Wall clock time and date at job start Tue Mar 31 2020 22:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 108.58088 * 2 1 4 4 C 1.50696 * 109.47474 * 64.29494 * 3 2 1 5 5 O 1.21275 * 119.99981 * 359.65615 * 4 3 2 6 6 N 1.34776 * 120.00217 * 179.65468 * 4 3 2 7 7 C 1.37213 * 119.99966 * 6.71671 * 6 4 3 8 8 H 1.08001 * 119.99801 * 30.73758 * 7 6 4 9 9 C 1.38890 * 120.00261 * 210.73280 * 7 6 4 10 10 N 1.31414 * 119.99953 * 21.82518 * 9 7 6 11 11 Si 1.86798 * 120.00186 * 201.82611 * 9 7 6 12 12 H 1.48509 * 109.46914 * 90.00262 * 11 9 7 13 13 H 1.48501 * 109.47169 * 209.99851 * 11 9 7 14 14 H 1.48494 * 109.46930 * 330.00342 * 11 9 7 15 15 C 1.39429 * 120.00279 * 186.72014 * 6 4 3 16 16 C 1.39071 * 119.69356 * 16.80290 * 15 6 4 17 17 C 1.38380 * 119.09722 * 180.02562 * 16 15 6 18 18 C 1.38832 * 118.49178 * 0.02562 * 17 16 15 19 19 C 1.38145 * 119.31011 * 359.97438 * 18 17 16 20 20 N 1.31883 * 120.85274 * 0.02562 * 19 18 17 21 21 C 1.53197 * 108.64934 * 241.99841 * 2 1 3 22 22 C 1.55564 * 106.23915 * 266.62120 * 21 2 1 23 23 S 1.83902 * 99.64155 * 323.00762 * 22 21 2 24 24 O 1.42097 * 111.46329 * 144.08959 * 23 22 21 25 25 O 1.42097 * 111.46657 * 283.94165 * 23 22 21 26 26 N 1.46448 * 108.64232 * 117.99519 * 2 1 3 27 27 H 1.09003 * 109.47094 * 60.70244 * 1 2 3 28 28 H 1.09000 * 109.47257 * 180.70197 * 1 2 3 29 29 H 1.08997 * 109.47321 * 300.70388 * 1 2 3 30 30 H 1.09001 * 109.46976 * 304.29605 * 3 2 1 31 31 H 1.09003 * 109.46854 * 184.29661 * 3 2 1 32 32 H 0.97000 * 120.00544 * 184.38076 * 10 9 7 33 33 H 1.08003 * 120.45229 * 359.97438 * 16 15 6 34 34 H 1.08000 * 120.75335 * 179.97438 * 17 16 15 35 35 H 1.07994 * 120.34096 * 179.73024 * 18 17 16 36 36 H 1.07997 * 119.57459 * 179.97438 * 19 18 17 37 37 H 1.09004 * 110.10136 * 25.81105 * 21 2 1 38 38 H 1.08997 * 110.10435 * 147.42288 * 21 2 1 39 39 H 1.08996 * 111.37031 * 80.61374 * 22 21 2 40 40 H 1.09004 * 111.36421 * 205.35441 * 22 21 2 41 41 H 0.97006 * 126.08966 * 299.18306 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0175 1.4502 0.0000 4 6 1.5935 2.1228 1.2801 5 8 0.9580 1.5051 2.1080 6 7 1.9205 3.4108 1.5051 7 6 2.5173 4.1500 0.5151 8 1 2.2987 3.9405 -0.5216 9 6 3.4026 5.1677 0.8462 10 7 4.0006 5.1635 2.0164 11 14 3.7433 6.5424 -0.3718 12 1 2.7774 7.6489 -0.1521 13 1 5.1263 7.0463 -0.1754 14 1 3.5967 6.0249 -1.7559 15 6 1.6523 3.9921 2.7437 16 6 1.3817 3.1816 3.8410 17 6 1.1167 3.7716 5.0643 18 6 1.1310 5.1573 5.1482 19 6 1.4077 5.9005 4.0171 20 7 1.6567 5.3104 2.8642 21 6 2.0199 -0.6815 -1.2816 22 6 2.2424 -2.1782 -0.9207 23 16 2.8963 -1.9892 0.7877 24 8 2.4500 -3.0394 1.6345 25 8 4.2489 -1.5536 0.7816 26 7 1.9981 -0.6514 1.2253 27 1 -0.3633 0.5029 -0.8962 28 1 -0.3634 -1.0276 0.0126 29 1 -0.3634 0.5247 0.8836 30 1 1.5844 1.9791 -0.8490 31 1 3.1047 1.4680 -0.0770 32 1 4.5693 5.9062 2.2732 33 1 1.3776 2.1064 3.7395 34 1 0.9028 3.1679 5.9339 35 1 0.9241 5.6492 6.0871 36 1 1.4196 6.9787 4.0774 37 1 1.2666 -0.5930 -2.0644 38 1 2.9569 -0.2321 -1.6103 39 1 1.3038 -2.7323 -0.9276 40 1 2.9777 -2.6405 -1.5794 41 1 1.8186 -0.3585 2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277787822.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:01 Heat of formation + Delta-G solvation = -52.465541 kcal Electronic energy + Delta-G solvation = -28709.002789 eV Core-core repulsion = 24716.737704 eV Total energy + Delta-G solvation = -3992.265086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.78930 -40.24101 -38.61718 -37.99279 -36.88083 -36.69356 -33.69130 -32.83115 -32.57291 -31.98690 -30.62292 -28.55029 -26.98810 -25.33206 -24.15004 -23.68022 -21.57983 -20.95934 -20.42861 -19.65794 -18.42462 -17.98517 -17.40434 -17.12809 -16.97807 -16.71144 -16.64385 -16.13071 -15.80137 -15.66838 -15.46423 -14.90810 -14.60266 -14.49657 -14.06559 -13.99058 -13.76958 -13.55868 -13.39112 -13.16866 -13.10748 -13.01818 -12.99118 -12.82648 -12.71148 -12.53737 -12.33025 -12.08325 -12.00680 -11.71456 -11.37220 -11.25893 -10.78502 -10.33349 -10.23409 -10.12338 -9.79154 -8.91901 -8.23467 -6.04743 -0.60021 0.50585 0.75534 1.44511 1.51700 1.58104 1.76258 1.98182 2.28385 2.63653 2.77241 3.12361 3.14798 3.44316 3.55435 3.63986 3.83877 4.05442 4.09420 4.13088 4.25138 4.36913 4.54339 4.57011 4.63943 4.67796 4.79030 4.80002 4.92387 4.95808 4.99733 5.12648 5.20399 5.35101 5.38093 5.49267 5.57463 5.64377 5.79745 6.10217 6.33786 6.49991 7.06430 7.19891 7.75961 7.88276 8.75829 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013578 B = 0.004469 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.641880 B = 6263.791363 C = 7364.011122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.152 3.848 3 C -0.120 4.120 4 C 0.480 3.520 5 O -0.573 6.573 6 N -0.391 5.391 7 C -0.385 4.385 8 H 0.115 0.885 9 C 0.041 3.959 10 N -0.862 5.862 11 Si 0.976 3.024 12 H -0.282 1.282 13 H -0.292 1.292 14 H -0.249 1.249 15 C 0.359 3.641 16 C -0.234 4.234 17 C -0.074 4.074 18 C -0.223 4.223 19 C 0.096 3.904 20 N -0.493 5.493 21 C -0.117 4.117 22 C -0.542 4.542 23 S 2.545 3.455 24 O -1.010 7.010 25 O -1.006 7.006 26 N -1.087 6.087 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.119 0.881 31 H 0.090 0.910 32 H 0.265 0.735 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.155 0.845 36 H 0.159 0.841 37 H 0.153 0.847 38 H 0.107 0.893 39 H 0.171 0.829 40 H 0.175 0.825 41 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.979 -8.523 -8.037 13.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.062 3.938 3 C -0.161 4.161 4 C 0.273 3.727 5 O -0.458 6.458 6 N -0.101 5.101 7 C -0.510 4.510 8 H 0.132 0.868 9 C -0.167 4.167 10 N -0.496 5.496 11 Si 0.801 3.199 12 H -0.208 1.208 13 H -0.218 1.218 14 H -0.172 1.172 15 C 0.130 3.870 16 C -0.256 4.256 17 C -0.100 4.100 18 C -0.244 4.244 19 C -0.063 4.063 20 N -0.207 5.207 21 C -0.156 4.156 22 C -0.678 4.678 23 S 2.645 3.355 24 O -1.000 7.000 25 O -0.996 6.996 26 N -0.855 5.855 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.137 0.863 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.173 0.827 36 H 0.176 0.824 37 H 0.171 0.829 38 H 0.125 0.875 39 H 0.189 0.811 40 H 0.193 0.807 41 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -5.159 -8.880 -7.830 12.914 hybrid contribution 0.025 1.150 0.919 1.472 sum -5.134 -7.730 -6.910 11.570 Atomic orbital electron populations 1.22377 0.92761 1.03257 1.03412 1.20607 0.96966 0.91521 0.84710 1.21999 1.03112 0.95427 0.95551 1.21231 0.80788 0.80106 0.90601 1.90279 1.42980 1.64169 1.48327 1.41522 1.48713 1.09304 1.10535 1.19712 1.24439 1.18362 0.88503 0.86769 1.25842 0.92528 1.00395 0.97893 1.70040 1.25531 1.30004 1.23977 0.85212 0.76387 0.78839 0.79487 1.20791 1.21785 1.17198 1.18749 0.92318 0.88768 0.87170 1.22602 1.07263 1.02703 0.93070 1.21628 0.96124 0.95449 0.96793 1.22075 1.07242 0.94547 1.00547 1.22796 0.94843 1.00541 0.88148 1.67126 1.14343 1.11048 1.28222 1.22695 1.06939 0.89795 0.96141 1.30561 1.15298 1.04407 1.17523 1.06835 0.74311 0.73715 0.80631 1.93523 1.82292 1.57308 1.66854 1.93595 1.37054 1.81167 1.87756 1.55134 1.71257 1.45535 1.13596 0.89950 0.90702 0.92854 0.86342 0.89132 0.92581 0.83348 0.83190 0.82692 0.82381 0.82879 0.87488 0.81147 0.80714 0.72614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 8.23 71.98 0.59 -3.00 16 2 C 0.15 3.71 0.83 3.68 0.00 3.71 16 3 C -0.12 -3.81 3.45 29.84 0.10 -3.71 16 4 C 0.48 20.50 6.95 87.66 0.61 21.11 16 5 O -0.57 -24.73 8.56 -3.01 -0.03 -24.76 16 6 N -0.39 -19.41 2.81 -464.38 -1.30 -20.71 16 7 C -0.38 -19.01 8.60 84.01 0.72 -18.29 16 8 H 0.11 5.04 6.90 -2.91 -0.02 5.02 16 9 C 0.04 2.10 4.24 84.91 0.36 2.46 16 10 N -0.86 -47.56 11.15 21.65 0.24 -47.32 16 11 Si 0.98 40.40 29.61 68.60 2.03 42.43 16 12 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 13 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 14 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 15 C 0.36 18.39 6.12 132.91 0.81 19.20 16 16 C -0.23 -10.92 8.84 22.50 0.20 -10.72 16 17 C -0.07 -2.86 10.17 22.45 0.23 -2.64 16 18 C -0.22 -8.07 10.11 22.39 0.23 -7.84 16 19 C 0.10 4.03 11.18 84.66 0.95 4.98 16 20 N -0.49 -24.80 7.14 -192.95 -1.38 -26.18 16 21 C -0.12 -1.62 5.56 31.54 0.18 -1.44 16 22 C -0.54 -6.47 7.66 72.87 0.56 -5.91 16 23 S 2.54 68.02 6.46 -56.49 -0.37 67.65 16 24 O -1.01 -33.76 18.14 -127.79 -2.32 -36.08 16 25 O -1.01 -35.74 18.14 -127.79 -2.32 -38.06 16 26 N -1.09 -32.60 5.61 -152.04 -0.85 -33.46 16 27 H 0.08 1.44 8.05 -2.39 -0.02 1.42 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.05 1.64 5.79 -2.39 -0.01 1.62 16 30 H 0.12 3.18 7.48 -2.39 -0.02 3.16 16 31 H 0.09 3.11 8.05 -2.39 -0.02 3.09 16 32 H 0.26 14.15 8.31 -92.71 -0.77 13.37 16 33 H 0.15 7.04 5.25 -4.73 -0.02 7.02 16 34 H 0.15 4.64 8.06 -2.91 -0.02 4.61 16 35 H 0.16 4.23 8.06 -2.91 -0.02 4.20 16 36 H 0.16 5.58 8.06 -2.91 -0.02 5.55 16 37 H 0.15 1.00 7.71 -2.39 -0.02 0.98 16 38 H 0.11 1.43 7.77 -2.39 -0.02 1.41 16 39 H 0.17 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.18 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.43 15.12 6.81 -93.11 -0.63 14.48 16 Total: -1.00 -80.09 341.58 -0.32 -80.41 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: 0.44 Total: 38.16 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 5.54 Total: -2.08 kcal Atomic # 7 Polarization: -124.37 SS G_CDS: -3.29 Total: -127.67 kcal Atomic # 8 Polarization: -94.24 SS G_CDS: -4.66 Total: -98.90 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Atomic # 16 Polarization: 68.02 SS G_CDS: -0.37 Total: 67.65 kcal Total: -80.09 -0.32 -80.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277787822.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.943 kcal (2) G-P(sol) polarization free energy of solvation -80.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds