Wall clock time and date at job start Tue Mar 31 2020 22:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33701 * 126.27555 * 2 1 4 4 C 1.30615 * 108.99560 * 180.27240 * 3 2 1 5 5 O 1.33663 * 109.15487 * 359.72741 * 4 3 2 6 6 C 1.35345 * 107.68558 * 0.02562 * 5 4 3 7 7 C 1.46719 * 126.64242 * 180.02562 * 6 5 4 8 8 O 1.21687 * 119.99770 * 180.02562 * 7 6 5 9 9 N 1.34782 * 120.00185 * 0.02562 * 7 6 5 10 10 C 1.47419 * 125.64589 * 0.04059 * 9 7 6 11 11 C 1.55123 * 104.94292 * 203.96846 * 10 9 7 12 12 C 1.55162 * 101.48511 * 323.22290 * 11 10 9 13 13 H 1.08997 * 110.72023 * 276.82961 * 12 11 10 14 14 N 1.46499 * 110.72027 * 153.73303 * 12 11 10 15 15 C 1.34773 * 119.99849 * 157.44351 * 14 12 11 16 16 O 1.21283 * 120.00144 * 359.97438 * 15 14 12 17 17 C 1.50705 * 119.99721 * 179.97438 * 15 14 12 18 18 S 1.81000 * 109.46942 * 180.02562 * 17 15 14 19 19 C 1.76195 * 100.00017 * 180.02562 * 18 17 15 20 20 H 1.08004 * 120.00294 * 359.97438 * 19 18 17 21 21 C 1.38802 * 120.00153 * 180.02562 * 19 18 17 22 22 N 1.31632 * 120.00093 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00020 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 90.00077 * 23 21 19 25 25 H 1.48503 * 109.47261 * 330.00257 * 23 21 19 26 26 H 1.48500 * 109.47454 * 210.00251 * 23 21 19 27 27 C 1.47019 * 125.64621 * 179.97438 * 9 7 6 28 28 H 1.09009 * 109.46598 * 270.18989 * 1 2 3 29 29 H 1.08991 * 109.47044 * 30.18828 * 1 2 3 30 30 H 1.08995 * 109.47227 * 150.19165 * 1 2 3 31 31 H 1.08004 * 125.42086 * 179.75121 * 4 3 2 32 32 H 1.09004 * 110.36963 * 322.93498 * 10 9 7 33 33 H 1.09007 * 110.36487 * 85.14733 * 10 9 7 34 34 H 1.08999 * 111.16282 * 205.13670 * 11 10 9 35 35 H 1.09000 * 110.93718 * 81.21315 * 11 10 9 36 36 H 0.97000 * 119.99965 * 337.44139 * 14 12 11 37 37 H 1.08997 * 109.46935 * 60.00104 * 17 15 14 38 38 H 1.09000 * 109.47082 * 299.99666 * 17 15 14 39 39 H 0.97006 * 119.99745 * 179.97438 * 22 21 19 40 40 H 1.09004 * 109.87934 * 59.56381 * 27 9 7 41 41 H 1.08996 * 110.01449 * 298.46920 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2981 1.0779 0.0000 4 6 3.5452 0.6899 -0.0059 5 8 3.5890 -0.6460 -0.0038 6 6 2.3137 -1.0992 0.0031 7 6 1.8827 -2.5016 0.0081 8 8 0.6967 -2.7736 0.0137 9 7 2.8005 -3.4887 0.0065 10 6 4.2628 -3.3021 0.0007 11 6 4.8307 -4.6111 -0.6079 12 6 3.8623 -5.6710 -0.0194 13 1 4.1683 -5.9563 0.9870 14 7 3.7897 -6.8469 -0.8901 15 6 3.3973 -8.0343 -0.3875 16 8 3.1047 -8.1293 0.7857 17 6 3.3221 -9.2438 -1.2833 18 16 2.7667 -10.6731 -0.3217 19 6 2.7700 -11.9076 -1.5789 20 1 3.0623 -11.6515 -2.5866 21 6 2.3958 -13.2092 -1.2745 22 7 2.3978 -14.1313 -2.2138 23 14 1.8895 -13.6521 0.4682 24 1 0.4252 -13.4591 0.6225 25 1 2.6081 -12.7779 1.4298 26 1 2.2328 -15.0716 0.7378 27 6 2.5090 -4.9297 0.0115 28 1 -0.3633 0.0034 1.0278 29 1 -0.3633 0.8882 -0.5167 30 1 -0.3633 -0.8916 -0.5108 31 1 4.4044 1.3444 -0.0111 32 1 4.5337 -2.4463 -0.6177 33 1 4.6320 -3.1665 1.0174 34 1 5.8533 -4.7887 -0.2749 35 1 4.7737 -4.5914 -1.6962 36 1 4.0240 -6.7709 -1.8283 37 1 4.3076 -9.4477 -1.7019 38 1 2.6161 -9.0538 -2.0918 39 1 2.1366 -15.0410 -2.0009 40 1 1.9225 -5.1923 -0.8690 41 1 1.9606 -5.1962 0.9150 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001294702049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:23 Heat of formation + Delta-G solvation = -69.057085 kcal Electronic energy + Delta-G solvation = -26009.658950 eV Core-core repulsion = 22016.674401 eV Total energy + Delta-G solvation = -3992.984549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.51350 -41.43107 -40.46706 -38.66845 -36.43326 -35.38389 -34.66793 -32.88942 -32.23788 -30.81480 -29.77001 -28.49584 -27.83317 -25.55777 -23.99404 -22.95452 -22.33632 -21.75305 -21.01465 -19.92168 -18.87472 -18.28122 -17.94936 -17.76481 -17.41916 -17.13722 -16.98132 -16.54810 -16.36566 -15.74784 -15.66896 -15.25100 -14.93767 -14.72621 -14.56929 -14.36655 -14.21651 -13.96716 -13.83076 -13.49352 -13.34934 -13.27011 -13.04880 -13.00180 -12.75079 -12.60067 -12.19859 -12.04627 -11.87280 -11.82882 -11.40007 -11.17250 -11.05306 -10.53112 -10.31624 -10.24288 -9.79665 -8.99221 -8.51508 -6.21958 -0.30410 0.97660 1.22032 1.31571 1.35987 1.46234 1.51658 1.54340 1.81162 1.86289 2.23267 2.27358 2.71586 2.86854 3.11485 3.25671 3.37434 3.61661 3.64882 3.84921 3.98682 4.07189 4.21637 4.25150 4.33063 4.37901 4.48374 4.53380 4.62201 4.66629 4.70004 4.77382 4.90470 4.97580 5.00851 5.09090 5.27211 5.38528 5.70836 6.09631 6.11856 6.41091 6.47404 6.72557 6.93880 7.14603 8.60688 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029423 B = 0.001960 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.418911 B =14284.466147 C =14743.226575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.074 3.926 3 N -0.527 5.527 4 C 0.233 3.767 5 O -0.184 6.184 6 C -0.130 4.130 7 C 0.615 3.385 8 O -0.551 6.551 9 N -0.606 5.606 10 C 0.097 3.903 11 C -0.121 4.121 12 C 0.139 3.861 13 H 0.099 0.901 14 N -0.702 5.702 15 C 0.539 3.461 16 O -0.557 6.557 17 C -0.112 4.112 18 S -0.178 6.178 19 C -0.528 4.528 20 H 0.064 0.936 21 C 0.044 3.956 22 N -0.916 5.916 23 Si 0.914 3.086 24 H -0.265 1.265 25 H -0.236 1.236 26 H -0.260 1.260 27 C 0.098 3.902 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.311 0.689 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.124 0.876 35 H 0.102 0.898 36 H 0.421 0.579 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.277 0.723 40 H 0.068 0.932 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.101 33.387 2.286 34.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.049 4.049 3 N -0.256 5.256 4 C 0.008 3.992 5 O -0.070 6.070 6 C -0.185 4.185 7 C 0.404 3.596 8 O -0.431 6.431 9 N -0.339 5.339 10 C -0.024 4.024 11 C -0.159 4.159 12 C 0.033 3.967 13 H 0.117 0.883 14 N -0.356 5.356 15 C 0.324 3.676 16 O -0.435 6.435 17 C -0.263 4.263 18 S 0.049 5.951 19 C -0.675 4.675 20 H 0.082 0.918 21 C -0.161 4.161 22 N -0.554 5.554 23 Si 0.736 3.264 24 H -0.190 1.190 25 H -0.159 1.159 26 H -0.184 1.184 27 C -0.026 4.026 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.326 0.674 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.142 0.858 35 H 0.120 0.880 36 H 0.259 0.741 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.798 33.527 4.160 34.672 hybrid contribution 0.044 -1.323 -1.391 1.920 sum 7.843 32.204 2.769 33.260 Atomic orbital electron populations 1.20395 0.85275 1.04285 1.04019 1.22295 0.98971 0.86856 0.96818 1.70415 1.02733 1.31291 1.21179 1.29663 0.98121 0.79197 0.92183 1.84570 1.27980 1.25096 1.69400 1.22321 0.82565 0.94857 1.18796 1.16188 0.84565 0.81782 0.77045 1.90873 1.16942 1.82441 1.52838 1.48288 1.08482 1.05581 1.71512 1.22764 0.76770 0.99687 1.03226 1.23165 0.99877 0.90395 1.02448 1.21932 0.93565 0.84827 0.96385 0.88329 1.45637 1.68811 1.06792 1.14337 1.19998 0.75581 0.84370 0.87607 1.90713 1.48941 1.85351 1.18465 1.23276 1.06978 0.94320 1.01706 1.84744 1.89041 1.03542 1.17779 1.22460 1.52155 0.96206 0.96704 0.91819 1.25567 0.93881 0.95252 1.01395 1.70018 1.47218 1.03338 1.34866 0.85875 0.80244 0.79569 0.80725 1.18953 1.15941 1.18381 1.22364 0.98912 0.79210 1.02155 0.89568 0.89139 0.90105 0.67398 0.87715 0.89262 0.85814 0.87995 0.74055 0.86284 0.86908 0.91407 0.91378 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 9.87 71.24 0.70 -0.77 16 2 C 0.07 1.42 7.16 41.83 0.30 1.71 16 3 N -0.53 -8.22 11.26 -303.12 -3.41 -11.63 16 4 C 0.23 1.65 13.21 130.42 1.72 3.37 16 5 O -0.18 -2.07 8.07 -7.08 -0.06 -2.13 16 6 C -0.13 -2.44 6.96 24.04 0.17 -2.27 16 7 C 0.62 14.34 7.82 86.46 0.68 15.02 16 8 O -0.55 -16.70 15.12 -4.31 -0.07 -16.76 16 9 N -0.61 -11.39 3.33 -816.00 -2.72 -14.10 16 10 C 0.10 0.95 6.19 86.93 0.54 1.49 16 11 C -0.12 -0.92 6.73 32.06 0.22 -0.71 16 12 C 0.14 2.37 3.27 46.18 0.15 2.52 16 13 H 0.10 1.99 7.62 -2.39 -0.02 1.98 16 14 N -0.70 -13.75 5.12 -436.90 -2.24 -15.99 16 15 C 0.54 16.85 7.85 87.66 0.69 17.54 16 16 O -0.56 -22.31 15.55 -3.04 -0.05 -22.36 16 17 C -0.11 -3.95 6.16 71.24 0.44 -3.51 16 18 S -0.18 -8.77 18.55 -56.49 -1.05 -9.82 16 19 C -0.53 -30.28 10.04 67.95 0.68 -29.60 16 20 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 21 C 0.04 2.59 5.50 84.86 0.47 3.06 16 22 N -0.92 -55.49 13.97 21.65 0.30 -55.19 16 23 Si 0.91 44.83 27.74 68.60 1.90 46.74 16 24 H -0.26 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.24 -11.48 6.74 99.48 0.67 -10.81 16 26 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 27 C 0.10 2.13 6.63 86.73 0.57 2.70 16 28 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.69 6.47 -2.39 -0.02 1.67 16 31 H 0.31 -1.89 8.06 -2.91 -0.02 -1.91 16 32 H 0.10 0.74 6.25 -2.39 -0.01 0.73 16 33 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.10 0.53 8.00 -2.39 -0.02 0.51 16 36 H 0.42 5.38 8.54 -92.71 -0.79 4.59 16 37 H 0.12 3.75 8.14 -2.40 -0.02 3.73 16 38 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 39 H 0.28 15.50 8.31 -92.70 -0.77 14.73 16 40 H 0.07 1.63 8.03 -2.38 -0.02 1.61 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -84.57 363.32 0.20 -84.37 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 0.25 Total: 6.31 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 7.32 Total: 10.56 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -8.06 Total: -96.91 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -0.17 Total: -41.25 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.90 Total: 46.74 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.05 Total: -9.82 kcal Total: -84.57 0.20 -84.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001294702049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.309 kcal (2) G-P(sol) polarization free energy of solvation -84.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds