Wall clock time and date at job start Tue Mar 31 2020 22:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33701 * 126.27555 * 2 1 4 4 C 1.30615 * 108.99560 * 180.27240 * 3 2 1 5 5 O 1.33663 * 109.15487 * 359.72741 * 4 3 2 6 6 C 1.35345 * 107.68558 * 0.02562 * 5 4 3 7 7 C 1.46719 * 126.64242 * 180.02562 * 6 5 4 8 8 O 1.21687 * 119.99770 * 180.02562 * 7 6 5 9 9 N 1.34782 * 120.00185 * 0.02562 * 7 6 5 10 10 C 1.47419 * 125.64589 * 0.04059 * 9 7 6 11 11 C 1.55123 * 104.94292 * 203.96846 * 10 9 7 12 12 C 1.55162 * 101.48511 * 323.22290 * 11 10 9 13 13 H 1.08997 * 110.72023 * 276.82961 * 12 11 10 14 14 N 1.46499 * 110.72027 * 153.73303 * 12 11 10 15 15 C 1.34773 * 119.99849 * 157.44351 * 14 12 11 16 16 O 1.21283 * 120.00144 * 359.97438 * 15 14 12 17 17 C 1.50705 * 119.99721 * 179.97438 * 15 14 12 18 18 S 1.81000 * 109.46942 * 180.02562 * 17 15 14 19 19 C 1.76195 * 100.00017 * 180.02562 * 18 17 15 20 20 H 1.08004 * 120.00294 * 359.97438 * 19 18 17 21 21 C 1.38802 * 120.00153 * 180.02562 * 19 18 17 22 22 N 1.31632 * 120.00093 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00020 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 90.00077 * 23 21 19 25 25 H 1.48503 * 109.47261 * 330.00257 * 23 21 19 26 26 H 1.48500 * 109.47454 * 210.00251 * 23 21 19 27 27 C 1.47019 * 125.64621 * 179.97438 * 9 7 6 28 28 H 1.09009 * 109.46598 * 270.18989 * 1 2 3 29 29 H 1.08991 * 109.47044 * 30.18828 * 1 2 3 30 30 H 1.08995 * 109.47227 * 150.19165 * 1 2 3 31 31 H 1.08004 * 125.42086 * 179.75121 * 4 3 2 32 32 H 1.09004 * 110.36963 * 322.93498 * 10 9 7 33 33 H 1.09007 * 110.36487 * 85.14733 * 10 9 7 34 34 H 1.08999 * 111.16282 * 205.13670 * 11 10 9 35 35 H 1.09000 * 110.93718 * 81.21315 * 11 10 9 36 36 H 0.97000 * 119.99965 * 337.44139 * 14 12 11 37 37 H 1.08997 * 109.46935 * 60.00104 * 17 15 14 38 38 H 1.09000 * 109.47082 * 299.99666 * 17 15 14 39 39 H 0.97006 * 119.99745 * 179.97438 * 22 21 19 40 40 H 1.09004 * 109.87934 * 59.56381 * 27 9 7 41 41 H 1.08996 * 110.01449 * 298.46920 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2981 1.0779 0.0000 4 6 3.5452 0.6899 -0.0059 5 8 3.5890 -0.6460 -0.0038 6 6 2.3137 -1.0992 0.0031 7 6 1.8827 -2.5016 0.0081 8 8 0.6967 -2.7736 0.0137 9 7 2.8005 -3.4887 0.0065 10 6 4.2628 -3.3021 0.0007 11 6 4.8307 -4.6111 -0.6079 12 6 3.8623 -5.6710 -0.0194 13 1 4.1683 -5.9563 0.9870 14 7 3.7897 -6.8469 -0.8901 15 6 3.3973 -8.0343 -0.3875 16 8 3.1047 -8.1293 0.7857 17 6 3.3221 -9.2438 -1.2833 18 16 2.7667 -10.6731 -0.3217 19 6 2.7700 -11.9076 -1.5789 20 1 3.0623 -11.6515 -2.5866 21 6 2.3958 -13.2092 -1.2745 22 7 2.3978 -14.1313 -2.2138 23 14 1.8895 -13.6521 0.4682 24 1 0.4252 -13.4591 0.6225 25 1 2.6081 -12.7779 1.4298 26 1 2.2328 -15.0716 0.7378 27 6 2.5090 -4.9297 0.0115 28 1 -0.3633 0.0034 1.0278 29 1 -0.3633 0.8882 -0.5167 30 1 -0.3633 -0.8916 -0.5108 31 1 4.4044 1.3444 -0.0111 32 1 4.5337 -2.4463 -0.6177 33 1 4.6320 -3.1665 1.0174 34 1 5.8533 -4.7887 -0.2749 35 1 4.7737 -4.5914 -1.6962 36 1 4.0240 -6.7709 -1.8283 37 1 4.3076 -9.4477 -1.7019 38 1 2.6161 -9.0538 -2.0918 39 1 2.1366 -15.0410 -2.0009 40 1 1.9225 -5.1923 -0.8690 41 1 1.9606 -5.1962 0.9150 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001294702049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:24 Heat of formation + Delta-G solvation = -38.745105 kcal Electronic energy + Delta-G solvation = -26008.344524 eV Core-core repulsion = 22016.674401 eV Total energy + Delta-G solvation = -3991.670123 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.93710 -40.54923 -39.33415 -37.74965 -35.80871 -34.34042 -32.46422 -32.16797 -31.35186 -29.80949 -28.85670 -27.67242 -25.64636 -24.85894 -23.37841 -22.30921 -21.49413 -20.70182 -20.23154 -18.29199 -17.78879 -17.54710 -17.17819 -16.96400 -16.36464 -16.10469 -15.58812 -15.17516 -15.03202 -14.94978 -14.54317 -13.95219 -13.77974 -13.70485 -13.54758 -13.42684 -13.23854 -12.84824 -12.82177 -12.60114 -12.45030 -12.30847 -11.84521 -11.59123 -11.40306 -11.29275 -11.21886 -11.02888 -10.65344 -10.56635 -9.88949 -9.66231 -9.52624 -9.25435 -9.05627 -9.02239 -8.54314 -6.95528 -6.31378 -4.03686 0.34183 1.89393 1.93831 2.42844 2.63774 2.73845 2.82480 3.24069 3.32076 3.48328 3.53347 3.58627 3.92383 4.00528 4.25387 4.30748 4.35389 4.55844 4.67277 4.75771 4.86022 4.91169 4.97493 5.07707 5.13924 5.21335 5.28840 5.32028 5.40809 5.43193 5.52234 5.60395 5.65164 5.70267 5.77664 5.89120 5.95301 6.35892 6.83876 7.06890 7.43617 7.53944 7.91518 8.34093 8.38991 9.14643 10.77738 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029423 B = 0.001960 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.418911 B =14284.466147 C =14743.226575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.082 3.918 3 N -0.493 5.493 4 C 0.201 3.799 5 O -0.189 6.189 6 C -0.111 4.111 7 C 0.621 3.379 8 O -0.508 6.508 9 N -0.608 5.608 10 C 0.100 3.900 11 C -0.138 4.138 12 C 0.139 3.861 13 H 0.109 0.891 14 N -0.728 5.728 15 C 0.533 3.467 16 O -0.514 6.514 17 C -0.125 4.125 18 S -0.140 6.140 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.879 5.879 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.235 1.235 26 H -0.274 1.274 27 C 0.096 3.904 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.257 0.743 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.403 0.597 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.271 0.729 40 H 0.080 0.920 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.697 30.837 2.200 31.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 N -0.222 5.222 4 C -0.025 4.025 5 O -0.076 6.076 6 C -0.166 4.166 7 C 0.409 3.591 8 O -0.385 6.385 9 N -0.341 5.341 10 C -0.023 4.023 11 C -0.177 4.177 12 C 0.032 3.968 13 H 0.127 0.873 14 N -0.383 5.383 15 C 0.319 3.681 16 O -0.388 6.388 17 C -0.275 4.275 18 S 0.086 5.914 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.159 1.159 26 H -0.199 1.199 27 C -0.028 4.028 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.272 0.728 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.238 0.762 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.347 30.937 4.117 31.665 hybrid contribution 0.701 -0.761 -1.276 1.643 sum 6.048 30.176 2.841 30.907 Atomic orbital electron populations 1.20428 0.85169 1.04542 1.03934 1.22103 0.98489 0.86246 0.97288 1.70384 1.01371 1.31415 1.19064 1.28387 0.97670 0.79627 0.96779 1.84577 1.29519 1.24241 1.69227 1.22776 0.81460 0.95864 1.16496 1.15911 0.84832 0.80800 0.77561 1.90907 1.15201 1.81566 1.50817 1.48228 1.07005 1.06536 1.72378 1.22499 0.79147 0.98693 1.01980 1.23139 0.99878 0.93020 1.01656 1.21853 0.93285 0.85002 0.96661 0.87289 1.45926 1.71047 1.08075 1.13218 1.20380 0.75514 0.83534 0.88661 1.90718 1.46562 1.84612 1.16867 1.23282 1.05834 0.96353 1.02065 1.84812 1.88256 1.01302 1.17050 1.22304 1.52959 0.94941 0.96775 0.89354 1.24719 0.93723 0.95126 0.97768 1.69939 1.45990 1.02710 1.32943 0.86734 0.80670 0.79267 0.85161 1.19176 1.15940 1.19925 1.22533 0.98338 0.77902 1.04011 0.89801 0.90302 0.88557 0.72751 0.89386 0.90411 0.88442 0.89625 0.76214 0.88295 0.88345 0.91913 0.90200 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 9.87 36.01 0.36 -0.37 16 2 C 0.08 0.81 7.16 -82.46 -0.59 0.22 16 3 N -0.49 -4.36 11.26 -10.88 -0.12 -4.48 16 4 C 0.20 1.09 13.21 52.24 0.69 1.78 16 5 O -0.19 -1.35 8.07 4.42 0.04 -1.31 16 6 C -0.11 -1.09 6.96 -36.84 -0.26 -1.35 16 7 C 0.62 7.18 7.82 -12.83 -0.10 7.08 16 8 O -0.51 -7.27 15.12 5.20 0.08 -7.19 16 9 N -0.61 -5.96 3.33 -171.90 -0.57 -6.53 16 10 C 0.10 0.64 6.19 -2.42 -0.01 0.62 16 11 C -0.14 -0.80 6.73 -24.46 -0.16 -0.96 16 12 C 0.14 1.31 3.27 -66.09 -0.22 1.09 16 13 H 0.11 1.18 7.62 -51.93 -0.40 0.78 16 14 N -0.73 -7.93 5.12 -52.03 -0.27 -8.20 16 15 C 0.53 8.65 7.85 -10.98 -0.09 8.56 16 16 O -0.51 -10.33 15.55 5.56 0.09 -10.24 16 17 C -0.12 -2.27 6.16 36.01 0.22 -2.05 16 18 S -0.14 -3.47 18.55 -107.50 -1.99 -5.47 16 19 C -0.52 -14.80 10.04 30.94 0.31 -14.49 16 20 H 0.09 2.61 8.03 -52.48 -0.42 2.18 16 21 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 22 N -0.88 -26.29 13.97 55.49 0.78 -25.52 16 23 Si 0.86 21.59 27.74 -169.99 -4.71 16.87 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 26 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.10 1.04 6.63 -3.06 -0.02 1.02 16 28 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.10 0.93 6.47 -51.93 -0.34 0.59 16 31 H 0.26 -0.04 8.06 -52.48 -0.42 -0.46 16 32 H 0.09 0.49 6.25 -51.93 -0.32 0.16 16 33 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.42 8.00 -51.93 -0.42 0.01 16 36 H 0.40 3.24 8.54 -40.82 -0.35 2.89 16 37 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 38 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.08 0.94 8.03 -51.93 -0.42 0.53 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 363.32 15.07 5.48 5.48 Total: -1.00 -37.02 363.32 -6.38 -43.41 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.20 Total: -0.64 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 0.03 Total: 3.84 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -0.19 Total: -44.73 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.20 Total: -18.75 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.87 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -1.99 Total: -5.47 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.02 -6.38 -43.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001294702049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.661 kcal (2) G-P(sol) polarization free energy of solvation -37.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds