Wall clock time and date at job start Tue Mar 31 2020 22:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35318 * 128.03404 * 2 1 4 4 O 1.34020 * 106.66626 * 179.97438 * 3 2 1 5 5 N 1.20906 * 111.84546 * 359.97438 * 4 3 2 6 6 C 1.30983 * 111.44031 * 359.75335 * 5 4 3 7 7 C 1.48337 * 126.94134 * 180.26791 * 6 5 4 8 8 O 1.21490 * 120.00039 * 180.14020 * 7 6 5 9 9 N 1.34778 * 119.99691 * 0.13744 * 7 6 5 10 10 C 1.46502 * 119.99793 * 179.97438 * 9 7 6 11 11 H 1.08997 * 112.84609 * 46.03310 * 10 9 7 12 12 C 1.53784 * 113.60887 * 177.33359 * 10 9 7 13 13 C 1.53781 * 87.07997 * 89.12054 * 12 10 9 14 14 H 1.08999 * 113.69288 * 139.98758 * 13 12 10 15 15 N 1.46503 * 113.61107 * 270.87908 * 13 12 10 16 16 C 1.34773 * 119.99906 * 255.63671 * 15 13 12 17 17 O 1.21282 * 120.00181 * 0.02562 * 16 15 13 18 18 C 1.50704 * 120.00111 * 180.02562 * 16 15 13 19 19 S 1.80993 * 109.47128 * 180.02562 * 18 16 15 20 20 C 1.76206 * 99.99734 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00045 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99976 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99999 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00203 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46980 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47153 * 119.99852 * 24 22 20 27 27 H 1.48498 * 109.47394 * 240.00292 * 24 22 20 28 28 C 1.53782 * 87.08501 * 25.42814 * 13 12 10 29 29 H 1.09001 * 109.47101 * 90.02800 * 1 2 3 30 30 H 1.08994 * 109.47388 * 330.02496 * 1 2 3 31 31 H 1.09007 * 109.47039 * 210.02423 * 1 2 3 32 32 H 1.07992 * 126.66458 * 359.97438 * 3 2 1 33 33 H 0.97003 * 119.99902 * 0.02562 * 9 7 6 34 34 H 1.09001 * 113.61196 * 203.66464 * 12 10 9 35 35 H 1.08996 * 113.62029 * 334.56832 * 12 10 9 36 36 H 0.96999 * 120.00032 * 75.64802 * 15 13 12 37 37 H 1.08999 * 109.47089 * 300.00479 * 18 16 15 38 38 H 1.09003 * 109.46385 * 60.00204 * 18 16 15 39 39 H 0.96998 * 119.99977 * 179.97438 * 23 22 20 40 40 H 1.08994 * 113.61751 * 220.02252 * 28 13 12 41 41 H 1.08996 * 113.61189 * 89.11222 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0658 0.0000 4 8 3.5888 0.5775 0.0006 5 7 3.5989 -0.6315 0.0014 6 6 2.3838 -1.1204 0.0068 7 6 1.9993 -2.5531 0.0149 8 8 0.8257 -2.8671 0.0167 9 7 2.9520 -3.5064 0.0203 10 6 2.5723 -4.9213 0.0289 11 1 1.7888 -5.1537 -0.6923 12 6 3.7721 -5.8814 -0.0313 13 6 3.7953 -5.8234 1.5052 14 1 3.9998 -6.7846 1.9768 15 7 4.6244 -4.7399 2.0391 16 6 5.8337 -5.0142 2.5669 17 8 6.2359 -6.1579 2.5995 18 6 6.6864 -3.8997 3.1166 19 16 8.2387 -4.5831 3.7482 20 6 9.0159 -3.1060 4.3129 21 1 8.5124 -2.1565 4.2070 22 6 10.2752 -3.1628 4.8939 23 7 10.8891 -4.3201 5.0225 24 14 11.0994 -1.5968 5.4919 25 1 10.2075 -0.4380 5.2331 26 1 11.3633 -1.7018 6.9495 27 1 12.3825 -1.4055 4.7691 28 6 2.2985 -5.4771 1.4365 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 0.8901 0.5134 31 1 -0.3633 -0.8898 0.5142 32 1 2.0558 2.1075 -0.0004 33 1 3.8891 -3.2556 0.0192 34 1 3.5239 -6.8661 -0.4273 35 1 4.6561 -5.4469 -0.4980 36 1 4.3028 -3.8251 2.0129 37 1 6.9012 -3.1822 2.3247 38 1 6.1534 -3.3997 3.9253 39 1 11.7693 -4.3597 5.4281 40 1 1.9929 -4.7162 2.1545 41 1 1.6475 -6.3513 1.4416 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001295167019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:45 Heat of formation + Delta-G solvation = -12.273194 kcal Electronic energy + Delta-G solvation = -26440.475586 eV Core-core repulsion = 22449.953371 eV Total energy + Delta-G solvation = -3990.522215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.15069 -41.84516 -40.47744 -39.08714 -35.70422 -35.10962 -34.60429 -34.13168 -33.02657 -30.71548 -29.13623 -27.71040 -26.91000 -26.63668 -24.72415 -22.69930 -22.41232 -21.44763 -20.88552 -19.82774 -19.35231 -18.85006 -18.12359 -17.57653 -17.25888 -17.05648 -16.89616 -16.66863 -16.27205 -15.94825 -15.69664 -15.41659 -14.92028 -14.69462 -14.48399 -14.23071 -14.11483 -14.01732 -13.45843 -13.36622 -13.33223 -13.18193 -13.03265 -12.92560 -12.60794 -12.39384 -12.15349 -11.75367 -11.55915 -11.42816 -11.34271 -11.17407 -11.02981 -10.41503 -10.36331 -10.31348 -10.11343 -8.69065 -8.36711 -6.14888 0.02269 0.69707 1.23152 1.40394 1.43968 1.50537 1.56132 1.69746 1.94302 2.17187 2.25187 2.26783 2.82886 2.97580 3.27671 3.29374 3.44142 3.56275 3.73383 3.88826 3.89922 4.04363 4.07636 4.22443 4.42723 4.43534 4.55643 4.70739 4.72523 4.78053 4.78609 4.81439 4.91757 4.93109 4.95600 5.19250 5.33724 5.40357 5.55006 6.11997 6.18231 6.34401 6.78858 7.02291 7.04804 7.12810 8.72770 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010634 B = 0.003000 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.427614 B = 9332.088398 C =11649.355551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.172 4.172 3 C -0.038 4.038 4 O 0.125 5.875 5 N -0.351 5.351 6 C -0.059 4.059 7 C 0.602 3.398 8 O -0.537 6.537 9 N -0.698 5.698 10 C 0.122 3.878 11 H 0.109 0.891 12 C -0.143 4.143 13 C 0.106 3.894 14 H 0.093 0.907 15 N -0.701 5.701 16 C 0.539 3.461 17 O -0.555 6.555 18 C -0.133 4.133 19 S -0.142 6.142 20 C -0.547 4.547 21 H 0.081 0.919 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.999 3.001 25 H -0.258 1.258 26 H -0.273 1.273 27 H -0.272 1.272 28 C -0.139 4.139 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.273 0.727 33 H 0.408 0.592 34 H 0.135 0.865 35 H 0.071 0.929 36 H 0.405 0.595 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.272 0.728 40 H 0.067 0.933 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.303 10.797 -13.410 29.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.178 4.178 3 C -0.118 4.118 4 O 0.049 5.951 5 N -0.051 5.051 6 C -0.216 4.216 7 C 0.387 3.613 8 O -0.413 6.413 9 N -0.351 5.351 10 C 0.017 3.983 11 H 0.127 0.873 12 C -0.181 4.181 13 C 0.000 4.000 14 H 0.111 0.889 15 N -0.355 5.355 16 C 0.325 3.675 17 O -0.432 6.432 18 C -0.284 4.284 19 S 0.085 5.915 20 C -0.695 4.695 21 H 0.099 0.901 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.181 1.181 26 H -0.198 1.198 27 H -0.198 1.198 28 C -0.178 4.178 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.289 0.711 33 H 0.245 0.755 34 H 0.153 0.847 35 H 0.089 0.911 36 H 0.241 0.759 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -23.147 7.905 -13.311 27.848 hybrid contribution -0.011 2.460 0.452 2.501 sum -23.159 10.366 -12.860 28.445 Atomic orbital electron populations 1.20227 0.85470 1.04179 1.03568 1.21704 1.00045 0.89871 1.06158 1.26706 0.80493 1.02889 1.01716 1.84771 1.30977 1.14469 1.64926 1.74226 1.21825 0.92746 1.16329 1.23576 0.90587 0.97181 1.10301 1.16999 0.85327 0.82845 0.76150 1.90763 1.18027 1.82096 1.50386 1.45781 1.09771 1.05909 1.73613 1.22068 0.98745 0.78764 0.98684 0.87294 1.23767 0.97417 1.01362 0.95593 1.22123 0.91247 0.91386 0.95223 0.88876 1.45615 1.16838 1.11215 1.61820 1.20020 0.81739 0.89137 0.76607 1.90691 1.72330 1.23266 1.56943 1.23387 0.99887 1.00671 1.04458 1.85514 1.13241 1.14980 1.77771 1.23226 1.05911 0.94070 1.46292 0.90123 1.26125 0.96785 1.01098 0.95077 1.70181 1.15088 1.26785 1.42644 0.84906 0.77989 0.77151 0.77915 1.18130 1.19847 1.19776 1.23739 0.94547 1.02907 0.96619 0.90088 0.88184 0.91721 0.71141 0.75501 0.84745 0.91058 0.75869 0.87452 0.87755 0.91927 0.91398 0.84941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.02 71.24 0.71 -0.16 16 2 C -0.17 -2.55 6.34 -19.53 -0.12 -2.67 16 3 C -0.04 -0.35 12.24 67.15 0.82 0.47 16 4 O 0.13 2.05 11.18 71.85 0.80 2.85 16 5 N -0.35 -7.36 11.84 -49.51 -0.59 -7.95 16 6 C -0.06 -1.20 7.19 42.96 0.31 -0.89 16 7 C 0.60 13.26 7.85 86.93 0.68 13.94 16 8 O -0.54 -13.68 15.27 -3.68 -0.06 -13.74 16 9 N -0.70 -13.27 4.34 -442.43 -1.92 -15.19 16 10 C 0.12 1.99 4.00 45.52 0.18 2.17 16 11 H 0.11 1.66 8.04 -2.39 -0.02 1.64 16 12 C -0.14 -2.39 7.57 31.12 0.24 -2.15 16 13 C 0.11 2.29 4.28 45.52 0.19 2.49 16 14 H 0.09 2.35 7.54 -2.39 -0.02 2.34 16 15 N -0.70 -18.51 4.96 -440.03 -2.18 -20.69 16 16 C 0.54 20.10 7.85 87.66 0.69 20.79 16 17 O -0.56 -25.40 15.50 -3.04 -0.05 -25.45 16 18 C -0.13 -5.41 6.16 71.24 0.44 -4.97 16 19 S -0.14 -7.95 20.57 -56.49 -1.16 -9.11 16 20 C -0.55 -31.54 9.50 67.95 0.65 -30.89 16 21 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 22 C 0.01 0.80 5.49 84.86 0.47 1.27 16 23 N -0.91 -56.06 13.22 21.65 0.29 -55.77 16 24 Si 1.00 43.82 29.55 68.60 2.03 45.85 16 25 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 28 C -0.14 -2.29 7.62 31.12 0.24 -2.05 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 1.05 6.87 -2.38 -0.02 1.03 16 32 H 0.27 -0.55 8.06 -2.91 -0.02 -0.57 16 33 H 0.41 7.84 7.58 -92.71 -0.70 7.14 16 34 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.38 8.13 -2.39 -0.02 1.36 16 36 H 0.40 9.23 7.19 -92.71 -0.67 8.56 16 37 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 38 H 0.10 3.92 8.14 -2.39 -0.02 3.90 16 39 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 40 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -81.78 370.38 2.38 -79.40 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -0.27 Total: 22.46 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 5.49 Total: -2.67 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -4.40 Total: -99.60 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: 0.70 Total: -36.34 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.16 Total: -9.11 kcal Total: -81.78 2.38 -79.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295167019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.129 kcal (2) G-P(sol) polarization free energy of solvation -81.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds