Wall clock time and date at job start Tue Mar 31 2020 22:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47135 * 2 1 4 4 C 1.50701 * 109.47291 * 239.99806 * 2 1 3 5 5 O 1.21277 * 120.00150 * 262.03810 * 4 2 1 6 6 N 1.34775 * 120.00109 * 82.04202 * 4 2 1 7 7 C 1.47026 * 125.64666 * 0.02562 * 6 4 2 8 8 C 1.54319 * 107.27295 * 181.02753 * 7 6 4 9 9 C 1.55157 * 102.94293 * 22.19120 * 8 7 6 10 10 O 1.42897 * 111.00401 * 82.57258 * 9 8 7 11 11 C 1.50696 * 111.00829 * 206.38866 * 9 8 7 12 12 H 1.07998 * 120.00495 * 118.54573 * 11 9 8 13 13 C 1.37878 * 119.99834 * 298.54890 * 11 9 8 14 14 N 1.31516 * 120.00142 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 120.00034 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47132 * 59.99956 * 15 13 11 17 17 H 1.48497 * 109.47131 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46781 * 299.99677 * 15 13 11 19 19 C 1.47422 * 125.65235 * 179.71848 * 6 4 2 20 20 C 1.50704 * 109.47051 * 119.99709 * 2 1 3 21 21 C 1.38238 * 119.98690 * 232.49104 * 20 2 1 22 22 C 1.38219 * 120.01492 * 179.97438 * 21 20 2 23 23 C 1.38348 * 119.98256 * 359.97438 * 22 21 20 24 24 Cl 1.73604 * 120.01343 * 180.02562 * 23 22 21 25 25 C 1.38358 * 119.97797 * 0.02562 * 23 22 21 26 26 C 1.38217 * 119.98248 * 359.97438 * 25 23 22 27 27 H 1.08996 * 109.46807 * 299.99991 * 1 2 3 28 28 H 1.08997 * 109.46707 * 60.00514 * 1 2 3 29 29 H 1.09001 * 109.46397 * 180.02562 * 1 2 3 30 30 H 0.96700 * 114.00530 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.88431 * 300.44349 * 7 6 4 32 32 H 1.08996 * 109.88301 * 61.45246 * 7 6 4 33 33 H 1.08996 * 110.72548 * 140.55697 * 8 7 6 34 34 H 1.09001 * 110.72080 * 263.83052 * 8 7 6 35 35 H 0.96700 * 114.00086 * 61.45609 * 10 9 8 36 36 H 0.97002 * 119.99953 * 179.97438 * 14 13 11 37 37 H 1.08996 * 110.36396 * 274.74299 * 19 6 4 38 38 H 1.08996 * 110.36491 * 37.06624 * 19 6 4 39 39 H 1.08003 * 119.99312 * 0.25225 * 21 20 2 40 40 H 1.07993 * 120.00723 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.00966 * 179.97438 * 25 23 22 42 42 H 1.07997 * 119.98801 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.3717 -1.8729 -1.1634 6 7 2.1047 -0.0540 -2.4053 7 6 1.7283 1.3498 -2.6270 8 6 1.9541 1.6540 -4.1230 9 6 1.9082 0.2466 -4.7746 10 8 0.5601 -0.1665 -5.0070 11 6 2.7072 0.2163 -6.0519 12 1 3.5576 -0.4434 -6.1414 13 6 2.3526 1.0308 -7.1063 14 7 1.3168 1.8338 -6.9975 15 14 3.3435 0.9938 -8.6895 16 1 3.3062 -0.3746 -9.2649 17 1 2.7619 1.9555 -9.6600 18 1 4.7505 1.3717 -8.4016 19 6 2.5803 -0.6228 -3.6795 20 6 2.0323 -0.7104 1.2305 21 6 2.9500 -0.0920 2.0591 22 6 3.4107 -0.7427 3.1881 23 6 2.9528 -2.0131 3.4891 24 17 3.5304 -2.8309 4.9074 25 6 2.0344 -2.6315 2.6595 26 6 1.5745 -1.9797 1.5308 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 2.9703 1.4237 0.0004 31 1 0.6784 1.4967 -2.3733 32 1 2.3519 2.0019 -2.0156 33 1 1.1560 2.2856 -4.5130 34 1 2.9271 2.1197 -4.2793 35 1 0.0713 0.4083 -5.6117 36 1 1.0676 2.4072 -7.7392 37 1 3.6657 -0.5488 -3.7462 38 1 2.2635 -1.6615 -3.7730 39 1 3.3036 0.9017 1.8266 40 1 4.1273 -0.2594 3.8355 41 1 1.6769 -3.6234 2.8938 42 1 0.8573 -2.4622 0.8834 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844017579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:44 Heat of formation + Delta-G solvation = -107.993043 kcal Electronic energy + Delta-G solvation = -27768.052997 eV Core-core repulsion = 23739.043600 eV Total energy + Delta-G solvation = -4029.009396 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.72515 -39.05848 -37.52033 -36.84697 -36.39300 -34.28656 -32.40687 -32.26044 -31.13553 -30.02607 -29.21404 -28.26860 -25.53634 -24.35493 -22.94037 -22.57238 -21.23881 -19.84490 -19.33145 -18.26633 -17.27411 -16.99172 -16.09823 -15.81095 -15.49699 -15.13038 -14.98104 -14.69824 -14.34741 -14.13147 -13.77099 -13.58654 -13.38913 -13.05033 -12.89674 -12.65885 -12.41786 -12.25181 -12.07182 -11.81175 -11.73505 -11.68672 -11.47332 -11.33514 -11.31850 -11.00761 -10.93159 -10.69837 -10.57783 -10.52700 -10.04385 -9.45540 -9.29902 -9.14116 -8.76693 -8.69816 -8.25587 -8.04433 -6.31783 -4.40091 0.90505 1.14015 1.92054 2.79869 3.19177 3.21537 3.24356 3.28708 3.58810 3.97006 4.23622 4.38850 4.56537 4.68151 4.71927 4.96162 4.97489 5.16426 5.28804 5.44689 5.54933 5.59349 5.61789 5.72088 5.76305 5.88548 5.95806 6.01811 6.05584 6.09198 6.31829 6.33417 6.38196 6.58158 6.59417 6.85975 6.90318 7.26581 7.27208 7.32352 7.69688 7.96655 8.04051 8.45848 8.62273 9.26623 9.35389 10.75482 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.027968 B = 0.002531 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.918032 B =11062.224577 C =11295.003589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.166 3.834 3 O -0.537 6.537 4 C 0.498 3.502 5 O -0.544 6.544 6 N -0.593 5.593 7 C 0.104 3.896 8 C -0.139 4.139 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.537 4.537 12 H 0.063 0.937 13 C 0.074 3.926 14 N -0.895 5.895 15 Si 0.903 3.097 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.118 3.882 20 C -0.093 4.093 21 C -0.097 4.097 22 C -0.113 4.113 23 C -0.033 4.033 24 Cl -0.077 7.077 25 C -0.112 4.112 26 C -0.065 4.065 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.379 0.621 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.381 0.619 36 H 0.269 0.731 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.439 -0.606 18.307 18.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.122 3.878 3 O -0.344 6.344 4 C 0.284 3.716 5 O -0.422 6.422 6 N -0.325 5.325 7 C -0.018 4.018 8 C -0.178 4.178 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.575 4.575 12 H 0.081 0.919 13 C -0.129 4.129 14 N -0.533 5.533 15 Si 0.730 3.270 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.004 4.004 20 C -0.094 4.094 21 C -0.115 4.115 22 C -0.132 4.132 23 C -0.059 4.059 24 Cl -0.048 7.048 25 C -0.131 4.131 26 C -0.083 4.083 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.228 0.772 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.231 0.769 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.095 -1.526 18.838 18.900 hybrid contribution 1.056 0.372 -1.201 1.642 sum 1.151 -1.154 17.637 17.712 Atomic orbital electron populations 1.21786 0.89707 1.03479 1.04249 1.20121 0.96652 0.81693 0.89363 1.86646 1.27169 1.24034 1.96514 1.20638 0.79569 0.87123 0.84259 1.90692 1.49883 1.16570 1.85077 1.48608 1.61845 1.13601 1.08433 1.22308 0.99555 0.80911 0.99064 1.23227 1.02661 1.01307 0.90620 1.19625 0.81209 0.87499 0.90826 1.86127 1.26194 1.57188 1.69628 1.21392 1.14102 1.23606 0.98389 0.91850 1.24979 0.94960 0.94140 0.98841 1.69706 1.26251 1.24684 1.32701 0.86481 0.80147 0.78097 0.82286 1.20008 1.21112 1.20062 1.22472 0.97922 0.98825 0.81135 1.20155 0.97686 0.95457 0.96132 1.20876 0.96443 1.00146 0.94028 1.20940 1.00836 0.93354 0.98066 1.20956 0.99674 0.94435 0.90852 1.98363 1.88081 1.79073 1.39288 1.21034 0.97128 1.00519 0.94422 1.20930 0.98912 0.93374 0.95098 0.90564 0.90337 0.90400 0.77165 0.92327 0.91697 0.89569 0.91471 0.76943 0.92153 0.90969 0.91180 0.84723 0.84890 0.84824 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.55 37.16 0.32 -1.34 16 2 C 0.17 2.23 0.88 -92.92 -0.08 2.15 16 3 O -0.54 -6.37 9.31 -35.23 -0.33 -6.70 16 4 C 0.50 8.74 6.74 -10.99 -0.07 8.67 16 5 O -0.54 -11.07 15.47 5.56 0.09 -10.99 16 6 N -0.59 -11.07 3.32 -170.38 -0.57 -11.64 16 7 C 0.10 1.80 5.69 -3.06 -0.02 1.78 16 8 C -0.14 -2.89 5.38 -24.90 -0.13 -3.02 16 9 C 0.25 5.80 0.87 -89.50 -0.08 5.72 16 10 O -0.58 -14.37 13.17 -35.23 -0.46 -14.83 16 11 C -0.54 -13.63 8.27 -34.44 -0.28 -13.91 16 12 H 0.06 1.61 7.79 -52.49 -0.41 1.20 16 13 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 14 N -0.89 -22.46 10.76 55.43 0.60 -21.86 16 15 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 17 H -0.29 -6.23 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 C 0.12 2.54 6.10 -2.41 -0.01 2.53 16 20 C -0.09 -1.17 4.53 -104.62 -0.47 -1.65 16 21 C -0.10 -1.04 9.24 -39.59 -0.37 -1.41 16 22 C -0.11 -1.17 9.83 -39.55 -0.39 -1.56 16 23 C -0.03 -0.36 6.32 -39.50 -0.25 -0.61 16 24 Cl -0.08 -0.77 28.96 -51.86 -1.50 -2.27 16 25 C -0.11 -1.27 9.83 -39.54 -0.39 -1.66 16 26 C -0.06 -0.81 8.00 -39.59 -0.32 -1.13 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.04 6.86 -51.93 -0.36 0.68 16 29 H 0.08 0.91 7.00 -51.93 -0.36 0.55 16 30 H 0.38 3.57 7.61 45.56 0.35 3.92 16 31 H 0.06 1.00 6.87 -51.93 -0.36 0.64 16 32 H 0.06 0.97 6.53 -51.93 -0.34 0.64 16 33 H 0.09 1.89 7.54 -51.93 -0.39 1.49 16 34 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 35 H 0.38 9.37 7.56 45.56 0.34 9.72 16 36 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 37 H 0.07 1.51 8.04 -51.93 -0.42 1.10 16 38 H 0.07 1.62 8.03 -51.93 -0.42 1.20 16 39 H 0.14 1.15 6.43 -52.48 -0.34 0.81 16 40 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 41 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.13 1.68 7.02 -52.49 -0.37 1.31 16 LS Contribution 355.26 15.07 5.35 5.35 Total: -1.00 -28.26 355.26 -8.38 -36.64 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -3.89 Total: 15.20 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -2.65 Total: -3.69 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.03 Total: -33.50 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.71 Total: -32.52 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.26 -8.38 -36.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844017579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.356 kcal (2) G-P(sol) polarization free energy of solvation -28.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds