Wall clock time and date at job start Tue Mar 31 2020 22:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41264 * 126.70466 * 2 1 4 4 C 1.36828 * 103.84404 * 179.97438 * 3 2 1 5 5 C 1.47516 * 126.94124 * 179.97438 * 4 3 2 6 6 O 1.21582 * 120.00013 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00016 * 180.02562 * 5 4 3 8 8 C 1.47421 * 125.64552 * 359.95953 * 7 5 4 9 9 C 1.55129 * 104.94200 * 204.03909 * 8 7 5 10 10 C 1.55160 * 101.48203 * 323.22143 * 9 8 7 11 11 H 1.09005 * 110.71700 * 276.82626 * 10 9 8 12 12 N 1.46500 * 110.71750 * 153.73243 * 10 9 8 13 13 C 1.34776 * 119.99472 * 157.43870 * 12 10 9 14 14 O 1.21280 * 120.00458 * 359.97438 * 13 12 10 15 15 C 1.50702 * 119.99564 * 180.02562 * 13 12 10 16 16 S 1.81008 * 109.46925 * 180.02562 * 15 13 12 17 17 C 1.76202 * 99.99767 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00286 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99642 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00322 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99881 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47261 * 239.99700 * 21 19 17 24 24 H 1.48500 * 109.47454 * 119.99693 * 21 19 17 25 25 C 1.47019 * 125.65083 * 179.97438 * 7 5 4 26 26 O 1.34640 * 106.11241 * 0.24180 * 4 3 2 27 27 N 1.20880 * 111.46959 * 359.56884 * 26 4 3 28 28 H 1.09007 * 109.47320 * 89.99472 * 1 2 3 29 29 H 1.08995 * 109.47307 * 209.99609 * 1 2 3 30 30 H 1.08999 * 109.47282 * 329.99983 * 1 2 3 31 31 H 1.07998 * 128.07613 * 359.96450 * 3 2 1 32 32 H 1.09002 * 110.36964 * 322.99752 * 8 7 5 33 33 H 1.08997 * 110.37342 * 85.21777 * 8 7 5 34 34 H 1.08994 * 111.16466 * 205.12818 * 9 8 7 35 35 H 1.08997 * 110.93421 * 81.21046 * 9 8 7 36 36 H 0.96999 * 120.00150 * 337.44498 * 12 10 9 37 37 H 1.08998 * 109.47573 * 60.00437 * 15 13 12 38 38 H 1.09000 * 109.46955 * 299.99406 * 15 13 12 39 39 H 0.97004 * 120.00251 * 0.02562 * 20 19 17 40 40 H 1.08998 * 109.87981 * 59.48668 * 25 7 5 41 41 H 1.09005 * 110.00808 * 298.39621 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6121 0.6010 0.0006 5 6 4.8870 1.3430 0.0003 6 8 4.8828 2.5588 -0.0010 7 7 6.0566 0.6732 0.0005 8 6 6.2067 -0.7934 0.0017 9 6 7.6094 -1.0514 0.6120 10 6 8.4228 0.1342 0.0287 11 1 8.7719 -0.0960 -0.9780 12 7 9.5501 0.4689 0.9024 13 6 10.6183 1.1221 0.4036 14 8 10.6466 1.4323 -0.7685 15 6 11.7782 1.4659 1.3023 16 16 13.0458 2.3344 0.3456 17 6 14.2466 2.6074 1.6058 18 1 14.0622 2.2607 2.6118 19 6 15.4297 3.2683 1.3055 20 7 15.6549 3.6905 0.0793 21 14 16.7031 3.5572 2.6413 22 1 16.2134 2.9896 3.9232 23 1 16.9307 5.0159 2.8012 24 1 17.9776 2.8962 2.2617 25 6 7.3939 1.2839 -0.0003 26 8 3.4539 -0.7361 -0.0046 27 7 2.2848 -1.0433 0.0005 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3634 0.8900 0.5138 31 1 2.0678 2.1747 -0.0005 32 1 5.4337 -1.2534 0.6175 33 1 6.1602 -1.1805 -1.0161 34 1 8.0149 -2.0059 0.2767 35 1 7.5753 -1.0038 1.7004 36 1 9.5277 0.2204 1.8397 37 1 12.1997 0.5507 1.7179 38 1 11.4321 2.1074 2.1127 39 1 14.9938 3.5402 -0.6145 40 1 7.5150 1.9119 0.8823 41 1 7.5305 1.8814 -0.9018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295000737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:42 Heat of formation + Delta-G solvation = -6.785528 kcal Electronic energy + Delta-G solvation = -25758.753491 eV Core-core repulsion = 21768.469240 eV Total energy + Delta-G solvation = -3990.284252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.49915 -40.62503 -39.36103 -37.73831 -35.42628 -34.37681 -32.63447 -32.55372 -31.25891 -29.79882 -29.24875 -28.28439 -25.23995 -24.79885 -23.61114 -22.69743 -21.60657 -20.56729 -20.02438 -18.47723 -18.32208 -18.19400 -17.16053 -16.85536 -16.43877 -16.23179 -15.64114 -15.18062 -14.68644 -14.48921 -14.21305 -13.95373 -13.87695 -13.85907 -13.65423 -13.55788 -13.40397 -13.15479 -12.86426 -12.51446 -12.38136 -12.31886 -11.91174 -11.84673 -11.80682 -11.26756 -10.91764 -10.78351 -10.61746 -10.22315 -10.21667 -9.66498 -9.60666 -9.26502 -9.14068 -9.02675 -8.25657 -6.70427 -6.64683 -4.03118 0.32110 1.53500 1.99018 2.50548 2.55191 2.84022 2.87896 3.33081 3.39186 3.46044 3.53664 3.54806 3.76676 3.99537 4.17463 4.22223 4.42485 4.50335 4.59904 4.75009 4.81969 4.88081 4.92859 4.99106 5.05533 5.16789 5.19109 5.20136 5.34756 5.38225 5.43548 5.51325 5.61145 5.63557 5.70666 5.78310 5.96020 6.37792 6.81237 7.36832 7.45893 7.63052 7.90619 8.37151 8.47818 9.24376 10.79371 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.037031 B = 0.001771 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.940858 B =15803.433618 C =16036.043270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.012 3.988 3 C -0.150 4.150 4 C -0.077 4.077 5 C 0.617 3.383 6 O -0.507 6.507 7 N -0.604 5.604 8 C 0.095 3.905 9 C -0.138 4.138 10 C 0.138 3.862 11 H 0.110 0.890 12 N -0.729 5.729 13 C 0.533 3.467 14 O -0.512 6.512 15 C -0.132 4.132 16 S -0.115 6.115 17 C -0.608 4.608 18 H 0.067 0.933 19 C 0.036 3.964 20 N -0.884 5.884 21 Si 1.090 2.910 22 H -0.288 1.288 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.095 3.905 26 O 0.117 5.883 27 N -0.347 5.347 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.185 0.815 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.402 0.598 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.278 0.722 40 H 0.080 0.920 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.836 -12.163 2.891 31.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.146 4.146 3 C -0.172 4.172 4 C -0.143 4.143 5 C 0.403 3.597 6 O -0.382 6.382 7 N -0.338 5.338 8 C -0.028 4.028 9 C -0.176 4.176 10 C 0.032 3.968 11 H 0.128 0.872 12 N -0.383 5.383 13 C 0.319 3.681 14 O -0.386 6.386 15 C -0.283 4.283 16 S 0.111 5.889 17 C -0.756 4.756 18 H 0.085 0.915 19 C -0.175 4.175 20 N -0.519 5.519 21 Si 0.916 3.084 22 H -0.214 1.214 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.028 4.028 26 O 0.044 5.956 27 N -0.049 5.049 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.202 0.798 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.237 0.763 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -27.587 -11.574 1.195 29.940 hybrid contribution -1.621 -0.377 1.709 2.386 sum -29.208 -11.951 2.904 31.691 Atomic orbital electron populations 1.20229 0.85116 1.04256 1.03847 1.23676 0.99476 0.88204 1.03211 1.22896 0.89846 1.01892 1.02610 1.24122 0.97027 0.84008 1.09098 1.16109 0.80075 0.85674 0.77888 1.90921 1.85490 1.11579 1.50195 1.48243 1.05485 1.08259 1.71774 1.22584 0.98092 0.79686 1.02411 1.23136 0.93660 0.99134 1.01692 1.21860 0.85676 0.92580 0.96723 0.87197 1.45934 1.17920 1.61225 1.13231 1.20378 0.82636 0.76389 0.88682 1.90721 1.79753 1.51166 1.16940 1.23320 0.97848 1.04810 1.02291 1.84845 1.14664 1.72894 1.16502 1.23761 1.06633 1.48041 0.97200 0.91482 1.26057 0.97887 0.92671 1.00892 1.70740 1.37606 1.41810 1.01709 0.83246 0.74823 0.76905 0.73391 1.21401 1.20874 1.20869 1.22567 0.79545 0.96597 1.04128 1.85043 1.21337 1.22105 1.67073 1.73734 0.89390 1.24392 1.17416 0.89745 0.90167 0.89576 0.79803 0.89164 0.89921 0.88303 0.89570 0.76283 0.88782 0.88806 0.90916 0.90125 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.47 36.00 0.38 0.06 16 2 C 0.01 0.09 7.31 -82.17 -0.60 -0.51 16 3 C -0.15 -1.22 10.92 -38.94 -0.43 -1.65 16 4 C -0.08 -0.72 7.06 -36.31 -0.26 -0.98 16 5 C 0.62 6.96 7.85 -12.48 -0.10 6.86 16 6 O -0.51 -7.39 17.24 5.29 0.09 -7.30 16 7 N -0.60 -5.84 3.33 -171.62 -0.57 -6.42 16 8 C 0.10 0.62 6.21 -2.41 -0.01 0.61 16 9 C -0.14 -0.82 6.73 -24.46 -0.16 -0.98 16 10 C 0.14 1.34 3.27 -66.10 -0.22 1.13 16 11 H 0.11 1.22 7.62 -51.93 -0.40 0.82 16 12 N -0.73 -8.25 5.12 -52.03 -0.27 -8.51 16 13 C 0.53 9.06 7.85 -10.98 -0.09 8.97 16 14 O -0.51 -10.77 15.55 5.56 0.09 -10.69 16 15 C -0.13 -2.52 6.16 36.01 0.22 -2.29 16 16 S -0.12 -3.03 19.60 -107.50 -2.11 -5.14 16 17 C -0.61 -17.29 9.50 30.94 0.29 -17.00 16 18 H 0.07 1.83 7.80 -52.49 -0.41 1.42 16 19 C 0.04 1.02 5.49 -17.43 -0.10 0.93 16 20 N -0.88 -27.32 13.67 55.49 0.76 -26.56 16 21 Si 1.09 24.82 29.92 -169.99 -5.09 19.74 16 22 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 C 0.09 1.04 6.62 -3.07 -0.02 1.02 16 26 O 0.12 1.04 8.58 15.56 0.13 1.18 16 27 N -0.35 -3.24 12.04 33.52 0.40 -2.84 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.09 0.52 6.28 -51.93 -0.33 0.19 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.43 8.00 -51.93 -0.42 0.02 16 36 H 0.40 3.36 8.54 -40.82 -0.35 3.02 16 37 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 38 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 39 H 0.28 8.77 7.13 -40.82 -0.29 8.48 16 40 H 0.08 0.96 8.03 -51.93 -0.42 0.54 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 368.37 15.07 5.55 5.55 Total: -1.00 -37.05 368.37 -7.29 -44.34 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.20 Total: 0.48 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -1.09 Total: -3.83 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.32 Total: -44.33 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: 0.31 Total: -16.81 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.09 Total: 19.74 kcal Atomic # 16 Polarization: -3.03 SS G_CDS: -2.11 Total: -5.14 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.05 -7.29 -44.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295000737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.556 kcal (2) G-P(sol) polarization free energy of solvation -37.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds