 6 6.2434 1.7590 1.2338 11 8 5.5043 2.7206 1.2354 12 7 7.5795 1.9359 1.2278 13 6 8.1031 3.2030 1.2239 14 1 7.4450 4.0593 1.2261 15 6 9.4805 3.3854 1.2182 16 7 10.2814 2.3436 1.2160 17 14 10.1940 5.1119 1.2121 18 1 10.3886 5.5719 2.6106 19 1 11.5009 5.1049 0.5069 20 1 9.2597 6.0311 0.5140 21 6 1.5377 -2.1421 1.2492 22 6 1.8670 -2.9917 0.2093 23 6 1.4106 -4.2963 0.2109 24 6 0.6158 -4.7494 1.2472 25 6 0.2816 -3.8985 2.2852 26 17 -0.7159 -4.4670 3.5873 27 6 0.7431 -2.5940 2.2856 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 6.0075 -0.1638 2.1285 36 1 6.0004 -0.1678 0.3485 37 1 8.1707 1.1669 1.2269 38 1 11.2430 2.4709 1.2117 39 1 2.4846 -2.6369 -0.6026 40 1 1.6716 -4.9606 -0.5995 41 1 0.2555 -5.7676 1.2461 42 1 0.4825 -1.9291 3.0958 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750445032.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:31 Heat of formation + Delta-G solvation = -131.387288 kcal Electronic energy + Delta-G solvation = -26674.754513 eV Core-core repulsion = 22644.730666 eV Total energy + Delta-G solvation = -4030.023847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.107 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.11251 -40.51912 -39.85874 -37.80402 -37.43099 -36.95129 -36.01252 -33.40361 -32.56874 -31.67876 -30.40661 -28.55788 -27.81226 -26.51443 -23.82169 -23.46351 -22.40636 -21.41449 -20.88729 -20.06706 -18.87966 -18.26603 -17.94131 -17.60400 -17.26153 -16.53279 -16.50883 -16.22268 -15.78059 -15.72830 -15.35319 -14.98822 -14.69255 -14.55176 -14.25021 -14.09089 -13.88802 -13.55820 -13.53373 -13.39751 -12.94842 -12.93907 -12.71155 -12.49963 -12.46999 -12.42939 -12.13798 -12.11627 -12.00630 -11.67717 -11.65959 -11.60787 -11.51827 -11.42252 -10.48320 -10.10904 -9.92385 -9.65311 -8.51957 -6.02296 0.12126 0.24585 1.06060 1.12164 1.36074 1.38875 1.46574 1.57814 1.88412 2.29383 2.63264 3.06029 3.13721 3.30997 3.56355 3.77277 3.84423 3.98904 4.07302 4.12408 4.15817 4.22426 4.22887 4.30478 4.41067 4.45036 4.62227 4.74635 4.86064 4.88328 5.05110 5.06845 5.20112 5.22377 5.29587 5.33980 5.37644 5.40814 5.49171 5.63822 5.79252 5.89717 6.46206 6.63184 7.03663 7.41134 7.94283 8.65165 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021526 B = 0.002228 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.467620 B =12562.366149 C =13063.116176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.075 4.075 3 C -0.159 4.159 4 C -0.030 4.030 5 H 0.131 0.869 6 C 0.462 3.538 7 O -0.523 6.523 8 O -0.327 6.327 9 C 0.065 3.935 10 C 0.439 3.561 11 O -0.611 6.611 12 N -0.561 5.561 13 C -0.335 4.335 14 H 0.085 0.915 15 C -0.010 4.010 16 N -0.917 5.917 17 Si 0.997 3.003 18 H -0.270 1.270 19 H -0.270 1.270 20 H -0.270 1.270 21 C -0.065 4.065 22 C -0.094 4.094 23 C -0.106 4.106 24 C -0.109 4.109 25 C -0.045 4.045 26 Cl -0.071 7.071 27 C -0.104 4.104 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.399 0.601 38 H 0.280 0.720 39 H 0.123 0.877 40 H 0.156 0.844 41 H 0.152 0.848 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.674 -14.085 -1.604 25.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.093 4.093 3 C -0.216 4.216 4 C -0.049 4.049 5 H 0.149 0.851 6 C 0.306 3.694 7 O -0.411 6.411 8 O -0.242 6.242 9 C -0.012 4.012 10 C 0.226 3.774 11 O -0.498 6.498 12 N -0.198 5.198 13 C -0.464 4.464 14 H 0.103 0.897 15 C -0.211 4.211 16 N -0.557 5.557 17 Si 0.820 3.180 18 H -0.195 1.195 19 H -0.195 1.195 20 H -0.195 1.195 21 C -0.065 4.065 22 C -0.112 4.112 23 C -0.124 4.124 24 C -0.127 4.127 25 C -0.072 4.072 26 Cl -0.042 7.042 27 C -0.123 4.123 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.233 0.767 38 H 0.090 0.910 39 H 0.141 0.859 40 H 0.173 0.827 41 H 0.169 0.831 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -20.831 -13.813 -1.489 25.039 hybrid contribution 1.192 0.257 0.288 1.253 sum -19.638 -13.556 -1.201 23.893 Atomic orbital electron populations 1.21784 0.91979 1.02510 1.03195 1.21085 0.98041 0.95636 0.94574 1.22078 1.02003 0.95182 1.02375 1.20236 0.85190 0.95248 1.04253 0.85083 1.24183 0.92361 0.81121 0.71726 1.90662 1.70904 1.33452 1.46130 1.86707 1.20136 1.34244 1.83082 1.22528 0.78291 0.95320 1.05036 1.20059 0.82944 0.90434 0.83971 1.90527 1.59468 1.43350 1.56426 1.41758 1.04737 1.09047 1.64284 1.19708 0.91253 0.85013 1.50442 0.89693 1.26118 0.95656 1.03500 0.95793 1.69671 1.05051 1.31574 1.49418 0.84871 0.77606 0.76779 0.78763 1.19520 1.19515 1.19461 1.19147 0.98255 0.93736 0.95362 1.21198 0.97841 0.94180 0.97960 1.21350 0.96647 0.95507 0.98929 1.21340 0.98194 1.00490 0.92674 1.20946 0.99140 0.94847 0.92256 1.98372 1.68181 1.89128 1.48528 1.21006 0.97924 0.94680 0.98679 0.91583 0.91150 0.92007 0.90481 0.92577 0.91589 0.92327 0.88065 0.87807 0.76702 0.91033 0.85862 0.82678 0.83075 0.83824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.95 71.98 0.64 -1.37 16 2 C -0.07 -1.46 2.31 -10.79 -0.02 -1.48 16 3 C -0.16 -3.91 8.67 71.98 0.62 -3.29 16 4 C -0.03 -0.66 2.10 -12.29 -0.03 -0.68 16 5 H 0.13 2.47 7.88 -2.38 -0.02 2.45 16 6 C 0.46 13.61 7.07 71.23 0.50 14.11 16 7 O -0.52 -17.13 14.88 21.94 0.33 -16.80 16 8 O -0.33 -11.38 6.66 -45.06 -0.30 -11.68 16 9 C 0.07 2.41 5.94 71.24 0.42 2.84 16 10 C 0.44 20.99 7.86 87.66 0.69 21.67 16 11 O -0.61 -33.65 16.08 15.75 0.25 -33.40 16 12 N -0.56 -28.47 5.29 -306.99 -1.62 -30.09 16 13 C -0.34 -18.63 9.68 84.04 0.81 -17.82 16 14 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 15 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 16 N -0.92 -48.63 13.05 21.66 0.28 -48.35 16 17 Si 1.00 41.84 29.55 68.60 2.03 43.87 16 18 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 19 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 21 C -0.06 -1.29 3.13 -19.87 -0.06 -1.35 16 22 C -0.09 -1.81 7.94 22.27 0.18 -1.63 16 23 C -0.11 -1.67 10.05 22.26 0.22 -1.44 16 24 C -0.11 -1.67 9.83 22.29 0.22 -1.46 16 25 C -0.05 -0.80 6.32 22.32 0.14 -0.66 16 26 Cl -0.07 -1.18 28.96 -2.72 -0.08 -1.26 16 27 C -0.10 -1.92 9.46 22.29 0.21 -1.70 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.87 7.22 -2.39 -0.02 0.85 16 31 H 0.08 1.48 7.37 -2.38 -0.02 1.47 16 32 H 0.06 1.80 5.31 -2.39 -0.01 1.79 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.10 3.42 8.13 -2.39 -0.02 3.40 16 36 H 0.10 3.45 8.13 -2.38 -0.02 3.43 16 37 H 0.40 19.20 7.90 -92.71 -0.73 18.47 16 38 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 39 H 0.12 2.42 7.52 -2.91 -0.02 2.40 16 40 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 42 H 0.14 2.24 7.95 -2.91 -0.02 2.22 16 Total: -1.00 -66.81 372.14 6.23 -60.58 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.32 Total: 31.46 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 5.02 Total: 5.67 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -1.34 Total: -78.44 kcal Atomic # 8 Polarization: -62.16 SS G_CDS: 0.28 Total: -61.88 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.26 kcal Total: -66.81 6.23 -60.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750445032.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.808 kcal (2) G-P(sol) polarization free energy of solvation -66.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds