Wall clock time and date at job start Tue Mar 31 2020 22:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47069 * 304.99600 * 4 3 2 6 6 C 1.50703 * 109.46801 * 184.99876 * 4 3 2 7 7 O 1.20825 * 119.99940 * 239.99574 * 6 4 3 8 8 O 1.34237 * 120.00016 * 60.00027 * 6 4 3 9 9 C 1.45200 * 116.99747 * 179.97438 * 8 6 4 10 10 C 1.50704 * 109.46689 * 179.97438 * 9 8 6 11 11 O 1.21293 * 119.99888 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99839 * 179.97438 * 10 9 8 13 13 C 1.37097 * 119.99932 * 179.97438 * 12 10 9 14 14 H 1.07996 * 119.99915 * 0.02562 * 13 12 10 15 15 C 1.38949 * 119.99869 * 180.02562 * 13 12 10 16 16 N 1.31414 * 119.99841 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99975 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47300 * 90.00289 * 17 15 13 19 19 H 1.48501 * 109.46835 * 210.00172 * 17 15 13 20 20 H 1.48493 * 109.47192 * 329.99845 * 17 15 13 21 21 C 1.50697 * 109.47204 * 65.00067 * 4 3 2 22 22 C 1.38267 * 119.99167 * 239.99662 * 21 4 3 23 23 C 1.38214 * 120.02600 * 179.97438 * 22 21 4 24 24 C 1.38231 * 120.01419 * 0.02562 * 23 22 21 25 25 C 1.38331 * 119.98736 * 359.97438 * 24 23 22 26 26 Cl 1.73601 * 120.01338 * 179.97438 * 25 24 23 27 27 C 1.38185 * 119.99315 * 59.72768 * 21 4 3 28 28 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 30 30 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 32 32 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 33 33 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 34 34 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 35 35 H 1.09001 * 109.47001 * 299.99744 * 9 8 6 36 36 H 1.08996 * 109.47039 * 60.00486 * 9 8 6 37 37 H 0.96998 * 119.99615 * 0.02562 * 12 10 9 38 38 H 0.97001 * 119.99847 * 179.97438 * 16 15 13 39 39 H 1.08003 * 119.98300 * 359.97438 * 22 21 4 40 40 H 1.08000 * 119.99156 * 180.02562 * 23 22 21 41 41 H 1.08003 * 120.00517 * 180.02562 * 24 23 22 42 42 H 1.07991 * 120.01047 * 359.97438 * 27 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9336 0.8528 0.8410 6 6 4.0724 2.8577 0.1232 7 8 4.7668 3.3305 -0.7453 8 8 3.7486 3.5933 1.1984 9 6 4.2683 4.9481 1.2510 10 6 3.8038 5.6152 2.5200 11 8 3.1040 5.0084 3.3031 12 7 4.1668 6.8858 2.7851 13 6 3.7437 7.4929 3.9393 14 1 3.1200 6.9529 4.6361 15 6 4.1175 8.8030 4.2123 16 7 3.7125 9.3848 5.3189 17 14 5.1970 9.7368 3.0073 18 1 4.3410 10.4485 2.0245 19 1 6.0263 10.7223 3.7465 20 1 6.0820 8.7821 2.2930 21 6 4.0718 0.8421 -1.2886 22 6 4.8667 -0.2889 -1.2605 23 6 5.3268 -0.8404 -2.4414 24 6 4.9930 -0.2611 -3.6513 25 6 4.1977 0.8704 -3.6801 26 17 3.7786 1.5988 -5.1991 27 6 3.7328 1.4188 -2.4977 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 5.3578 4.9202 1.2325 36 1 3.9045 5.5104 0.3912 37 1 4.7267 7.3709 2.1590 38 1 3.9737 10.2993 5.5097 39 1 5.1281 -0.7416 -0.3154 40 1 5.9473 -1.7240 -2.4188 41 1 5.3523 -0.6924 -4.5740 42 1 3.1080 2.2994 -2.5198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859804635.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:48 Heat of formation + Delta-G solvation = -114.702745 kcal Electronic energy + Delta-G solvation = -26372.934810 eV Core-core repulsion = 22343.634459 eV Total energy + Delta-G solvation = -4029.300351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.107 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.94965 -39.54112 -38.32269 -36.90168 -36.22872 -35.90097 -34.07315 -32.49898 -31.81090 -31.05647 -29.62213 -28.35325 -25.37968 -24.41948 -23.21544 -22.60340 -21.37834 -20.28742 -19.65738 -18.61408 -17.66471 -17.45448 -16.55385 -16.34898 -15.94929 -15.62885 -15.41496 -15.20841 -14.87786 -14.43352 -14.02835 -13.87889 -13.79744 -13.51754 -13.49364 -13.01451 -12.77457 -12.44216 -12.35394 -12.23189 -12.07668 -11.93094 -11.81377 -11.56936 -11.39118 -11.31903 -11.26907 -11.05987 -10.79980 -10.65997 -10.53853 -10.33847 -10.05984 -9.68701 -9.20111 -8.98534 -8.67881 -8.30429 -6.40347 -3.93259 0.81292 0.95203 1.86784 2.17315 2.56434 2.98069 3.02738 3.11437 3.35219 3.54189 4.02833 4.08669 4.27856 4.46911 4.61401 4.68390 4.73724 4.83136 4.93209 4.97217 5.00792 5.10025 5.13819 5.26670 5.33423 5.40147 5.51843 5.53970 5.55702 5.62078 5.66596 5.69854 5.89608 5.91817 5.96949 6.01786 6.10804 6.17330 6.41913 6.50857 7.43523 7.75765 7.99727 8.46623 8.82546 9.28789 9.64290 10.71909 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.002532 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.475827 B =11056.238139 C =12123.644905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.114 4.114 4 C -0.038 4.038 5 H 0.122 0.878 6 C 0.461 3.539 7 O -0.504 6.504 8 O -0.321 6.321 9 C 0.057 3.943 10 C 0.448 3.552 11 O -0.557 6.557 12 N -0.579 5.579 13 C -0.308 4.308 14 H 0.122 0.878 15 C 0.045 3.955 16 N -0.875 5.875 17 Si 0.879 3.121 18 H -0.269 1.269 19 H -0.274 1.274 20 H -0.268 1.268 21 C -0.057 4.057 22 C -0.103 4.103 23 C -0.109 4.109 24 C -0.110 4.110 25 C -0.034 4.034 26 Cl -0.072 7.072 27 C -0.076 4.076 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.373 0.627 38 H 0.276 0.724 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.160 -20.756 -18.419 27.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.151 4.151 4 C -0.057 4.057 5 H 0.140 0.860 6 C 0.303 3.697 7 O -0.392 6.392 8 O -0.235 6.235 9 C -0.020 4.020 10 C 0.233 3.767 11 O -0.439 6.439 12 N -0.219 5.219 13 C -0.436 4.436 14 H 0.140 0.860 15 C -0.159 4.159 16 N -0.514 5.514 17 Si 0.705 3.295 18 H -0.194 1.194 19 H -0.199 1.199 20 H -0.194 1.194 21 C -0.057 4.057 22 C -0.121 4.121 23 C -0.127 4.127 24 C -0.129 4.129 25 C -0.061 4.061 26 Cl -0.043 7.043 27 C -0.094 4.094 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.206 0.794 38 H 0.086 0.914 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.842 -20.721 -18.108 27.531 hybrid contribution 1.075 1.226 -1.091 1.962 sum 1.917 -19.495 -19.200 27.429 Atomic orbital electron populations 1.21759 0.95419 1.01658 1.02213 1.21509 0.96280 0.95648 1.02353 1.21723 0.90308 0.98725 1.04385 1.20018 0.98414 0.89980 0.97286 0.86050 1.23501 0.77869 0.88650 0.79649 1.90685 1.35454 1.72493 1.40570 1.86550 1.68634 1.25891 1.42417 1.22765 0.99636 0.80139 0.99487 1.19181 0.86525 0.83147 0.87882 1.90603 1.40176 1.63742 1.49329 1.42040 1.46889 1.11484 1.21535 1.19420 1.30516 0.96595 0.97097 0.85995 1.25036 0.97713 0.96423 0.96697 1.69614 1.44247 1.13933 1.23598 0.86685 0.80874 0.80688 0.81302 1.19392 1.19936 1.19359 1.19227 0.97935 0.95673 0.92912 1.21136 0.96572 0.95440 0.98964 1.21043 0.99976 1.00208 0.91501 1.21063 0.97872 0.94757 0.99160 1.20855 1.01536 0.96662 0.87019 1.98375 1.92444 1.82808 1.30699 1.20826 0.99210 0.99224 0.90178 0.92249 0.92750 0.92707 0.91803 0.91487 0.89061 0.91093 0.89446 0.89441 0.79396 0.91379 0.85104 0.84906 0.85017 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.15 0.37 -0.82 16 2 C -0.12 -0.95 5.75 -26.74 -0.15 -1.10 16 3 C -0.11 -1.11 4.54 -26.73 -0.12 -1.23 16 4 C -0.04 -0.40 2.48 -92.92 -0.23 -0.63 16 5 H 0.12 1.06 7.88 -51.93 -0.41 0.65 16 6 C 0.46 6.66 7.13 36.01 0.26 6.92 16 7 O -0.50 -8.18 14.88 -18.75 -0.28 -8.46 16 8 O -0.32 -5.49 9.56 -45.92 -0.44 -5.93 16 9 C 0.06 1.01 5.94 36.01 0.21 1.23 16 10 C 0.45 10.22 7.86 -10.98 -0.09 10.14 16 11 O -0.56 -15.02 16.08 -14.11 -0.23 -15.25 16 12 N -0.58 -13.65 5.09 -10.96 -0.06 -13.70 16 13 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 14 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 15 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 16 N -0.87 -25.03 13.96 55.50 0.77 -24.25 16 17 Si 0.88 18.99 27.74 -169.99 -4.71 14.28 16 18 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 21 C -0.06 -0.57 3.37 -104.63 -0.35 -0.93 16 22 C -0.10 -0.85 9.67 -39.58 -0.38 -1.23 16 23 C -0.11 -0.82 10.04 -39.59 -0.40 -1.21 16 24 C -0.11 -0.93 9.83 -39.55 -0.39 -1.32 16 25 C -0.03 -0.35 6.32 -39.50 -0.25 -0.60 16 26 Cl -0.07 -0.72 28.96 -51.86 -1.50 -2.22 16 27 C -0.08 -0.83 7.67 -39.55 -0.30 -1.13 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.49 7.38 -51.93 -0.38 0.11 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.09 1.01 8.00 -51.93 -0.42 0.59 16 34 H 0.07 0.69 7.21 -51.93 -0.37 0.31 16 35 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 36 H 0.09 1.37 8.13 -51.93 -0.42 0.95 16 37 H 0.37 7.66 5.76 -40.82 -0.24 7.43 16 38 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.13 0.80 7.95 -52.48 -0.42 0.38 16 40 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 42 H 0.13 1.50 7.48 -52.49 -0.39 1.10 16 LS Contribution 375.47 15.07 5.66 5.66 Total: -1.00 -33.11 375.47 -8.42 -41.53 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -5.56 Total: 7.86 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -2.08 Total: 0.49 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.72 Total: -37.95 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.95 Total: -29.64 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.71 Total: 14.28 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.11 -8.42 -41.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859804635.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.168 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds