Wall clock time and date at job start Tue Mar 31 2020 22:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41252 * 128.07949 * 2 1 4 4 N 1.30125 * 106.59383 * 179.97438 * 3 2 1 5 5 O 1.20891 * 111.98119 * 359.70241 * 4 3 2 6 6 C 1.34643 * 111.46357 * 0.48639 * 5 4 3 7 7 C 1.47516 * 126.94132 * 179.79075 * 6 5 4 8 8 O 1.21579 * 120.00003 * 179.68984 * 7 6 5 9 9 N 1.34777 * 120.00019 * 359.68705 * 7 6 5 10 10 C 1.47071 * 136.05521 * 359.63622 * 9 7 6 11 11 C 1.53759 * 87.88734 * 152.95984 * 10 9 7 12 12 C 1.52996 * 114.08857 * 139.77745 * 11 10 9 13 13 N 1.46498 * 109.47247 * 91.55744 * 12 11 10 14 14 C 1.34777 * 120.00294 * 179.97438 * 13 12 11 15 15 O 1.21281 * 119.99700 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00240 * 179.97438 * 14 13 12 17 17 S 1.81001 * 109.47222 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00077 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00181 * 359.97438 * 18 17 16 20 20 C 1.38802 * 120.00142 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00017 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 119.99721 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47340 * 90.00439 * 22 20 18 24 24 H 1.48503 * 109.46950 * 210.00177 * 22 20 18 25 25 H 1.48503 * 109.47239 * 330.00113 * 22 20 18 26 26 C 1.47060 * 136.05949 * 179.97438 * 9 7 6 27 27 H 1.08998 * 109.47215 * 270.04482 * 1 2 3 28 28 H 1.08996 * 109.46767 * 30.04770 * 1 2 3 29 29 H 1.08999 * 109.46849 * 150.04353 * 1 2 3 30 30 H 1.08006 * 126.70473 * 359.97438 * 3 2 1 31 31 H 1.08999 * 113.46214 * 267.68554 * 10 9 7 32 32 H 1.08997 * 113.47159 * 38.12653 * 10 9 7 33 33 H 1.08996 * 114.56916 * 272.66125 * 11 10 9 34 34 H 1.09000 * 109.47281 * 211.55789 * 12 11 10 35 35 H 1.09003 * 109.47025 * 331.55789 * 12 11 10 36 36 H 0.97005 * 120.00282 * 0.02562 * 13 12 11 37 37 H 1.09000 * 109.47077 * 300.00637 * 16 14 13 38 38 H 1.09003 * 109.47065 * 60.00537 * 16 14 13 39 39 H 0.96992 * 119.99927 * 180.02562 * 21 20 18 40 40 H 1.09004 * 113.46886 * 321.86763 * 26 9 7 41 41 H 1.08996 * 113.46900 * 92.30403 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1119 0.0000 4 7 3.5891 0.6353 0.0006 5 8 3.5995 -0.5736 0.0067 6 6 2.3508 -1.0771 0.0006 7 6 1.9695 -2.5021 0.0008 8 8 0.7952 -2.8172 0.0005 9 7 2.9228 -3.4548 0.0013 10 6 4.3933 -3.4814 -0.0047 11 6 4.3148 -4.8455 0.7006 12 6 5.3371 -5.8674 0.1994 13 7 6.5531 -5.7806 1.0118 14 6 7.5970 -6.5923 0.7514 15 8 7.5298 -7.3944 -0.1558 16 6 8.8480 -6.5026 1.5868 17 16 10.0575 -7.7117 0.9939 18 6 11.3796 -7.3972 2.1153 19 1 11.2741 -6.6366 2.8749 20 6 12.5571 -8.1261 2.0220 21 7 13.5450 -7.8908 2.8595 22 14 12.7398 -9.4410 0.7079 23 1 13.3090 -8.8354 -0.5226 24 1 13.6470 -10.5091 1.1992 25 1 11.4086 -10.0241 0.4025 26 6 2.9505 -4.9252 0.0021 27 1 -0.3633 0.0008 1.0276 28 1 -0.3633 0.8895 -0.5146 29 1 -0.3633 -0.8904 -0.5132 30 1 2.0948 2.1541 -0.0004 31 1 4.8222 -3.5344 -1.0053 32 1 4.8441 -2.7000 0.6070 33 1 4.2575 -4.7909 1.7877 34 1 4.9176 -6.8703 0.2793 35 1 5.5803 -5.6572 -0.8422 36 1 6.6067 -5.1393 1.7377 37 1 9.2676 -5.4998 1.5061 38 1 8.6051 -6.7121 2.6285 39 1 14.3679 -8.4000 2.7940 40 1 2.1723 -5.3737 0.6198 41 1 2.9988 -5.3590 -0.9966 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284952926.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:50 Heat of formation + Delta-G solvation = 5.471333 kcal Electronic energy + Delta-G solvation = -25416.407148 eV Core-core repulsion = 21426.654394 eV Total energy + Delta-G solvation = -3989.752754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.11150 -41.66929 -40.48214 -39.27727 -35.89851 -35.63847 -34.64596 -33.59275 -32.17577 -30.68040 -29.25878 -27.86052 -27.11934 -26.94429 -24.71329 -23.24875 -22.01802 -21.71205 -20.74960 -19.82254 -19.03792 -18.89945 -17.80974 -17.60458 -17.53900 -17.07174 -16.82576 -16.60123 -16.31779 -15.73332 -15.45367 -15.24819 -14.91254 -14.75940 -14.40985 -14.28101 -14.17246 -14.15484 -13.74835 -13.59625 -13.57551 -13.31113 -13.09440 -12.96652 -12.63163 -12.40942 -12.34610 -11.85305 -11.70665 -11.48813 -11.40194 -11.14732 -10.94459 -10.63740 -10.49538 -10.05780 -9.92061 -8.95699 -8.49191 -6.19302 -0.36719 1.00633 1.03024 1.28740 1.33602 1.49513 1.59565 1.63942 1.75979 1.90606 2.25643 2.29690 2.74658 2.89249 3.10590 3.15740 3.31110 3.59594 3.78075 3.86457 3.92114 4.02279 4.16644 4.19423 4.29906 4.39023 4.54082 4.54547 4.59468 4.69561 4.71115 4.76161 4.77092 4.84777 4.89267 5.19783 5.22649 5.47887 5.73028 6.14128 6.32906 6.53301 6.62738 6.96289 6.98222 7.26604 8.63086 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025089 B = 0.001784 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.754329 B =15690.928523 C =16499.887020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.120 4.120 3 C -0.004 4.004 4 N -0.366 5.366 5 O 0.109 5.891 6 C -0.108 4.108 7 C 0.631 3.369 8 O -0.542 6.542 9 N -0.640 5.640 10 C 0.099 3.901 11 C -0.115 4.115 12 C 0.135 3.865 13 N -0.710 5.710 14 C 0.537 3.463 15 O -0.563 6.563 16 C -0.113 4.113 17 S -0.178 6.178 18 C -0.528 4.528 19 H 0.062 0.938 20 C 0.044 3.956 21 N -0.918 5.918 22 Si 0.915 3.085 23 H -0.263 1.263 24 H -0.261 1.261 25 H -0.235 1.235 26 C 0.116 3.884 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.233 0.767 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.130 0.870 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.418 0.582 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.276 0.724 40 H 0.092 0.908 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.710 16.688 -5.131 33.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C -0.182 4.182 4 N -0.067 5.067 5 O 0.038 5.962 6 C -0.173 4.173 7 C 0.419 3.581 8 O -0.420 6.420 9 N -0.373 5.373 10 C -0.023 4.023 11 C -0.134 4.134 12 C 0.011 3.989 13 N -0.364 5.364 14 C 0.322 3.678 15 O -0.441 6.441 16 C -0.264 4.264 17 S 0.049 5.951 18 C -0.676 4.676 19 H 0.081 0.919 20 C -0.161 4.161 21 N -0.556 5.556 22 Si 0.737 3.263 23 H -0.188 1.188 24 H -0.186 1.186 25 H -0.159 1.159 26 C -0.005 4.005 27 H 0.107 0.893 28 H 0.120 0.880 29 H 0.091 0.909 30 H 0.250 0.750 31 H 0.124 0.876 32 H 0.113 0.887 33 H 0.148 0.852 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.255 0.745 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -28.246 15.891 -6.566 33.067 hybrid contribution 0.182 0.738 1.160 1.387 sum -28.063 16.629 -5.406 33.065 Atomic orbital electron populations 1.20402 0.84925 1.04666 1.04150 1.22046 1.00040 0.90094 1.00258 1.25590 0.86631 1.03527 1.02404 1.73782 1.24426 0.91411 1.17062 1.84979 1.28102 1.15524 1.67580 1.23943 0.85281 0.95884 1.12191 1.15958 0.84027 0.81207 0.76879 1.90840 1.17606 1.80860 1.52715 1.49458 1.08681 1.08436 1.70758 1.23590 0.78213 0.97895 1.02579 1.23110 0.94105 0.93917 1.02264 1.21266 0.82985 0.99533 0.95158 1.45681 1.14344 1.39536 1.36885 1.19857 0.84270 0.80241 0.83437 1.90703 1.82392 1.38390 1.32627 1.23291 0.95561 1.04002 1.03552 1.84705 1.13039 1.50367 1.46994 1.22484 1.01297 1.25006 1.18810 0.91940 1.25578 0.94310 0.98587 0.97636 1.70018 1.05710 1.42003 1.37857 0.85860 0.80955 0.79896 0.79618 1.18764 1.18560 1.15910 1.23180 0.96687 0.78127 1.02553 0.89259 0.87994 0.90877 0.75044 0.87608 0.88720 0.85174 0.90603 0.90749 0.74462 0.86815 0.86813 0.91450 0.88951 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 9.96 71.24 0.71 -0.13 16 2 C -0.12 -1.68 6.37 -19.45 -0.12 -1.80 16 3 C 0.00 -0.05 12.14 85.69 1.04 0.99 16 4 N -0.37 -6.50 12.04 -58.55 -0.71 -7.21 16 5 O 0.11 1.94 9.97 65.81 0.66 2.59 16 6 C -0.11 -1.86 7.25 24.39 0.18 -1.68 16 7 C 0.63 11.80 8.07 86.69 0.70 12.49 16 8 O -0.54 -12.79 15.89 -3.96 -0.06 -12.86 16 9 N -0.64 -8.76 3.69 -861.65 -3.18 -11.94 16 10 C 0.10 0.93 7.46 83.27 0.62 1.55 16 11 C -0.11 -0.89 4.12 -10.38 -0.04 -0.93 16 12 C 0.13 1.77 5.59 86.38 0.48 2.25 16 13 N -0.71 -12.56 5.56 -463.07 -2.57 -15.13 16 14 C 0.54 16.15 7.85 87.66 0.69 16.84 16 15 O -0.56 -21.87 15.86 -3.03 -0.05 -21.92 16 16 C -0.11 -3.92 6.16 71.23 0.44 -3.48 16 17 S -0.18 -8.66 18.55 -56.49 -1.05 -9.71 16 18 C -0.53 -30.16 10.04 67.95 0.68 -29.48 16 19 H 0.06 3.76 8.03 -2.91 -0.02 3.73 16 20 C 0.04 2.56 5.50 84.86 0.47 3.03 16 21 N -0.92 -55.39 13.97 21.65 0.30 -55.08 16 22 Si 0.91 44.40 27.74 68.60 1.90 46.30 16 23 H -0.26 -12.46 7.11 99.48 0.71 -11.76 16 24 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.24 -11.34 6.74 99.48 0.67 -10.67 16 26 C 0.12 1.09 8.19 83.17 0.68 1.77 16 27 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 1.02 6.73 -2.39 -0.02 1.00 16 30 H 0.23 0.95 8.06 -2.91 -0.02 0.92 16 31 H 0.11 0.88 7.87 -2.39 -0.02 0.86 16 32 H 0.09 0.84 7.56 -2.39 -0.02 0.82 16 33 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.07 7.80 -2.39 -0.02 1.05 16 36 H 0.42 4.77 8.47 -92.70 -0.79 3.98 16 37 H 0.11 3.60 8.14 -2.40 -0.02 3.58 16 38 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 39 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.11 0.80 8.10 -2.39 -0.02 0.78 16 Total: -1.00 -80.42 370.81 2.02 -78.39 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: 0.25 Total: 5.14 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 6.52 Total: 1.41 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -6.15 Total: -89.36 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: 0.54 Total: -32.18 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.90 Total: 46.30 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.05 Total: -9.71 kcal Total: -80.42 2.02 -78.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284952926.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.865 kcal (2) G-P(sol) polarization free energy of solvation -80.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds