Wall clock time and date at job start Tue Mar 31 2020 22:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47135 * 2 1 4 4 C 1.50701 * 109.47291 * 239.99806 * 2 1 3 5 5 O 1.21277 * 120.00150 * 262.03810 * 4 2 1 6 6 N 1.34775 * 120.00109 * 82.04202 * 4 2 1 7 7 C 1.47026 * 125.64666 * 0.02562 * 6 4 2 8 8 C 1.54319 * 107.27295 * 181.02753 * 7 6 4 9 9 C 1.55157 * 102.94293 * 22.19120 * 8 7 6 10 10 O 1.42897 * 111.00401 * 82.57258 * 9 8 7 11 11 C 1.50696 * 111.00829 * 206.38866 * 9 8 7 12 12 H 1.07998 * 120.00495 * 118.54573 * 11 9 8 13 13 C 1.37878 * 119.99834 * 298.54890 * 11 9 8 14 14 N 1.31516 * 120.00142 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 120.00034 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47132 * 59.99956 * 15 13 11 17 17 H 1.48497 * 109.47131 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46781 * 299.99677 * 15 13 11 19 19 C 1.47422 * 125.65235 * 179.71848 * 6 4 2 20 20 C 1.50704 * 109.47051 * 119.99709 * 2 1 3 21 21 C 1.38238 * 119.98690 * 232.49104 * 20 2 1 22 22 C 1.38219 * 120.01492 * 179.97438 * 21 20 2 23 23 C 1.38348 * 119.98256 * 359.97438 * 22 21 20 24 24 Cl 1.73604 * 120.01343 * 180.02562 * 23 22 21 25 25 C 1.38358 * 119.97797 * 0.02562 * 23 22 21 26 26 C 1.38217 * 119.98248 * 359.97438 * 25 23 22 27 27 H 1.08996 * 109.46807 * 299.99991 * 1 2 3 28 28 H 1.08997 * 109.46707 * 60.00514 * 1 2 3 29 29 H 1.09001 * 109.46397 * 180.02562 * 1 2 3 30 30 H 0.96700 * 114.00530 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.88431 * 300.44349 * 7 6 4 32 32 H 1.08996 * 109.88301 * 61.45246 * 7 6 4 33 33 H 1.08996 * 110.72548 * 140.55697 * 8 7 6 34 34 H 1.09001 * 110.72080 * 263.83052 * 8 7 6 35 35 H 0.96700 * 114.00086 * 61.45609 * 10 9 8 36 36 H 0.97002 * 119.99953 * 179.97438 * 14 13 11 37 37 H 1.08996 * 110.36396 * 274.74299 * 19 6 4 38 38 H 1.08996 * 110.36491 * 37.06624 * 19 6 4 39 39 H 1.08003 * 119.99312 * 0.25225 * 21 20 2 40 40 H 1.07993 * 120.00723 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.00966 * 179.97438 * 25 23 22 42 42 H 1.07997 * 119.98801 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.3717 -1.8729 -1.1634 6 7 2.1047 -0.0540 -2.4053 7 6 1.7283 1.3498 -2.6270 8 6 1.9541 1.6540 -4.1230 9 6 1.9082 0.2466 -4.7746 10 8 0.5601 -0.1665 -5.0070 11 6 2.7072 0.2163 -6.0519 12 1 3.5576 -0.4434 -6.1414 13 6 2.3526 1.0308 -7.1063 14 7 1.3168 1.8338 -6.9975 15 14 3.3435 0.9938 -8.6895 16 1 3.3062 -0.3746 -9.2649 17 1 2.7619 1.9555 -9.6600 18 1 4.7505 1.3717 -8.4016 19 6 2.5803 -0.6228 -3.6795 20 6 2.0323 -0.7104 1.2305 21 6 2.9500 -0.0920 2.0591 22 6 3.4107 -0.7427 3.1881 23 6 2.9528 -2.0131 3.4891 24 17 3.5304 -2.8309 4.9074 25 6 2.0344 -2.6315 2.6595 26 6 1.5745 -1.9797 1.5308 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 2.9703 1.4237 0.0004 31 1 0.6784 1.4967 -2.3733 32 1 2.3519 2.0019 -2.0156 33 1 1.1560 2.2856 -4.5130 34 1 2.9271 2.1197 -4.2793 35 1 0.0713 0.4083 -5.6117 36 1 1.0676 2.4072 -7.7392 37 1 3.6657 -0.5488 -3.7462 38 1 2.2635 -1.6615 -3.7730 39 1 3.3036 0.9017 1.8266 40 1 4.1273 -0.2594 3.8355 41 1 1.6769 -3.6234 2.8938 42 1 0.8573 -2.4622 0.8834 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844017579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:43 Heat of formation + Delta-G solvation = -126.984182 kcal Electronic energy + Delta-G solvation = -27768.876514 eV Core-core repulsion = 23739.043600 eV Total energy + Delta-G solvation = -4029.832914 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.107 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.89606 -40.25279 -38.95568 -38.00384 -37.27016 -36.00104 -34.20763 -33.36734 -31.97511 -31.56727 -30.33286 -29.86338 -27.23827 -25.58081 -23.95025 -23.74704 -22.46696 -21.51364 -20.61544 -19.37964 -19.01613 -18.23254 -17.16653 -17.00206 -16.88085 -16.79695 -16.36639 -16.08643 -15.51709 -15.49299 -14.95545 -14.60819 -14.55662 -14.35301 -14.28732 -13.79703 -13.67821 -13.62941 -13.36721 -13.26706 -13.13965 -12.98608 -12.79060 -12.60563 -12.52005 -12.46058 -12.32328 -12.26892 -11.82506 -11.79575 -11.73874 -11.26193 -10.69657 -10.52285 -10.13523 -10.01749 -9.66058 -9.55898 -8.22925 -6.37814 0.02296 0.30469 1.10118 1.42637 1.43761 1.45911 1.52392 1.94382 2.40274 2.60800 3.00547 3.02961 3.39726 3.41959 3.74291 3.80452 3.91031 4.03664 4.07505 4.32681 4.34359 4.41706 4.43957 4.58654 4.60949 4.66467 4.71489 4.79768 4.94265 4.95110 5.07615 5.16582 5.20422 5.21483 5.26611 5.44800 5.47436 5.56767 5.74258 5.78648 6.09391 6.38392 6.60358 6.66053 7.04739 7.32113 7.40443 8.82484 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.027968 B = 0.002531 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.918032 B =11062.224577 C =11295.003589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.183 3.817 3 O -0.533 6.533 4 C 0.495 3.505 5 O -0.575 6.575 6 N -0.596 5.596 7 C 0.116 3.884 8 C -0.130 4.130 9 C 0.235 3.765 10 O -0.593 6.593 11 C -0.562 4.562 12 H 0.053 0.947 13 C 0.038 3.962 14 N -0.905 5.905 15 Si 0.957 3.043 16 H -0.280 1.280 17 H -0.280 1.280 18 H -0.271 1.271 19 C 0.124 3.876 20 C -0.109 4.109 21 C -0.095 4.095 22 C -0.113 4.113 23 C -0.040 4.040 24 Cl -0.069 7.069 25 C -0.119 4.119 26 C -0.080 4.080 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.392 0.608 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.377 0.623 36 H 0.271 0.729 37 H 0.074 0.926 38 H 0.045 0.955 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.145 0.855 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.112 0.657 19.888 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.138 3.862 3 O -0.341 6.341 4 C 0.283 3.717 5 O -0.456 6.456 6 N -0.328 5.328 7 C -0.006 4.006 8 C -0.168 4.168 9 C 0.195 3.805 10 O -0.401 6.401 11 C -0.601 4.601 12 H 0.072 0.928 13 C -0.164 4.164 14 N -0.544 5.544 15 Si 0.783 3.217 16 H -0.205 1.205 17 H -0.205 1.205 18 H -0.196 1.196 19 C 0.001 3.999 20 C -0.110 4.110 21 C -0.113 4.113 22 C -0.131 4.131 23 C -0.066 4.066 24 Cl -0.040 7.040 25 C -0.138 4.138 26 C -0.098 4.098 27 H 0.116 0.884 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.243 0.757 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.227 0.773 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.177 0.823 40 H 0.174 0.826 41 H 0.163 0.837 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.772 -0.247 20.441 20.457 hybrid contribution 0.864 -0.081 -1.663 1.876 sum 1.635 -0.328 18.777 18.851 Atomic orbital electron populations 1.21821 0.88989 1.03719 1.04752 1.19881 0.97034 0.81897 0.87379 1.86633 1.28514 1.22721 1.96255 1.21547 0.78420 0.86909 0.84869 1.90671 1.51040 1.18216 1.85651 1.48645 1.62195 1.14024 1.07922 1.22275 1.00692 0.80553 0.97086 1.23014 1.01832 0.99269 0.92719 1.19794 0.80310 0.89493 0.90915 1.86117 1.26956 1.57542 1.69522 1.21630 1.14461 1.23992 0.99970 0.92849 1.25578 0.95831 0.93830 1.01126 1.69772 1.26671 1.24631 1.33286 0.85626 0.79150 0.77709 0.79201 1.20533 1.20479 1.19579 1.22209 0.97847 0.97285 0.82567 1.20165 0.98910 0.95693 0.96268 1.21159 0.95433 1.01092 0.93570 1.21246 1.00750 0.93012 0.98101 1.21129 0.99529 0.94898 0.91054 1.98366 1.87915 1.78998 1.38725 1.21176 0.97301 1.01092 0.94208 1.20974 0.99404 0.93816 0.95634 0.88415 0.91336 0.90453 0.75679 0.91655 0.88470 0.90899 0.91943 0.77325 0.91981 0.90818 0.93671 0.82250 0.82588 0.83729 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.55 71.98 0.62 -2.52 16 2 C 0.18 4.58 0.88 -12.28 -0.01 4.57 16 3 O -0.53 -10.97 9.31 -148.98 -1.39 -12.35 16 4 C 0.49 17.04 6.74 87.66 0.59 17.63 16 5 O -0.58 -23.62 15.47 -3.02 -0.05 -23.67 16 6 N -0.60 -21.96 3.32 -811.37 -2.70 -24.65 16 7 C 0.12 3.83 5.69 86.73 0.49 4.33 16 8 C -0.13 -5.33 5.38 31.78 0.17 -5.15 16 9 C 0.23 11.12 0.87 -10.07 -0.01 11.11 16 10 O -0.59 -29.89 13.17 -148.98 -1.96 -31.85 16 11 C -0.56 -29.00 8.27 25.60 0.21 -28.79 16 12 H 0.05 2.78 7.79 -2.91 -0.02 2.75 16 13 C 0.04 1.91 5.29 84.65 0.45 2.36 16 14 N -0.90 -45.44 10.76 21.45 0.23 -45.21 16 15 Si 0.96 40.54 29.54 68.60 2.03 42.57 16 16 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 19 C 0.12 5.43 6.10 86.93 0.53 5.96 16 20 C -0.11 -2.56 4.53 -19.86 -0.09 -2.65 16 21 C -0.09 -1.77 9.24 22.27 0.21 -1.56 16 22 C -0.11 -2.01 9.83 22.29 0.22 -1.80 16 23 C -0.04 -0.80 6.32 22.32 0.14 -0.65 16 24 Cl -0.07 -1.25 28.96 -2.72 -0.08 -1.33 16 25 C -0.12 -2.57 9.83 22.29 0.22 -2.35 16 26 C -0.08 -1.94 8.00 22.26 0.18 -1.77 16 27 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.07 1.72 6.86 -2.39 -0.02 1.70 16 29 H 0.08 1.77 7.00 -2.39 -0.02 1.75 16 30 H 0.39 5.93 7.61 -74.06 -0.56 5.36 16 31 H 0.07 2.11 6.87 -2.39 -0.02 2.10 16 32 H 0.10 2.62 6.53 -2.39 -0.02 2.60 16 33 H 0.07 3.18 7.54 -2.39 -0.02 3.16 16 34 H 0.06 2.59 8.03 -2.39 -0.02 2.57 16 35 H 0.38 19.03 7.56 -74.06 -0.56 18.47 16 36 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 37 H 0.07 3.16 8.04 -2.39 -0.02 3.14 16 38 H 0.04 2.17 8.03 -2.39 -0.02 2.15 16 39 H 0.16 2.08 6.43 -2.91 -0.02 2.07 16 40 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 42 H 0.13 3.18 7.02 -2.91 -0.02 3.16 16 Total: -1.00 -60.67 355.26 -0.04 -60.71 By element: Atomic # 1 Polarization: 37.12 SS G_CDS: -0.04 Total: 37.08 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 3.91 Total: -1.29 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: -2.47 Total: -69.86 kcal Atomic # 8 Polarization: -64.47 SS G_CDS: -3.40 Total: -67.87 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.08 Total: -1.33 kcal Total: -60.67 -0.04 -60.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844017579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.275 kcal (2) G-P(sol) polarization free energy of solvation -60.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds