Wall clock time and date at job start Tue Mar 31 2020 22:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41264 * 126.70433 * 2 1 4 4 C 1.36824 * 103.84478 * 179.97438 * 3 2 1 5 5 C 1.47518 * 126.94354 * 179.97438 * 4 3 2 6 6 O 1.21578 * 119.99571 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99887 * 179.97438 * 5 4 3 8 8 C 1.46506 * 119.99637 * 179.97438 * 7 5 4 9 9 H 1.08993 * 112.90706 * 336.25749 * 8 7 5 10 10 C 1.53779 * 113.61020 * 107.50492 * 8 7 5 11 11 C 1.53780 * 87.07878 * 139.98065 * 10 8 7 12 12 H 1.09005 * 113.69125 * 89.12621 * 11 10 8 13 13 N 1.46506 * 113.61609 * 220.01927 * 11 10 8 14 14 C 1.34780 * 119.99719 * 252.49764 * 13 11 10 15 15 O 1.21279 * 120.00426 * 0.02562 * 14 13 11 16 16 C 1.50703 * 119.99340 * 179.97438 * 14 13 11 17 17 S 1.81000 * 109.46640 * 180.02562 * 16 14 13 18 18 C 1.76204 * 100.00077 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99794 * 359.97438 * 18 17 16 20 20 C 1.38797 * 119.99960 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00292 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99660 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99524 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99704 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99697 * 22 20 18 26 26 C 1.53775 * 113.61341 * 205.00037 * 8 7 5 27 27 O 1.34639 * 106.11349 * 0.23704 * 4 3 2 28 28 N 1.20888 * 111.46982 * 359.57035 * 27 4 3 29 29 H 1.09003 * 109.46887 * 90.00417 * 1 2 3 30 30 H 1.08999 * 109.46990 * 209.99889 * 1 2 3 31 31 H 1.09001 * 109.47248 * 330.00636 * 1 2 3 32 32 H 1.07999 * 128.07780 * 359.96350 * 3 2 1 33 33 H 0.97001 * 120.00322 * 0.02562 * 7 5 4 34 34 H 1.09007 * 113.61552 * 25.43394 * 10 8 7 35 35 H 1.09000 * 113.61603 * 254.52965 * 10 8 7 36 36 H 0.96995 * 120.00144 * 72.49426 * 13 11 10 37 37 H 1.08997 * 109.46997 * 60.00690 * 16 14 13 38 38 H 1.08995 * 109.47631 * 299.99616 * 16 14 13 39 39 H 0.96998 * 119.99330 * 0.02562 * 21 20 18 40 40 H 1.09004 * 113.61358 * 105.47025 * 26 8 7 41 41 H 1.09001 * 113.69126 * 334.58574 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6121 0.6010 0.0006 5 6 4.8871 1.3430 0.0003 6 8 4.8828 2.5588 -0.0010 7 7 6.0566 0.6731 0.0015 8 6 7.3228 1.4101 0.0007 9 1 7.2273 2.4172 -0.4050 10 6 8.0680 1.3555 1.3447 11 6 9.3641 1.2077 0.5304 12 1 9.8279 2.1589 0.2689 13 7 10.3130 0.2513 1.1059 14 6 11.4389 0.6937 1.7003 15 8 11.6662 1.8836 1.7592 16 6 12.4146 -0.2902 2.2928 17 16 13.8129 0.6060 3.0123 18 6 14.7675 -0.7478 3.6130 19 1 14.4154 -1.7596 3.4761 20 6 15.9713 -0.5139 4.2630 21 7 16.4002 0.7194 4.4303 22 14 16.9829 -1.9491 4.9004 23 1 16.5763 -2.2609 6.2943 24 1 18.4235 -1.5899 4.8737 25 1 16.7530 -3.1375 4.0402 26 6 8.4976 0.6154 -0.5934 27 8 3.4539 -0.7360 -0.0045 28 7 2.2848 -1.0433 0.0006 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 2.0678 2.1747 -0.0005 33 1 6.0599 -0.2969 0.0022 34 1 7.8257 0.4771 1.9430 35 1 8.0127 2.2842 1.9127 36 1 10.1310 -0.7003 1.0592 37 1 12.7749 -0.9597 1.5117 38 1 11.9179 -0.8717 3.0694 39 1 15.8747 1.4646 4.0996 40 1 8.7890 0.9465 -1.5902 41 1 8.3739 -0.4655 -0.5259 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284075478.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:03 Heat of formation + Delta-G solvation = 2.633598 kcal Electronic energy + Delta-G solvation = -25040.063694 eV Core-core repulsion = 21050.187887 eV Total energy + Delta-G solvation = -3989.875808 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.55658 -40.75935 -39.54280 -38.10653 -35.52460 -34.51288 -33.06642 -32.54556 -32.22883 -29.34790 -29.25143 -26.13939 -25.75657 -24.85489 -23.63495 -23.10652 -20.95338 -20.50093 -20.32685 -18.79961 -18.34458 -18.32214 -17.31018 -16.70088 -16.62345 -15.82684 -15.46595 -15.34211 -14.89281 -14.86286 -14.38314 -14.06871 -13.96735 -13.85390 -13.73277 -13.35841 -13.34025 -13.09156 -12.91971 -12.42156 -12.17879 -12.05373 -11.99064 -11.64054 -11.53680 -11.24148 -10.92318 -10.79255 -10.67434 -10.29221 -10.20429 -9.65192 -9.61334 -9.52450 -9.05156 -8.98316 -8.24527 -6.69308 -6.63987 -4.02166 0.24800 1.47847 2.02830 2.43036 2.61343 2.90370 2.92700 3.33681 3.38002 3.49430 3.52401 3.58083 3.87368 4.03080 4.16388 4.23295 4.35983 4.46051 4.54850 4.54864 4.75735 4.88478 4.97526 5.03511 5.14078 5.20770 5.22038 5.25963 5.28769 5.42760 5.46000 5.47988 5.70452 5.72201 5.74345 5.97563 6.02747 6.49971 6.75346 7.38947 7.55291 7.55517 7.90411 8.45263 8.48445 9.25222 10.80029 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.028614 B = 0.001583 C = 0.001532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.317974 B =17680.879766 C =18266.931065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.011 3.989 3 C -0.149 4.149 4 C -0.085 4.085 5 C 0.608 3.392 6 O -0.508 6.508 7 N -0.701 5.701 8 C 0.123 3.877 9 H 0.125 0.875 10 C -0.165 4.165 11 C 0.131 3.869 12 H 0.121 0.879 13 N -0.726 5.726 14 C 0.532 3.468 15 O -0.516 6.516 16 C -0.132 4.132 17 S -0.116 6.116 18 C -0.608 4.608 19 H 0.066 0.934 20 C 0.036 3.964 21 N -0.884 5.884 22 Si 1.087 2.913 23 H -0.284 1.284 24 H -0.280 1.280 25 H -0.287 1.287 26 C -0.152 4.152 27 O 0.117 5.883 28 N -0.344 5.344 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.185 0.815 33 H 0.409 0.591 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.400 0.600 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.278 0.722 40 H 0.086 0.914 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.870 -3.554 -12.336 33.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.147 4.147 3 C -0.171 4.171 4 C -0.151 4.151 5 C 0.391 3.609 6 O -0.383 6.383 7 N -0.352 5.352 8 C 0.019 3.981 9 H 0.143 0.857 10 C -0.205 4.205 11 C 0.024 3.976 12 H 0.139 0.861 13 N -0.379 5.379 14 C 0.318 3.682 15 O -0.389 6.389 16 C -0.283 4.283 17 S 0.110 5.890 18 C -0.756 4.756 19 H 0.084 0.916 20 C -0.175 4.175 21 N -0.518 5.518 22 Si 0.913 3.087 23 H -0.211 1.211 24 H -0.205 1.205 25 H -0.213 1.213 26 C -0.191 4.191 27 O 0.044 5.956 28 N -0.045 5.045 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.202 0.798 33 H 0.244 0.756 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.234 0.766 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -29.300 -2.341 -11.449 31.544 hybrid contribution -1.922 -1.403 -0.826 2.519 sum -31.222 -3.744 -12.275 33.757 Atomic orbital electron populations 1.20236 0.85095 1.04323 1.03848 1.23705 0.99536 0.88214 1.03247 1.22912 0.89938 1.01867 1.02384 1.24243 0.97363 0.84110 1.09392 1.16540 0.81131 0.86227 0.77022 1.90902 1.86008 1.11829 1.49564 1.45845 1.05051 1.10684 1.73600 1.22482 0.80187 0.97597 0.97882 0.85693 1.24020 0.95378 1.03974 0.97143 1.22139 0.87579 0.94910 0.92955 0.86111 1.45893 1.21916 1.09699 1.60380 1.20339 0.81046 0.89717 0.77075 1.90706 1.75065 1.16904 1.56267 1.23325 1.00138 1.01483 1.03362 1.84838 1.17809 1.13064 1.73251 1.23732 1.11022 0.93454 1.47436 0.91570 1.26054 0.95193 1.02154 0.94097 1.70772 1.39997 0.99041 1.42006 0.83289 0.76013 0.73191 0.76198 1.21055 1.20490 1.21305 1.23773 0.94484 1.00972 0.99883 1.84977 1.21577 1.22049 1.67013 1.73758 0.89203 1.24280 1.17274 0.89741 0.90134 0.89542 0.79804 0.75566 0.89080 0.89972 0.76616 0.88905 0.88937 0.90949 0.89498 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.28 10.47 36.01 0.38 0.09 16 2 C 0.01 0.07 7.31 -82.16 -0.60 -0.53 16 3 C -0.15 -1.04 10.91 -38.94 -0.43 -1.47 16 4 C -0.08 -0.67 7.29 -36.31 -0.26 -0.93 16 5 C 0.61 5.26 7.82 -12.48 -0.10 5.16 16 6 O -0.51 -5.98 16.51 5.30 0.09 -5.90 16 7 N -0.70 -4.53 5.35 -54.07 -0.29 -4.82 16 8 C 0.12 0.88 4.24 -67.12 -0.28 0.60 16 9 H 0.13 1.01 7.46 -51.93 -0.39 0.63 16 10 C -0.16 -1.45 7.68 -25.92 -0.20 -1.65 16 11 C 0.13 1.28 4.24 -67.12 -0.28 1.00 16 12 H 0.12 1.42 7.47 -51.93 -0.39 1.03 16 13 N -0.73 -8.47 5.36 -53.01 -0.28 -8.76 16 14 C 0.53 9.32 7.85 -10.98 -0.09 9.24 16 15 O -0.52 -11.17 15.46 5.56 0.09 -11.08 16 16 C -0.13 -2.57 6.16 36.01 0.22 -2.35 16 17 S -0.12 -3.08 19.60 -107.50 -2.11 -5.19 16 18 C -0.61 -17.39 9.50 30.94 0.29 -17.09 16 19 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 20 C 0.04 1.03 5.49 -17.43 -0.10 0.93 16 21 N -0.88 -27.38 13.67 55.49 0.76 -26.63 16 22 Si 1.09 24.80 29.92 -169.99 -5.09 19.71 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 25 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 26 C -0.15 -0.95 7.58 -25.92 -0.20 -1.14 16 27 O 0.12 0.94 11.04 15.56 0.17 1.11 16 28 N -0.34 -3.02 12.04 33.52 0.40 -2.62 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.18 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.41 1.74 8.56 -40.82 -0.35 1.39 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.40 3.43 8.73 -40.82 -0.36 3.07 16 37 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 38 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 39 H 0.28 8.80 7.12 -40.82 -0.29 8.51 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.43 8.10 -51.93 -0.42 0.01 16 LS Contribution 375.25 15.07 5.65 5.65 Total: -1.00 -37.36 375.25 -7.45 -44.81 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.20 Total: 1.83 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -1.64 Total: -8.13 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.59 Total: -42.82 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.35 Total: -15.87 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.09 Total: 19.71 kcal Atomic # 16 Polarization: -3.08 SS G_CDS: -2.11 Total: -5.19 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.36 -7.45 -44.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284075478.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.444 kcal (2) G-P(sol) polarization free energy of solvation -37.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds