Wall clock time and date at job start Tue Mar 31 2020 22:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 108.58088 * 2 1 4 4 C 1.50696 * 109.47474 * 64.29494 * 3 2 1 5 5 O 1.21275 * 119.99981 * 359.65615 * 4 3 2 6 6 N 1.34776 * 120.00217 * 179.65468 * 4 3 2 7 7 C 1.37213 * 119.99966 * 6.71671 * 6 4 3 8 8 H 1.08001 * 119.99801 * 30.73758 * 7 6 4 9 9 C 1.38890 * 120.00261 * 210.73280 * 7 6 4 10 10 N 1.31414 * 119.99953 * 21.82518 * 9 7 6 11 11 Si 1.86798 * 120.00186 * 201.82611 * 9 7 6 12 12 H 1.48509 * 109.46914 * 90.00262 * 11 9 7 13 13 H 1.48501 * 109.47169 * 209.99851 * 11 9 7 14 14 H 1.48494 * 109.46930 * 330.00342 * 11 9 7 15 15 C 1.39429 * 120.00279 * 186.72014 * 6 4 3 16 16 C 1.39071 * 119.69356 * 16.80290 * 15 6 4 17 17 C 1.38380 * 119.09722 * 180.02562 * 16 15 6 18 18 C 1.38832 * 118.49178 * 0.02562 * 17 16 15 19 19 C 1.38145 * 119.31011 * 359.97438 * 18 17 16 20 20 N 1.31883 * 120.85274 * 0.02562 * 19 18 17 21 21 C 1.53197 * 108.64934 * 241.99841 * 2 1 3 22 22 C 1.55564 * 106.23915 * 266.62120 * 21 2 1 23 23 S 1.83902 * 99.64155 * 323.00762 * 22 21 2 24 24 O 1.42097 * 111.46329 * 144.08959 * 23 22 21 25 25 O 1.42097 * 111.46657 * 283.94165 * 23 22 21 26 26 N 1.46448 * 108.64232 * 117.99519 * 2 1 3 27 27 H 1.09003 * 109.47094 * 60.70244 * 1 2 3 28 28 H 1.09000 * 109.47257 * 180.70197 * 1 2 3 29 29 H 1.08997 * 109.47321 * 300.70388 * 1 2 3 30 30 H 1.09001 * 109.46976 * 304.29605 * 3 2 1 31 31 H 1.09003 * 109.46854 * 184.29661 * 3 2 1 32 32 H 0.97000 * 120.00544 * 184.38076 * 10 9 7 33 33 H 1.08003 * 120.45229 * 359.97438 * 16 15 6 34 34 H 1.08000 * 120.75335 * 179.97438 * 17 16 15 35 35 H 1.07994 * 120.34096 * 179.73024 * 18 17 16 36 36 H 1.07997 * 119.57459 * 179.97438 * 19 18 17 37 37 H 1.09004 * 110.10136 * 25.81105 * 21 2 1 38 38 H 1.08997 * 110.10435 * 147.42288 * 21 2 1 39 39 H 1.08996 * 111.37031 * 80.61374 * 22 21 2 40 40 H 1.09004 * 111.36421 * 205.35441 * 22 21 2 41 41 H 0.97006 * 126.08966 * 299.18306 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0175 1.4502 0.0000 4 6 1.5935 2.1228 1.2801 5 8 0.9580 1.5051 2.1080 6 7 1.9205 3.4108 1.5051 7 6 2.5173 4.1500 0.5151 8 1 2.2987 3.9405 -0.5216 9 6 3.4026 5.1677 0.8462 10 7 4.0006 5.1635 2.0164 11 14 3.7433 6.5424 -0.3718 12 1 2.7774 7.6489 -0.1521 13 1 5.1263 7.0463 -0.1754 14 1 3.5967 6.0249 -1.7559 15 6 1.6523 3.9921 2.7437 16 6 1.3817 3.1816 3.8410 17 6 1.1167 3.7716 5.0643 18 6 1.1310 5.1573 5.1482 19 6 1.4077 5.9005 4.0171 20 7 1.6567 5.3104 2.8642 21 6 2.0199 -0.6815 -1.2816 22 6 2.2424 -2.1782 -0.9207 23 16 2.8963 -1.9892 0.7877 24 8 2.4500 -3.0394 1.6345 25 8 4.2489 -1.5536 0.7816 26 7 1.9981 -0.6514 1.2253 27 1 -0.3633 0.5029 -0.8962 28 1 -0.3634 -1.0276 0.0126 29 1 -0.3634 0.5247 0.8836 30 1 1.5844 1.9791 -0.8490 31 1 3.1047 1.4680 -0.0770 32 1 4.5693 5.9062 2.2732 33 1 1.3776 2.1064 3.7395 34 1 0.9028 3.1679 5.9339 35 1 0.9241 5.6492 6.0871 36 1 1.4196 6.9787 4.0774 37 1 1.2666 -0.5930 -2.0644 38 1 2.9569 -0.2321 -1.6103 39 1 1.3038 -2.7323 -0.9276 40 1 2.9777 -2.6405 -1.5794 41 1 1.8186 -0.3585 2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277787822.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:02 Heat of formation + Delta-G solvation = -27.552144 kcal Electronic energy + Delta-G solvation = -28707.922464 eV Core-core repulsion = 24716.737704 eV Total energy + Delta-G solvation = -3991.184760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.23818 -38.84946 -37.28984 -36.82078 -35.71019 -35.03860 -31.94049 -31.62324 -31.16690 -30.66866 -29.23280 -27.33326 -25.19909 -24.37996 -22.55916 -22.13193 -20.41732 -19.40793 -19.35411 -18.02847 -17.27272 -16.48514 -16.37187 -15.64897 -15.42278 -15.40380 -14.97937 -14.79199 -14.46029 -14.28196 -14.14604 -13.47887 -13.26339 -13.15730 -13.04389 -12.76902 -12.44230 -12.25660 -12.07487 -11.95414 -11.82989 -11.71793 -11.52248 -11.44260 -11.20426 -11.07163 -11.02684 -10.80071 -10.63292 -10.48641 -10.43168 -9.58884 -9.13208 -9.06333 -8.65431 -8.50550 -8.08775 -7.17830 -6.42684 -4.19790 0.38814 2.13267 2.39001 2.80041 3.13266 3.22688 3.24601 3.58631 3.70540 3.90503 4.02211 4.19561 4.37113 4.56499 4.79658 4.90665 5.05090 5.25542 5.28555 5.37722 5.42568 5.60346 5.64049 5.65245 5.69947 5.81947 5.97669 6.00352 6.03074 6.25281 6.29401 6.35037 6.45678 6.67719 6.83667 6.98226 7.19536 7.31132 7.35178 7.64735 7.82747 8.23451 8.76954 8.96070 9.44967 9.58278 10.57897 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013578 B = 0.004469 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.641880 B = 6263.791363 C = 7364.011122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.157 3.843 3 C -0.123 4.123 4 C 0.488 3.512 5 O -0.570 6.570 6 N -0.366 5.366 7 C -0.377 4.377 8 H 0.100 0.900 9 C 0.085 3.915 10 N -0.822 5.822 11 Si 0.917 3.083 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.270 1.270 15 C 0.389 3.611 16 C -0.207 4.207 17 C -0.075 4.075 18 C -0.235 4.235 19 C 0.115 3.885 20 N -0.461 5.461 21 C -0.117 4.117 22 C -0.594 4.594 23 S 2.564 3.436 24 O -0.970 6.970 25 O -0.955 6.955 26 N -1.072 6.072 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.272 0.728 33 H 0.159 0.841 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.135 0.865 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.621 -7.842 -5.682 10.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.066 3.934 3 C -0.164 4.164 4 C 0.280 3.720 5 O -0.455 6.455 6 N -0.074 5.074 7 C -0.503 4.503 8 H 0.117 0.883 9 C -0.128 4.128 10 N -0.453 5.453 11 Si 0.743 3.257 12 H -0.199 1.199 13 H -0.212 1.212 14 H -0.195 1.195 15 C 0.160 3.840 16 C -0.229 4.229 17 C -0.102 4.102 18 C -0.257 4.257 19 C -0.045 4.045 20 N -0.174 5.174 21 C -0.156 4.156 22 C -0.724 4.724 23 S 2.658 3.342 24 O -0.960 6.960 25 O -0.944 6.944 26 N -0.844 5.844 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.176 0.824 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.152 0.848 37 H 0.129 0.871 38 H 0.118 0.882 39 H 0.157 0.843 40 H 0.154 0.846 41 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -3.809 -8.172 -5.495 10.558 hybrid contribution -0.274 0.984 0.125 1.029 sum -4.083 -7.188 -5.371 9.858 Atomic orbital electron populations 1.22424 0.93477 1.02106 1.04112 1.20304 0.96342 0.93157 0.83611 1.21887 1.03845 0.93272 0.97392 1.20316 0.81808 0.80726 0.89142 1.90282 1.43273 1.64273 1.47690 1.41175 1.47626 1.08133 1.10423 1.19304 1.25062 1.18307 0.87622 0.88284 1.25048 0.92661 0.98443 0.96621 1.69904 1.23946 1.29617 1.21812 0.86125 0.77426 0.81783 0.80322 1.19862 1.21173 1.19513 1.18361 0.91204 0.88182 0.86246 1.22517 1.05436 1.03046 0.91943 1.21191 0.97651 0.94462 0.96861 1.21676 1.09527 0.94940 0.99583 1.22210 0.95168 0.99062 0.88102 1.67163 1.13200 1.10805 1.26278 1.22527 1.05187 0.90171 0.97727 1.30761 1.13416 1.03986 1.24273 1.06469 0.75190 0.74708 0.77878 1.93581 1.82195 1.56681 1.63510 1.93661 1.34086 1.80707 1.85981 1.55042 1.71332 1.44585 1.13480 0.92356 0.92897 0.89008 0.88529 0.87869 0.91776 0.82420 0.86591 0.86957 0.84755 0.87123 0.88248 0.84349 0.84558 0.70984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 8.23 37.16 0.31 -1.72 16 2 C 0.16 2.06 0.83 -131.75 -0.11 1.95 16 3 C -0.12 -1.99 3.45 -27.89 -0.10 -2.08 16 4 C 0.49 10.12 6.95 -10.99 -0.08 10.05 16 5 O -0.57 -11.77 8.56 5.56 0.05 -11.73 16 6 N -0.37 -8.78 2.81 -60.71 -0.17 -8.95 16 7 C -0.38 -9.17 8.60 -14.90 -0.13 -9.30 16 8 H 0.10 2.20 6.90 -52.49 -0.36 1.84 16 9 C 0.08 2.11 4.24 -17.49 -0.07 2.04 16 10 N -0.82 -21.84 11.15 55.49 0.62 -21.22 16 11 Si 0.92 19.48 29.61 -169.99 -5.03 14.45 16 12 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 13 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 15 C 0.39 9.63 6.12 -154.64 -0.95 8.68 16 16 C -0.21 -4.67 8.84 -39.22 -0.35 -5.02 16 17 C -0.08 -1.48 10.17 -39.31 -0.40 -1.88 16 18 C -0.24 -4.44 10.11 -39.40 -0.40 -4.84 16 19 C 0.11 2.41 11.18 -17.56 -0.20 2.21 16 20 N -0.46 -11.31 7.14 -12.34 -0.09 -11.39 16 21 C -0.12 -1.09 5.56 -25.27 -0.14 -1.23 16 22 C -0.59 -5.02 7.66 38.52 0.29 -4.72 16 23 S 2.56 34.76 6.46 -107.50 -0.69 34.07 16 24 O -0.97 -15.96 18.14 -57.40 -1.04 -17.01 16 25 O -0.96 -16.48 18.14 -57.40 -1.04 -17.52 16 26 N -1.07 -15.92 5.61 0.59 0.00 -15.92 16 27 H 0.06 0.62 8.05 -51.93 -0.42 0.20 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 1.43 5.79 -51.93 -0.30 1.13 16 30 H 0.10 1.39 7.48 -51.93 -0.39 1.00 16 31 H 0.10 1.75 8.05 -51.93 -0.42 1.34 16 32 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.16 3.54 5.25 -52.60 -0.28 3.26 16 34 H 0.12 1.90 8.06 -52.49 -0.42 1.47 16 35 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.14 2.41 8.06 -52.49 -0.42 1.99 16 37 H 0.11 0.76 7.71 -51.93 -0.40 0.36 16 38 H 0.10 0.87 7.77 -51.93 -0.40 0.47 16 39 H 0.14 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.14 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.44 7.31 6.81 -40.18 -0.27 7.04 16 LS Contribution 341.58 15.07 5.15 5.15 Total: -1.00 -33.68 341.58 -9.47 -43.15 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -4.91 Total: 12.78 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -2.31 Total: -5.86 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.36 Total: -57.48 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -2.04 Total: -46.25 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Atomic # 16 Polarization: 34.76 SS G_CDS: -0.69 Total: 34.07 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.68 -9.47 -43.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277787822.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.597 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds