Wall clock time and date at job start Tue Mar 31 2020 22:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30009 * 127.33500 * 2 1 4 4 O 1.20660 * 112.30394 * 179.97438 * 3 2 1 5 5 C 1.33491 * 113.15489 * 359.74843 * 4 3 2 6 6 C 1.37359 * 106.34268 * 0.39553 * 5 4 3 7 7 C 1.47397 * 128.56634 * 179.91151 * 6 5 4 8 8 O 1.21611 * 119.99874 * 179.66859 * 7 6 5 9 9 N 1.34769 * 119.99807 * 359.67570 * 7 6 5 10 10 C 1.46503 * 119.99974 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47355 * 184.97642 * 10 9 7 12 12 H 1.09003 * 112.78279 * 314.88665 * 11 10 9 13 13 C 1.53755 * 113.55226 * 85.74085 * 11 10 9 14 14 C 1.53500 * 83.25862 * 140.99071 * 13 11 10 15 15 N 1.47070 * 113.46947 * 184.10333 * 11 10 9 16 16 C 1.34769 * 136.05848 * 38.14049 * 15 11 10 17 17 O 1.21288 * 119.99831 * 354.63927 * 16 15 11 18 18 C 1.50698 * 120.00200 * 174.64564 * 16 15 11 19 19 S 1.81004 * 109.47177 * 179.97438 * 18 16 15 20 20 C 1.76194 * 100.00009 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00305 * 359.97438 * 20 19 18 22 22 C 1.38805 * 120.00055 * 180.27708 * 20 19 18 23 23 N 1.31633 * 119.99584 * 359.72013 * 22 20 19 24 24 Si 1.86800 * 120.00095 * 179.72403 * 22 20 19 25 25 H 1.48497 * 109.46900 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47055 * 119.99716 * 24 22 20 27 27 H 1.48500 * 109.46924 * 240.00033 * 24 22 20 28 28 H 1.09000 * 109.47458 * 270.00737 * 1 2 3 29 29 H 1.08996 * 109.46678 * 30.01005 * 1 2 3 30 30 H 1.09003 * 109.46750 * 150.00752 * 1 2 3 31 31 H 1.07993 * 126.82644 * 180.29827 * 5 4 3 32 32 H 0.97000 * 120.00235 * 359.97438 * 9 7 6 33 33 H 1.08999 * 109.47114 * 64.97644 * 10 9 7 34 34 H 1.08995 * 109.47290 * 304.97639 * 10 9 7 35 35 H 1.08998 * 114.39379 * 27.43039 * 13 11 10 36 36 H 1.09008 * 114.08930 * 254.53003 * 13 11 10 37 37 H 1.08998 * 113.46473 * 218.98786 * 14 13 11 38 38 H 1.08996 * 113.52271 * 88.55254 * 14 13 11 39 39 H 1.08996 * 109.47639 * 59.99297 * 18 16 15 40 40 H 1.09001 * 109.46871 * 299.99064 * 18 16 15 41 41 H 0.96997 * 119.99362 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6495 -0.6007 0.0063 6 6 2.3992 -1.1696 0.0008 7 6 2.0402 -2.5992 0.0019 8 8 0.8706 -2.9324 0.0023 9 7 3.0081 -3.5370 0.0025 10 6 2.6512 -4.9579 0.0042 11 6 3.9208 -5.8025 0.1297 12 1 4.7220 -5.4601 -0.5253 13 6 4.3706 -6.0232 1.5833 14 6 4.7051 -7.4325 1.0752 15 7 3.6724 -7.2496 0.0442 16 6 2.8603 -8.0543 -0.6694 17 8 2.0267 -7.5738 -1.4078 18 6 2.9879 -9.5511 -0.5498 19 16 1.7676 -10.3483 -1.6229 20 6 2.1312 -12.0409 -1.2950 21 1 2.9173 -12.2998 -0.6011 22 6 1.4117 -13.0416 -1.9333 23 7 0.4540 -12.7260 -2.7794 24 14 1.8024 -14.8360 -1.5915 25 1 2.9134 -14.9224 -0.6101 26 1 0.5992 -15.5078 -1.0383 27 1 2.2055 -15.5041 -2.8550 28 1 -0.3634 0.0001 1.0276 29 1 -0.3632 0.8899 -0.5140 30 1 -0.3633 -0.8901 -0.5137 31 1 4.5967 -1.1194 0.0124 32 1 3.9409 -3.2713 0.0018 33 1 2.1408 -5.2054 -0.9266 34 1 1.9917 -5.1660 0.8466 35 1 3.5627 -5.9917 2.3143 36 1 5.2409 -5.4346 1.8740 37 1 4.4688 -8.2195 1.7913 38 1 5.7128 -7.5208 0.6694 39 1 2.8123 -9.8493 0.4838 40 1 3.9904 -9.8554 -0.8504 41 1 -0.0491 -13.4254 -3.2252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285892248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:45 Heat of formation + Delta-G solvation = 0.560987 kcal Electronic energy + Delta-G solvation = -25664.769577 eV Core-core repulsion = 21674.803894 eV Total energy + Delta-G solvation = -3989.965683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.98869 -41.63496 -40.51677 -38.88240 -35.97037 -35.51465 -34.60814 -33.28506 -32.11663 -30.06812 -29.45007 -29.28151 -27.66809 -25.82487 -23.91178 -23.15771 -22.41176 -21.74925 -20.34487 -19.68712 -19.16083 -18.80265 -18.02047 -17.65384 -17.38727 -16.90918 -16.76690 -16.54327 -16.34123 -15.88467 -15.61782 -15.29163 -14.82432 -14.61831 -14.52237 -14.26744 -14.16813 -13.89817 -13.81258 -13.45776 -13.39019 -13.16590 -12.93711 -12.89283 -12.62177 -12.40502 -12.36216 -11.73940 -11.72135 -11.32732 -11.17878 -11.00225 -10.86394 -10.81598 -10.30145 -10.21212 -9.76968 -8.70582 -8.36728 -6.15801 0.06465 0.70089 1.17391 1.39943 1.40591 1.53921 1.56155 1.71019 2.05145 2.08554 2.25317 2.34145 2.97473 2.97901 3.19558 3.29444 3.35574 3.67623 3.72591 3.78191 3.96061 4.02330 4.05463 4.24416 4.40510 4.44161 4.50083 4.55353 4.59232 4.63763 4.69927 4.73356 4.77176 4.98999 5.01922 5.11846 5.21626 5.37164 5.39656 6.17852 6.39586 6.61947 7.04258 7.07604 7.13134 7.20328 8.72857 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025166 B = 0.001927 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.348216 B =14523.152374 C =15362.800390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.049 3.951 3 N -0.380 5.380 4 O 0.101 5.899 5 C 0.042 3.958 6 C -0.284 4.284 7 C 0.593 3.407 8 O -0.576 6.576 9 N -0.694 5.694 10 C 0.122 3.878 11 C 0.121 3.879 12 H 0.132 0.868 13 C -0.124 4.124 14 C 0.093 3.907 15 N -0.651 5.651 16 C 0.556 3.444 17 O -0.565 6.565 18 C -0.117 4.117 19 S -0.156 6.156 20 C -0.544 4.544 21 H 0.084 0.916 22 C 0.011 3.989 23 N -0.912 5.912 24 Si 1.002 2.998 25 H -0.255 1.255 26 H -0.274 1.274 27 H -0.273 1.273 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.288 0.712 32 H 0.423 0.577 33 H 0.040 0.960 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.143 0.857 37 H 0.084 0.916 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.630 23.827 12.668 32.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 N -0.088 5.088 4 O 0.042 5.958 5 C -0.040 4.040 6 C -0.292 4.292 7 C 0.380 3.620 8 O -0.456 6.456 9 N -0.348 5.348 10 C -0.003 4.003 11 C 0.018 3.982 12 H 0.150 0.850 13 C -0.162 4.162 14 C -0.028 4.028 15 N -0.388 5.388 16 C 0.345 3.655 17 O -0.444 6.444 18 C -0.268 4.268 19 S 0.071 5.929 20 C -0.692 4.692 21 H 0.102 0.898 22 C -0.194 4.194 23 N -0.549 5.549 24 Si 0.823 3.177 25 H -0.178 1.178 26 H -0.200 1.200 27 H -0.199 1.199 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.303 0.697 32 H 0.262 0.738 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.161 0.839 37 H 0.103 0.897 38 H 0.135 0.865 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.146 25.401 11.349 31.677 hybrid contribution 0.505 -2.549 0.374 2.626 sum 15.651 22.851 11.724 30.076 Atomic orbital electron populations 1.20259 0.85005 1.04107 1.04257 1.25159 0.99640 0.87075 0.99454 1.73713 0.89944 1.23853 1.21334 1.84555 1.20635 1.24204 1.66372 1.27398 1.00774 0.82793 0.92995 1.22143 0.94504 0.94021 1.18507 1.17126 0.85047 0.84115 0.75690 1.90836 1.20635 1.82707 1.51446 1.45280 1.10005 1.04711 1.74771 1.21348 0.97721 0.79705 1.01485 1.23284 0.95462 0.79818 0.99625 0.85009 1.23608 1.03902 0.95776 0.92892 1.23379 0.92103 0.99525 0.87749 1.49817 1.38783 1.08475 1.41769 1.19680 0.80069 0.87688 0.78045 1.90714 1.36806 1.76839 1.40004 1.23260 1.04646 0.93970 1.04935 1.85657 1.46333 1.03478 1.57423 1.23218 1.23639 0.91084 1.31251 0.89825 1.26186 0.94070 1.05142 0.93971 1.70203 1.21750 1.35407 1.27500 0.84865 0.78639 0.75641 0.78544 1.17812 1.19979 1.19863 0.89148 0.89313 0.90363 0.69720 0.73815 0.94146 0.92401 0.89202 0.83941 0.89722 0.86457 0.87869 0.87478 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 10.14 71.24 0.72 -0.78 16 2 C 0.05 0.97 7.58 45.16 0.34 1.31 16 3 N -0.38 -7.16 12.01 -44.77 -0.54 -7.70 16 4 O 0.10 1.24 11.06 77.00 0.85 2.09 16 5 C 0.04 0.25 11.85 67.61 0.80 1.05 16 6 C -0.28 -4.56 6.47 -18.74 -0.12 -4.68 16 7 C 0.59 12.79 7.81 86.66 0.68 13.47 16 8 O -0.58 -19.01 15.69 -4.06 -0.06 -19.08 16 9 N -0.69 -9.80 5.55 -466.41 -2.59 -12.38 16 10 C 0.12 2.72 5.40 86.38 0.47 3.19 16 11 C 0.12 1.77 4.09 41.88 0.17 1.94 16 12 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 13 C -0.12 -0.83 8.03 31.02 0.25 -0.58 16 14 C 0.09 1.08 8.41 83.18 0.70 1.78 16 15 N -0.65 -15.57 3.56 -833.15 -2.97 -18.53 16 16 C 0.56 21.04 8.02 87.66 0.70 21.75 16 17 O -0.57 -27.22 15.24 -3.05 -0.05 -27.26 16 18 C -0.12 -4.74 5.99 71.24 0.43 -4.31 16 19 S -0.16 -8.86 20.57 -56.49 -1.16 -10.02 16 20 C -0.54 -31.33 9.50 67.96 0.65 -30.68 16 21 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 22 C 0.01 0.62 5.49 84.86 0.47 1.09 16 23 N -0.91 -56.73 13.22 21.65 0.29 -56.45 16 24 Si 1.00 43.72 29.55 68.60 2.03 45.75 16 25 H -0.25 -10.28 7.11 99.48 0.71 -9.58 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 28 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.79 7.11 -2.39 -0.02 1.77 16 31 H 0.29 -2.35 7.68 -2.91 -0.02 -2.38 16 32 H 0.42 1.13 7.66 -92.71 -0.71 0.42 16 33 H 0.04 1.35 7.05 -2.39 -0.02 1.33 16 34 H 0.06 1.54 7.90 -2.39 -0.02 1.52 16 35 H 0.09 0.85 7.97 -2.39 -0.02 0.83 16 36 H 0.14 -0.35 8.14 -2.38 -0.02 -0.37 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.10 3.82 8.14 -2.40 -0.02 3.80 16 40 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 41 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -97.11 373.20 2.42 -94.69 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 0.37 Total: 4.35 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 6.25 Total: 4.54 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -5.81 Total: -95.06 kcal Atomic # 8 Polarization: -44.99 SS G_CDS: 0.74 Total: -44.25 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.16 Total: -10.02 kcal Total: -97.11 2.42 -94.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285892248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.251 kcal (2) G-P(sol) polarization free energy of solvation -97.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds