Wall clock time and date at job start Tue Mar 31 2020 22:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30009 * 127.33500 * 2 1 4 4 O 1.20660 * 112.30394 * 179.97438 * 3 2 1 5 5 C 1.33491 * 113.15489 * 359.74843 * 4 3 2 6 6 C 1.37359 * 106.34268 * 0.39553 * 5 4 3 7 7 C 1.47397 * 128.56634 * 179.91151 * 6 5 4 8 8 O 1.21611 * 119.99874 * 179.66859 * 7 6 5 9 9 N 1.34769 * 119.99807 * 359.67570 * 7 6 5 10 10 C 1.46503 * 119.99974 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47355 * 184.97642 * 10 9 7 12 12 H 1.09003 * 112.78279 * 314.88665 * 11 10 9 13 13 C 1.53755 * 113.55226 * 85.74085 * 11 10 9 14 14 C 1.53500 * 83.25862 * 140.99071 * 13 11 10 15 15 N 1.47070 * 113.46947 * 184.10333 * 11 10 9 16 16 C 1.34769 * 136.05848 * 38.14049 * 15 11 10 17 17 O 1.21288 * 119.99831 * 354.63927 * 16 15 11 18 18 C 1.50698 * 120.00200 * 174.64564 * 16 15 11 19 19 S 1.81004 * 109.47177 * 179.97438 * 18 16 15 20 20 C 1.76194 * 100.00009 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00305 * 359.97438 * 20 19 18 22 22 C 1.38805 * 120.00055 * 180.27708 * 20 19 18 23 23 N 1.31633 * 119.99584 * 359.72013 * 22 20 19 24 24 Si 1.86800 * 120.00095 * 179.72403 * 22 20 19 25 25 H 1.48497 * 109.46900 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47055 * 119.99716 * 24 22 20 27 27 H 1.48500 * 109.46924 * 240.00033 * 24 22 20 28 28 H 1.09000 * 109.47458 * 270.00737 * 1 2 3 29 29 H 1.08996 * 109.46678 * 30.01005 * 1 2 3 30 30 H 1.09003 * 109.46750 * 150.00752 * 1 2 3 31 31 H 1.07993 * 126.82644 * 180.29827 * 5 4 3 32 32 H 0.97000 * 120.00235 * 359.97438 * 9 7 6 33 33 H 1.08999 * 109.47114 * 64.97644 * 10 9 7 34 34 H 1.08995 * 109.47290 * 304.97639 * 10 9 7 35 35 H 1.08998 * 114.39379 * 27.43039 * 13 11 10 36 36 H 1.09008 * 114.08930 * 254.53003 * 13 11 10 37 37 H 1.08998 * 113.46473 * 218.98786 * 14 13 11 38 38 H 1.08996 * 113.52271 * 88.55254 * 14 13 11 39 39 H 1.08996 * 109.47639 * 59.99297 * 18 16 15 40 40 H 1.09001 * 109.46871 * 299.99064 * 18 16 15 41 41 H 0.96997 * 119.99362 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6495 -0.6007 0.0063 6 6 2.3992 -1.1696 0.0008 7 6 2.0402 -2.5992 0.0019 8 8 0.8706 -2.9324 0.0023 9 7 3.0081 -3.5370 0.0025 10 6 2.6512 -4.9579 0.0042 11 6 3.9208 -5.8025 0.1297 12 1 4.7220 -5.4601 -0.5253 13 6 4.3706 -6.0232 1.5833 14 6 4.7051 -7.4325 1.0752 15 7 3.6724 -7.2496 0.0442 16 6 2.8603 -8.0543 -0.6694 17 8 2.0267 -7.5738 -1.4078 18 6 2.9879 -9.5511 -0.5498 19 16 1.7676 -10.3483 -1.6229 20 6 2.1312 -12.0409 -1.2950 21 1 2.9173 -12.2998 -0.6011 22 6 1.4117 -13.0416 -1.9333 23 7 0.4540 -12.7260 -2.7794 24 14 1.8024 -14.8360 -1.5915 25 1 2.9134 -14.9224 -0.6101 26 1 0.5992 -15.5078 -1.0383 27 1 2.2055 -15.5041 -2.8550 28 1 -0.3634 0.0001 1.0276 29 1 -0.3632 0.8899 -0.5140 30 1 -0.3633 -0.8901 -0.5137 31 1 4.5967 -1.1194 0.0124 32 1 3.9409 -3.2713 0.0018 33 1 2.1408 -5.2054 -0.9266 34 1 1.9917 -5.1660 0.8466 35 1 3.5627 -5.9917 2.3143 36 1 5.2409 -5.4346 1.8740 37 1 4.4688 -8.2195 1.7913 38 1 5.7128 -7.5208 0.6694 39 1 2.8123 -9.8493 0.4838 40 1 3.9904 -9.8554 -0.8504 41 1 -0.0491 -13.4254 -3.2252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285892248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:45 Heat of formation + Delta-G solvation = 31.395695 kcal Electronic energy + Delta-G solvation = -25663.432484 eV Core-core repulsion = 21674.803894 eV Total energy + Delta-G solvation = -3988.628590 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.33452 -40.70408 -39.59177 -37.59142 -35.11867 -34.79397 -32.61358 -32.45436 -30.82043 -29.30554 -28.58356 -28.15370 -25.51410 -25.11377 -23.18099 -22.22359 -21.74662 -20.98621 -19.27719 -18.52409 -18.14769 -17.74660 -17.00839 -16.77240 -16.39842 -15.66726 -15.57273 -15.27185 -14.83008 -14.76390 -14.35371 -13.96142 -13.90198 -13.78811 -13.55764 -13.45805 -13.01125 -12.82121 -12.73112 -12.55122 -12.20009 -11.99342 -11.74282 -11.69554 -11.09102 -11.06679 -10.95106 -10.78300 -10.42629 -10.30636 -10.20874 -9.84261 -9.55858 -9.26901 -9.09938 -8.73986 -8.26569 -6.53453 -6.24159 -3.95219 0.61160 1.39900 2.30937 2.59579 2.86382 2.90618 3.02834 3.19813 3.23323 3.29057 3.52398 3.63436 3.86318 3.97467 4.17397 4.39388 4.40656 4.54276 4.61086 4.70128 4.86024 4.88650 5.07680 5.11155 5.19992 5.24571 5.25198 5.38217 5.38749 5.47377 5.55890 5.73358 5.78213 5.81362 5.89622 5.91283 6.09344 6.14488 7.04444 7.57342 7.73685 7.76762 7.83424 8.32824 8.45746 9.21119 10.83313 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025166 B = 0.001927 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.348216 B =14523.152374 C =15362.800390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.072 3.928 3 N -0.360 5.360 4 O 0.098 5.902 5 C -0.007 4.007 6 C -0.251 4.251 7 C 0.593 3.407 8 O -0.518 6.518 9 N -0.719 5.719 10 C 0.114 3.886 11 C 0.123 3.877 12 H 0.095 0.905 13 C -0.152 4.152 14 C 0.101 3.899 15 N -0.647 5.647 16 C 0.561 3.439 17 O -0.507 6.507 18 C -0.144 4.144 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.920 3.080 25 H -0.272 1.272 26 H -0.279 1.279 27 H -0.280 1.280 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.226 0.774 32 H 0.397 0.603 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.799 23.405 10.473 28.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 N -0.068 5.068 4 O 0.039 5.961 5 C -0.090 4.090 6 C -0.258 4.258 7 C 0.379 3.621 8 O -0.394 6.394 9 N -0.372 5.372 10 C -0.010 4.010 11 C 0.018 3.982 12 H 0.113 0.887 13 C -0.190 4.190 14 C -0.022 4.022 15 N -0.387 5.387 16 C 0.351 3.649 17 O -0.381 6.381 18 C -0.295 4.295 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.746 3.254 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.206 1.206 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.242 0.758 32 H 0.231 0.769 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.205 24.925 9.098 28.428 hybrid contribution 1.871 -2.579 0.982 3.334 sum 12.076 22.347 10.080 27.328 Atomic orbital electron populations 1.20313 0.84698 1.04654 1.04082 1.24922 0.99113 0.86180 0.98847 1.73705 0.89188 1.23514 1.20349 1.84582 1.21649 1.22938 1.66973 1.26402 1.00173 0.84253 0.98169 1.22368 0.92940 0.95582 1.14947 1.16782 0.85537 0.82953 0.76833 1.90858 1.18102 1.81736 1.48662 1.45630 1.09015 1.06500 1.76022 1.21676 0.96716 0.77581 1.05025 1.22816 0.96195 0.82915 0.96268 0.88683 1.23647 1.02528 0.97014 0.95762 1.22890 0.92213 0.97961 0.89173 1.49757 1.39415 1.06593 1.42907 1.20027 0.79303 0.87924 0.77636 1.90733 1.34024 1.76193 1.37102 1.23477 1.06757 0.92838 1.06412 1.85445 1.42048 1.01645 1.54133 1.22891 1.23378 0.91013 1.31070 0.90865 1.25007 0.94513 0.99624 0.94492 1.70029 1.20371 1.33624 1.26155 0.86102 0.78371 0.82682 0.78253 1.19619 1.20529 1.20552 0.89618 0.90309 0.88388 0.75781 0.76933 0.89067 0.90152 0.88361 0.89234 0.89945 0.89706 0.89295 0.89277 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.14 36.01 0.37 -0.34 16 2 C 0.07 0.72 7.58 -79.76 -0.60 0.11 16 3 N -0.36 -3.58 12.01 34.78 0.42 -3.17 16 4 O 0.10 0.74 11.06 18.66 0.21 0.95 16 5 C -0.01 -0.04 11.85 30.41 0.36 0.32 16 6 C -0.25 -2.19 6.47 -102.89 -0.67 -2.85 16 7 C 0.59 6.42 7.81 -12.54 -0.10 6.33 16 8 O -0.52 -7.90 15.69 5.27 0.08 -7.82 16 9 N -0.72 -5.75 5.55 -61.40 -0.34 -6.10 16 10 C 0.11 1.27 5.40 -4.04 -0.02 1.25 16 11 C 0.12 1.09 4.09 -72.26 -0.30 0.79 16 12 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 13 C -0.15 -0.90 8.03 -26.08 -0.21 -1.11 16 14 C 0.10 0.81 8.41 -8.50 -0.07 0.74 16 15 N -0.65 -8.33 3.56 -177.27 -0.63 -8.96 16 16 C 0.56 10.44 8.02 -10.99 -0.09 10.36 16 17 O -0.51 -11.47 15.24 5.55 0.08 -11.39 16 18 C -0.14 -2.91 5.99 36.00 0.22 -2.69 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 20 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 21 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 24 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 0.98 7.11 -51.93 -0.37 0.61 16 31 H 0.23 -0.10 7.68 -52.49 -0.40 -0.51 16 32 H 0.40 1.47 7.66 -40.82 -0.31 1.15 16 33 H 0.09 1.41 7.05 -51.93 -0.37 1.04 16 34 H 0.08 1.02 7.90 -51.93 -0.41 0.61 16 35 H 0.10 0.65 7.97 -51.93 -0.41 0.24 16 36 H 0.09 0.26 8.14 -51.92 -0.42 -0.16 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 40 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 41 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -39.11 373.20 -7.18 -46.29 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -5.20 Total: -2.50 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -0.91 Total: 0.00 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.18 Total: -43.61 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.37 Total: -18.26 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -39.11 -7.18 -46.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285892248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.681 kcal (2) G-P(sol) polarization free energy of solvation -39.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds