Wall clock time and date at job start Tue Mar 31 2020 22:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41252 * 128.07949 * 2 1 4 4 N 1.30125 * 106.59383 * 179.97438 * 3 2 1 5 5 O 1.20891 * 111.98119 * 359.70241 * 4 3 2 6 6 C 1.34643 * 111.46357 * 0.48639 * 5 4 3 7 7 C 1.47516 * 126.94132 * 179.79075 * 6 5 4 8 8 O 1.21579 * 120.00003 * 179.68984 * 7 6 5 9 9 N 1.34777 * 120.00019 * 359.68705 * 7 6 5 10 10 C 1.47071 * 136.05521 * 359.63622 * 9 7 6 11 11 C 1.53759 * 87.88734 * 152.95984 * 10 9 7 12 12 C 1.52996 * 114.08857 * 139.77745 * 11 10 9 13 13 N 1.46498 * 109.47247 * 91.55744 * 12 11 10 14 14 C 1.34777 * 120.00294 * 179.97438 * 13 12 11 15 15 O 1.21281 * 119.99700 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00240 * 179.97438 * 14 13 12 17 17 S 1.81001 * 109.47222 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00077 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00181 * 359.97438 * 18 17 16 20 20 C 1.38802 * 120.00142 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00017 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 119.99721 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47340 * 90.00439 * 22 20 18 24 24 H 1.48503 * 109.46950 * 210.00177 * 22 20 18 25 25 H 1.48503 * 109.47239 * 330.00113 * 22 20 18 26 26 C 1.47060 * 136.05949 * 179.97438 * 9 7 6 27 27 H 1.08998 * 109.47215 * 270.04482 * 1 2 3 28 28 H 1.08996 * 109.46767 * 30.04770 * 1 2 3 29 29 H 1.08999 * 109.46849 * 150.04353 * 1 2 3 30 30 H 1.08006 * 126.70473 * 359.97438 * 3 2 1 31 31 H 1.08999 * 113.46214 * 267.68554 * 10 9 7 32 32 H 1.08997 * 113.47159 * 38.12653 * 10 9 7 33 33 H 1.08996 * 114.56916 * 272.66125 * 11 10 9 34 34 H 1.09000 * 109.47281 * 211.55789 * 12 11 10 35 35 H 1.09003 * 109.47025 * 331.55789 * 12 11 10 36 36 H 0.97005 * 120.00282 * 0.02562 * 13 12 11 37 37 H 1.09000 * 109.47077 * 300.00637 * 16 14 13 38 38 H 1.09003 * 109.47065 * 60.00537 * 16 14 13 39 39 H 0.96992 * 119.99927 * 180.02562 * 21 20 18 40 40 H 1.09004 * 113.46886 * 321.86763 * 26 9 7 41 41 H 1.08996 * 113.46900 * 92.30403 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1119 0.0000 4 7 3.5891 0.6353 0.0006 5 8 3.5995 -0.5736 0.0067 6 6 2.3508 -1.0771 0.0006 7 6 1.9695 -2.5021 0.0008 8 8 0.7952 -2.8172 0.0005 9 7 2.9228 -3.4548 0.0013 10 6 4.3933 -3.4814 -0.0047 11 6 4.3148 -4.8455 0.7006 12 6 5.3371 -5.8674 0.1994 13 7 6.5531 -5.7806 1.0118 14 6 7.5970 -6.5923 0.7514 15 8 7.5298 -7.3944 -0.1558 16 6 8.8480 -6.5026 1.5868 17 16 10.0575 -7.7117 0.9939 18 6 11.3796 -7.3972 2.1153 19 1 11.2741 -6.6366 2.8749 20 6 12.5571 -8.1261 2.0220 21 7 13.5450 -7.8908 2.8595 22 14 12.7398 -9.4410 0.7079 23 1 13.3090 -8.8354 -0.5226 24 1 13.6470 -10.5091 1.1992 25 1 11.4086 -10.0241 0.4025 26 6 2.9505 -4.9252 0.0021 27 1 -0.3633 0.0008 1.0276 28 1 -0.3633 0.8895 -0.5146 29 1 -0.3633 -0.8904 -0.5132 30 1 2.0948 2.1541 -0.0004 31 1 4.8222 -3.5344 -1.0053 32 1 4.8441 -2.7000 0.6070 33 1 4.2575 -4.7909 1.7877 34 1 4.9176 -6.8703 0.2793 35 1 5.5803 -5.6572 -0.8422 36 1 6.6067 -5.1393 1.7377 37 1 9.2676 -5.4998 1.5061 38 1 8.6051 -6.7121 2.6285 39 1 14.3679 -8.4000 2.7940 40 1 2.1723 -5.3737 0.6198 41 1 2.9988 -5.3590 -0.9966 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284952926.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:51 Heat of formation + Delta-G solvation = 32.242497 kcal Electronic energy + Delta-G solvation = -25415.246263 eV Core-core repulsion = 21426.654394 eV Total energy + Delta-G solvation = -3988.591870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.51634 -41.05924 -39.33873 -38.51555 -35.28432 -34.67308 -32.95761 -32.45248 -31.29239 -29.60610 -28.63623 -26.63924 -26.23611 -25.58330 -24.09282 -22.65639 -21.36987 -20.64990 -20.07568 -18.48302 -18.28176 -17.89249 -16.90975 -16.77265 -16.47101 -16.17986 -15.51453 -15.46818 -14.98040 -14.79767 -14.58833 -14.05336 -13.87561 -13.74811 -13.69458 -13.49521 -13.26031 -13.18692 -13.07914 -12.81221 -12.70688 -11.99715 -11.85084 -11.78442 -11.28568 -11.15772 -11.01965 -10.89822 -10.73399 -10.61149 -10.02523 -9.87454 -9.60156 -9.34284 -9.08536 -9.00487 -8.52256 -6.93730 -6.30202 -4.02247 0.26950 1.55642 1.88199 2.41388 2.50787 2.71909 2.91614 3.21744 3.32284 3.49161 3.55037 3.64204 3.75415 3.84317 4.12676 4.30869 4.31968 4.43173 4.48610 4.64533 4.66298 4.75215 4.86803 4.98843 5.05917 5.08902 5.10380 5.18182 5.19879 5.22525 5.32706 5.39013 5.50615 5.66690 5.73217 5.75250 5.98834 6.41937 6.94114 7.27700 7.51832 7.59333 7.92772 8.40292 8.42213 9.15918 10.78993 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025089 B = 0.001784 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.754329 B =15690.928523 C =16499.887020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.118 4.118 3 C -0.015 4.015 4 N -0.340 5.340 5 O 0.120 5.880 6 C -0.091 4.091 7 C 0.636 3.364 8 O -0.510 6.510 9 N -0.638 5.638 10 C 0.101 3.899 11 C -0.136 4.136 12 C 0.134 3.866 13 N -0.737 5.737 14 C 0.532 3.468 15 O -0.519 6.519 16 C -0.125 4.125 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.119 3.881 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.200 0.800 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.401 0.599 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.271 0.729 40 H 0.089 0.911 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.107 15.774 -4.721 31.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C -0.193 4.193 4 N -0.038 5.038 5 O 0.046 5.954 6 C -0.157 4.157 7 C 0.423 3.577 8 O -0.386 6.386 9 N -0.373 5.373 10 C -0.022 4.022 11 C -0.156 4.156 12 C 0.009 3.991 13 N -0.392 5.392 14 C 0.317 3.683 15 O -0.393 6.393 16 C -0.275 4.275 17 S 0.084 5.916 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.003 4.003 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.217 0.783 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.135 0.865 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.235 0.765 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.107 0.893 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -26.639 14.962 -6.187 31.173 hybrid contribution -0.185 0.872 0.979 1.324 sum -26.824 15.835 -5.207 31.581 Atomic orbital electron populations 1.20351 0.86191 1.04261 1.03596 1.21674 0.99116 0.90230 1.01249 1.25040 0.87637 1.02205 1.04397 1.73802 1.23106 0.91210 1.15666 1.85008 1.28037 1.15473 1.66889 1.23851 0.84862 0.95706 1.11243 1.15845 0.84124 0.80707 0.77011 1.90865 1.16461 1.80316 1.50974 1.49365 1.08114 1.07871 1.71936 1.23447 0.79224 0.97595 1.01910 1.23298 0.95343 0.95220 1.01693 1.21142 0.83811 0.98693 0.95441 1.45928 1.15236 1.41160 1.36880 1.20282 0.83883 0.79823 0.84263 1.90710 1.81612 1.36167 1.30799 1.23281 0.96208 1.05542 1.02508 1.84794 1.12245 1.47222 1.47317 1.22315 0.99813 1.25955 1.18875 0.89366 1.24718 0.94461 0.96498 0.95651 1.69935 1.04963 1.40588 1.36153 0.86732 0.80897 0.82109 0.82092 1.19213 1.19952 1.15918 1.23023 0.96543 0.79046 1.01682 0.89983 0.90558 0.89189 0.78316 0.88347 0.89211 0.86538 0.90526 0.90769 0.76489 0.88420 0.88410 0.91933 0.89271 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.49 9.96 36.01 0.36 -0.13 16 2 C -0.12 -0.90 6.37 -103.99 -0.66 -1.56 16 3 C -0.02 -0.11 12.14 -17.13 -0.21 -0.32 16 4 N -0.34 -3.21 12.04 30.46 0.37 -2.84 16 5 O 0.12 1.11 9.97 15.55 0.15 1.26 16 6 C -0.09 -0.81 7.25 -36.31 -0.26 -1.08 16 7 C 0.64 6.10 8.07 -12.48 -0.10 5.99 16 8 O -0.51 -6.04 15.89 5.30 0.08 -5.95 16 9 N -0.64 -4.79 3.69 -186.32 -0.69 -5.48 16 10 C 0.10 0.57 7.46 -8.37 -0.06 0.51 16 11 C -0.14 -0.71 4.12 -89.98 -0.37 -1.08 16 12 C 0.13 1.05 5.59 -4.04 -0.02 1.03 16 13 N -0.74 -7.54 5.56 -60.30 -0.33 -7.87 16 14 C 0.53 8.51 7.85 -10.99 -0.09 8.42 16 15 O -0.52 -10.38 15.86 5.56 0.09 -10.29 16 16 C -0.12 -2.26 6.16 36.00 0.22 -2.04 16 17 S -0.14 -3.50 18.55 -107.50 -1.99 -5.49 16 18 C -0.52 -14.76 10.04 30.94 0.31 -14.45 16 19 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 20 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 21 N -0.88 -26.25 13.97 55.49 0.78 -25.48 16 22 Si 0.86 21.48 27.74 -169.99 -4.71 16.76 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 26 C 0.12 0.68 8.19 -8.52 -0.07 0.61 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.64 6.73 -51.93 -0.35 0.29 16 30 H 0.20 0.71 8.06 -52.48 -0.42 0.29 16 31 H 0.10 0.51 7.87 -51.93 -0.41 0.10 16 32 H 0.09 0.49 7.56 -51.93 -0.39 0.09 16 33 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.62 7.80 -51.93 -0.40 0.22 16 36 H 0.40 2.98 8.47 -40.82 -0.35 2.64 16 37 H 0.10 1.64 8.14 -51.92 -0.42 1.21 16 38 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 39 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.46 8.10 -51.93 -0.42 0.03 16 LS Contribution 370.81 15.07 5.59 5.59 Total: -1.00 -36.47 370.81 -7.01 -43.48 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -5.28 Total: -2.25 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -1.05 Total: -1.43 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.12 Total: -41.67 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.33 Total: -14.98 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.71 Total: 16.76 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.47 -7.01 -43.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284952926.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.720 kcal (2) G-P(sol) polarization free energy of solvation -36.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds