Wall clock time and date at job start Tue Mar 31 2020 22:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29930 * 125.37725 * 2 1 4 4 C 1.36071 * 108.47420 * 180.12576 * 3 2 1 5 5 C 1.47416 * 126.44788 * 179.82159 * 4 3 2 6 6 O 1.21618 * 120.00106 * 179.97438 * 5 4 3 7 7 N 1.34785 * 120.00187 * 359.69261 * 5 4 3 8 8 C 1.46498 * 120.00221 * 179.97438 * 7 5 4 9 9 H 1.09003 * 112.84792 * 333.06236 * 8 7 5 10 10 C 1.53784 * 113.61092 * 104.36423 * 8 7 5 11 11 C 1.53778 * 87.08170 * 89.12015 * 10 8 7 12 12 H 1.08997 * 113.69189 * 139.99208 * 11 10 8 13 13 N 1.46503 * 113.61204 * 270.88731 * 11 10 8 14 14 C 1.34776 * 119.99907 * 182.67240 * 13 11 10 15 15 O 1.21280 * 119.99882 * 359.97438 * 14 13 11 16 16 C 1.50701 * 119.99838 * 179.97438 * 14 13 11 17 17 S 1.80999 * 109.47082 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00066 * 179.97438 * 17 16 14 19 19 H 1.07993 * 120.00067 * 0.02562 * 18 17 16 20 20 C 1.38801 * 119.99762 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00524 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99653 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47071 * 60.00490 * 22 20 18 24 24 H 1.48500 * 109.47082 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47124 * 300.00455 * 22 20 18 26 26 C 1.53772 * 113.61779 * 201.86181 * 8 7 5 27 27 C 1.36090 * 107.10163 * 359.56426 * 4 3 2 28 28 O 1.34045 * 125.37577 * 179.63641 * 2 1 3 29 29 H 1.08998 * 109.47115 * 180.34102 * 1 2 3 30 30 H 1.08997 * 109.47003 * 300.34430 * 1 2 3 31 31 H 1.09000 * 109.46949 * 60.33787 * 1 2 3 32 32 H 0.96996 * 119.99653 * 359.97438 * 7 5 4 33 33 H 1.09006 * 113.61058 * 203.66633 * 10 8 7 34 34 H 1.09000 * 113.61839 * 334.56861 * 10 8 7 35 35 H 0.96995 * 119.99836 * 2.66342 * 13 11 10 36 36 H 1.09001 * 109.47444 * 299.99362 * 16 14 13 37 37 H 1.09003 * 109.47061 * 59.99740 * 16 14 13 38 38 H 0.96992 * 120.00285 * 179.97438 * 21 20 18 39 39 H 1.09003 * 113.61383 * 25.43565 * 26 8 7 40 40 H 1.09002 * 113.62035 * 156.33658 * 26 8 7 41 41 H 1.07998 * 126.52379 * 180.25836 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 -0.0028 5 6 4.7439 1.5437 -0.0075 6 8 5.8605 1.0617 -0.0092 7 7 4.5879 2.8825 -0.0157 8 6 5.7632 3.7569 -0.0197 9 1 6.6369 3.2939 0.4389 10 6 6.0500 4.3969 -1.3884 11 6 5.1283 5.5490 -0.9548 12 1 5.4890 6.5338 -1.2516 13 7 3.7196 5.3330 -1.2941 14 6 2.8069 6.2864 -1.0214 15 8 3.1518 7.3230 -0.4947 16 6 1.3579 6.0644 -1.3710 17 16 0.3906 7.5143 -0.8830 18 6 -1.2146 6.9972 -1.3936 19 1 -1.3493 6.0294 -1.8535 20 6 -2.3061 7.8333 -1.2037 21 7 -2.1421 9.0127 -0.6427 22 14 -4.0079 7.2848 -1.7443 23 1 -4.3793 6.0407 -1.0233 24 1 -4.9938 8.3508 -1.4330 25 1 -4.0036 7.0268 -3.2067 26 6 5.4765 5.1769 0.4962 27 6 3.5659 -0.6971 0.0053 28 8 2.2831 -1.0929 0.0069 29 1 -0.3633 -1.0276 0.0061 30 1 -0.3633 0.5192 0.8869 31 1 -0.3633 0.5086 -0.8930 32 1 3.6974 3.2669 -0.0188 33 1 7.0898 4.6960 -1.5212 34 1 5.6634 3.8212 -2.2293 35 1 3.4439 4.5038 -1.7151 36 1 1.2631 5.9090 -2.4457 37 1 0.9872 5.1861 -0.8426 38 1 -2.9048 9.5971 -0.5103 39 1 4.6267 5.2308 1.1767 40 1 6.3593 5.6892 0.8785 41 1 4.4361 -1.3368 0.0096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295167214.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:16 Heat of formation + Delta-G solvation = -26.422970 kcal Electronic energy + Delta-G solvation = -26441.137751 eV Core-core repulsion = 22450.001956 eV Total energy + Delta-G solvation = -3991.135795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.77543 -40.76881 -39.21065 -37.82847 -35.27540 -33.78291 -32.77863 -32.43447 -32.37076 -29.11870 -28.22595 -26.02717 -25.63018 -25.38923 -23.57900 -21.95466 -21.10317 -20.26442 -19.79560 -18.46220 -17.82826 -17.26599 -16.93649 -16.42240 -16.22035 -15.86542 -15.57716 -14.99918 -14.81489 -14.77678 -14.49226 -14.19694 -14.09157 -13.81798 -13.47208 -13.20418 -12.90230 -12.78669 -12.72843 -12.56131 -12.06802 -11.95210 -11.59962 -11.16034 -11.09740 -11.05099 -11.04222 -10.79082 -10.59092 -10.49246 -9.83062 -9.48087 -9.41164 -9.24704 -9.06809 -8.90187 -8.24354 -6.50140 -6.21947 -3.92390 0.75129 1.65361 2.21540 2.71771 2.96854 3.01760 3.05659 3.22314 3.26509 3.29428 3.51975 3.68991 4.19662 4.21247 4.33703 4.41157 4.44975 4.63758 4.91624 4.92944 5.07307 5.12703 5.13152 5.14305 5.28964 5.38739 5.43841 5.49207 5.55627 5.57828 5.69378 5.77764 5.84392 5.86413 5.91346 6.14324 6.22506 6.66177 7.02482 7.30655 7.58762 7.65239 7.84286 8.34646 8.58150 9.23218 10.85464 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009283 B = 0.003368 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.389151 B = 8311.560374 C =11065.550022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.205 3.795 3 N -0.461 5.461 4 C -0.075 4.075 5 C 0.607 3.393 6 O -0.537 6.537 7 N -0.695 5.695 8 C 0.118 3.882 9 H 0.106 0.894 10 C -0.154 4.154 11 C 0.125 3.875 12 H 0.096 0.904 13 N -0.726 5.726 14 C 0.534 3.466 15 O -0.511 6.511 16 C -0.154 4.154 17 S -0.058 6.058 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C -0.156 4.156 27 C 0.011 3.989 28 O -0.197 6.197 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.412 0.588 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.397 0.603 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.269 0.731 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.320 -20.174 0.104 23.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.004 4.004 3 N -0.192 5.192 4 C -0.194 4.194 5 C 0.393 3.607 6 O -0.415 6.415 7 N -0.346 5.346 8 C 0.013 3.987 9 H 0.124 0.876 10 C -0.193 4.193 11 C 0.019 3.981 12 H 0.114 0.886 13 N -0.382 5.382 14 C 0.320 3.680 15 O -0.385 6.385 16 C -0.305 4.305 17 S 0.168 5.832 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.195 4.195 27 C -0.063 4.063 28 O -0.083 6.083 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.250 0.750 33 H 0.125 0.875 34 H 0.095 0.905 35 H 0.232 0.768 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.124 0.876 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 13.354 -17.970 1.057 22.413 hybrid contribution -1.736 -2.439 -1.168 3.214 sum 11.618 -20.409 -0.111 23.484 Atomic orbital electron populations 1.20394 0.80511 1.05028 1.05996 1.26440 0.96761 0.78044 0.99186 1.70807 1.00476 1.29975 1.17933 1.21744 0.92210 0.93022 1.12474 1.16746 0.86218 0.81833 0.75931 1.90820 1.24289 1.75434 1.50912 1.45632 1.10504 1.05029 1.73482 1.21990 0.89033 0.90428 0.97294 0.87632 1.23736 1.00821 0.96836 0.97861 1.21804 0.81647 0.99451 0.95153 0.88629 1.45902 1.06706 1.20697 1.64862 1.20340 0.87180 0.82916 0.77531 1.90707 1.80874 1.26138 1.40745 1.23544 0.94447 1.07683 1.04798 1.85392 1.01281 1.16517 1.79980 1.22824 0.92977 1.05850 1.46734 0.90978 1.24980 0.99209 0.94537 0.94783 1.70002 1.31613 1.08264 1.40444 0.86239 0.81896 0.78351 0.79096 1.19928 1.20832 1.19961 1.23751 1.03420 0.94263 0.98085 1.25249 0.84955 0.95589 1.00475 1.84417 1.16652 1.38066 1.69172 0.89134 0.87863 0.87835 0.75013 0.87452 0.90455 0.76847 0.89271 0.89068 0.92133 0.90024 0.87585 0.75344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.51 36.01 0.38 0.02 16 2 C 0.20 1.92 8.30 -13.08 -0.11 1.81 16 3 N -0.46 -5.34 11.06 -7.66 -0.08 -5.42 16 4 C -0.07 -0.84 6.99 -83.02 -0.58 -1.42 16 5 C 0.61 7.36 7.81 -12.52 -0.10 7.26 16 6 O -0.54 -7.47 16.53 5.26 0.09 -7.38 16 7 N -0.69 -7.68 4.96 -54.09 -0.27 -7.95 16 8 C 0.12 1.17 4.28 -67.12 -0.29 0.88 16 9 H 0.11 1.05 7.54 -51.93 -0.39 0.66 16 10 C -0.15 -1.34 7.57 -25.92 -0.20 -1.54 16 11 C 0.13 1.41 4.00 -67.12 -0.27 1.15 16 12 H 0.10 1.17 8.05 -51.93 -0.42 0.75 16 13 N -0.73 -9.51 4.34 -53.02 -0.23 -9.74 16 14 C 0.53 9.68 7.85 -10.99 -0.09 9.59 16 15 O -0.51 -11.25 15.80 5.56 0.09 -11.16 16 16 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 17 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 18 C -0.54 -15.02 9.50 30.94 0.29 -14.73 16 19 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16 22 Si 0.92 21.04 29.55 -169.99 -5.02 16.01 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 26 C -0.16 -1.63 7.61 -25.92 -0.20 -1.82 16 27 C 0.01 0.10 11.95 29.96 0.36 0.46 16 28 O -0.20 -1.77 10.73 6.53 0.07 -1.70 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.41 4.74 6.92 -40.82 -0.28 4.46 16 33 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.70 8.13 -51.93 -0.42 0.28 16 35 H 0.40 4.45 7.82 -40.82 -0.32 4.13 16 36 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 37 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.23 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 373.87 15.07 5.63 5.63 Total: -1.00 -36.33 373.87 -7.05 -43.38 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.18 Total: 6.45 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -0.67 Total: 0.82 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.15 Total: -48.30 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: 0.24 Total: -20.24 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.33 -7.05 -43.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295167214.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.961 kcal (2) G-P(sol) polarization free energy of solvation -36.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds