Wall clock time and date at job start Tue Mar 31 2020 22:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29930 * 125.37725 * 2 1 4 4 C 1.36071 * 108.47420 * 180.12576 * 3 2 1 5 5 C 1.47416 * 126.44788 * 179.82159 * 4 3 2 6 6 O 1.21618 * 120.00106 * 179.97438 * 5 4 3 7 7 N 1.34785 * 120.00187 * 359.69261 * 5 4 3 8 8 C 1.46498 * 120.00221 * 179.97438 * 7 5 4 9 9 H 1.09003 * 112.84792 * 333.06236 * 8 7 5 10 10 C 1.53784 * 113.61092 * 104.36423 * 8 7 5 11 11 C 1.53778 * 87.08170 * 89.12015 * 10 8 7 12 12 H 1.08997 * 113.69189 * 139.99208 * 11 10 8 13 13 N 1.46503 * 113.61204 * 270.88731 * 11 10 8 14 14 C 1.34776 * 119.99907 * 182.67240 * 13 11 10 15 15 O 1.21280 * 119.99882 * 359.97438 * 14 13 11 16 16 C 1.50701 * 119.99838 * 179.97438 * 14 13 11 17 17 S 1.80999 * 109.47082 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00066 * 179.97438 * 17 16 14 19 19 H 1.07993 * 120.00067 * 0.02562 * 18 17 16 20 20 C 1.38801 * 119.99762 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00524 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99653 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47071 * 60.00490 * 22 20 18 24 24 H 1.48500 * 109.47082 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47124 * 300.00455 * 22 20 18 26 26 C 1.53772 * 113.61779 * 201.86181 * 8 7 5 27 27 C 1.36090 * 107.10163 * 359.56426 * 4 3 2 28 28 O 1.34045 * 125.37577 * 179.63641 * 2 1 3 29 29 H 1.08998 * 109.47115 * 180.34102 * 1 2 3 30 30 H 1.08997 * 109.47003 * 300.34430 * 1 2 3 31 31 H 1.09000 * 109.46949 * 60.33787 * 1 2 3 32 32 H 0.96996 * 119.99653 * 359.97438 * 7 5 4 33 33 H 1.09006 * 113.61058 * 203.66633 * 10 8 7 34 34 H 1.09000 * 113.61839 * 334.56861 * 10 8 7 35 35 H 0.96995 * 119.99836 * 2.66342 * 13 11 10 36 36 H 1.09001 * 109.47444 * 299.99362 * 16 14 13 37 37 H 1.09003 * 109.47061 * 59.99740 * 16 14 13 38 38 H 0.96992 * 120.00285 * 179.97438 * 21 20 18 39 39 H 1.09003 * 113.61383 * 25.43565 * 26 8 7 40 40 H 1.09002 * 113.62035 * 156.33658 * 26 8 7 41 41 H 1.07998 * 126.52379 * 180.25836 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 -0.0028 5 6 4.7439 1.5437 -0.0075 6 8 5.8605 1.0617 -0.0092 7 7 4.5879 2.8825 -0.0157 8 6 5.7632 3.7569 -0.0197 9 1 6.6369 3.2939 0.4389 10 6 6.0500 4.3969 -1.3884 11 6 5.1283 5.5490 -0.9548 12 1 5.4890 6.5338 -1.2516 13 7 3.7196 5.3330 -1.2941 14 6 2.8069 6.2864 -1.0214 15 8 3.1518 7.3230 -0.4947 16 6 1.3579 6.0644 -1.3710 17 16 0.3906 7.5143 -0.8830 18 6 -1.2146 6.9972 -1.3936 19 1 -1.3493 6.0294 -1.8535 20 6 -2.3061 7.8333 -1.2037 21 7 -2.1421 9.0127 -0.6427 22 14 -4.0079 7.2848 -1.7443 23 1 -4.3793 6.0407 -1.0233 24 1 -4.9938 8.3508 -1.4330 25 1 -4.0036 7.0268 -3.2067 26 6 5.4765 5.1769 0.4962 27 6 3.5659 -0.6971 0.0053 28 8 2.2831 -1.0929 0.0069 29 1 -0.3633 -1.0276 0.0061 30 1 -0.3633 0.5192 0.8869 31 1 -0.3633 0.5086 -0.8930 32 1 3.6974 3.2669 -0.0188 33 1 7.0898 4.6960 -1.5212 34 1 5.6634 3.8212 -2.2293 35 1 3.4439 4.5038 -1.7151 36 1 1.2631 5.9090 -2.4457 37 1 0.9872 5.1861 -0.8426 38 1 -2.9048 9.5971 -0.5103 39 1 4.6267 5.2308 1.1767 40 1 6.3593 5.6892 0.8785 41 1 4.4361 -1.3368 0.0096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001295167214.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:16 Heat of formation + Delta-G solvation = -55.452299 kcal Electronic energy + Delta-G solvation = -26442.396557 eV Core-core repulsion = 22450.001956 eV Total energy + Delta-G solvation = -3992.394601 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.48741 -41.75078 -40.36684 -38.98862 -36.03212 -34.87556 -34.56021 -33.81047 -33.07376 -30.64262 -28.85836 -27.66250 -26.83320 -26.36585 -24.48704 -22.72280 -22.09439 -21.38919 -20.74891 -19.78254 -19.27577 -17.98913 -17.93059 -17.51901 -17.25246 -17.01737 -16.85480 -16.64271 -16.09219 -15.91296 -15.68926 -15.39306 -14.86671 -14.82866 -14.64047 -14.42350 -13.94341 -13.80133 -13.58770 -13.31138 -13.25061 -13.14585 -12.99387 -12.84567 -12.59628 -12.38326 -12.07976 -11.91744 -11.74635 -11.49651 -11.38532 -11.10617 -10.93579 -10.34906 -10.26195 -10.09674 -9.96202 -8.64318 -8.32321 -6.10223 0.01907 0.88942 1.27501 1.45666 1.47791 1.55131 1.57703 1.58983 1.92937 2.12137 2.25655 2.30297 2.84555 3.01936 3.32739 3.35653 3.52640 3.63542 3.76498 3.79844 3.98845 4.09083 4.30389 4.39528 4.51141 4.51690 4.62504 4.64761 4.70586 4.73001 4.74866 4.82660 4.85272 4.96642 4.98434 5.20701 5.29448 5.43860 5.60498 6.19820 6.21855 6.41909 6.51174 6.95054 7.08953 7.20549 8.76627 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009283 B = 0.003368 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.389151 B = 8311.560374 C =11065.550022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.203 3.797 3 N -0.492 5.492 4 C -0.106 4.106 5 C 0.607 3.393 6 O -0.560 6.560 7 N -0.694 5.694 8 C 0.117 3.883 9 H 0.110 0.890 10 C -0.132 4.132 11 C 0.112 3.888 12 H 0.089 0.911 13 N -0.702 5.702 14 C 0.538 3.462 15 O -0.556 6.556 16 C -0.130 4.130 17 S -0.146 6.146 18 C -0.547 4.547 19 H 0.083 0.917 20 C 0.015 3.985 21 N -0.912 5.912 22 Si 0.997 3.003 23 H -0.259 1.259 24 H -0.280 1.280 25 H -0.263 1.263 26 C -0.151 4.151 27 C 0.028 3.972 28 O -0.195 6.195 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.409 0.591 33 H 0.136 0.864 34 H 0.079 0.921 35 H 0.409 0.591 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.271 0.729 39 H 0.056 0.944 40 H 0.128 0.872 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.293 -22.769 -0.901 25.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.006 4.006 3 N -0.223 5.223 4 C -0.225 4.225 5 C 0.394 3.606 6 O -0.439 6.439 7 N -0.345 5.345 8 C 0.012 3.988 9 H 0.128 0.872 10 C -0.170 4.170 11 C 0.007 3.993 12 H 0.107 0.893 13 N -0.357 5.357 14 C 0.324 3.676 15 O -0.433 6.433 16 C -0.282 4.282 17 S 0.081 5.919 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.190 4.190 21 N -0.549 5.549 22 Si 0.818 3.182 23 H -0.184 1.184 24 H -0.206 1.206 25 H -0.187 1.187 26 C -0.190 4.190 27 C -0.046 4.046 28 O -0.081 6.081 29 H 0.133 0.867 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.246 0.754 33 H 0.154 0.846 34 H 0.098 0.902 35 H 0.246 0.754 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.146 0.854 41 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 13.356 -20.604 0.035 24.554 hybrid contribution -1.627 -1.711 -0.839 2.506 sum 11.729 -22.315 -0.804 25.223 Atomic orbital electron populations 1.20593 0.78302 1.06771 1.06233 1.27110 0.97856 0.77676 0.97941 1.70770 1.00929 1.31223 1.19348 1.21778 0.92014 0.93915 1.14798 1.16879 0.86260 0.82062 0.75426 1.90797 1.25070 1.75775 1.52261 1.45675 1.10646 1.05026 1.73115 1.22073 0.88754 0.89849 0.98145 0.87222 1.23709 1.01551 0.94734 0.97033 1.22058 0.80521 1.00382 0.96377 0.89307 1.45640 1.07008 1.19774 1.63240 1.20032 0.87108 0.83115 0.77318 1.90695 1.81337 1.28144 1.43121 1.23374 0.94570 1.04395 1.05833 1.85553 1.03387 1.21899 1.81037 1.23173 0.93226 1.06342 1.46698 0.89897 1.26109 1.03993 0.94391 0.94513 1.70173 1.33002 1.09777 1.41907 0.85028 0.75762 0.78250 0.79125 1.18370 1.20555 1.18731 1.23776 1.03388 0.94987 0.96876 1.25802 0.85569 0.95200 0.98013 1.84451 1.16706 1.37939 1.69011 0.86693 0.87606 0.87410 0.75397 0.84636 0.90195 0.75425 0.87522 0.87357 0.92031 0.92468 0.85397 0.72576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.51 71.24 0.75 0.14 16 2 C 0.20 3.53 8.30 88.39 0.73 4.27 16 3 N -0.49 -10.98 11.06 -293.05 -3.24 -14.22 16 4 C -0.11 -2.29 6.99 40.41 0.28 -2.01 16 5 C 0.61 14.18 7.81 86.66 0.68 14.86 16 6 O -0.56 -14.92 16.53 -4.09 -0.07 -14.99 16 7 N -0.69 -14.71 4.96 -443.30 -2.20 -16.91 16 8 C 0.12 2.12 4.28 45.52 0.19 2.32 16 9 H 0.11 1.98 7.54 -2.39 -0.02 1.96 16 10 C -0.13 -1.97 7.57 31.12 0.24 -1.74 16 11 C 0.11 2.38 4.00 45.52 0.18 2.56 16 12 H 0.09 2.09 8.05 -2.39 -0.02 2.07 16 13 N -0.70 -17.72 4.34 -440.03 -1.91 -19.62 16 14 C 0.54 19.51 7.85 87.66 0.69 20.20 16 15 O -0.56 -25.07 15.80 -3.03 -0.05 -25.12 16 16 C -0.13 -5.13 6.16 71.24 0.44 -4.69 16 17 S -0.15 -8.01 20.57 -56.49 -1.16 -9.17 16 18 C -0.55 -30.81 9.50 67.95 0.65 -30.17 16 19 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 20 C 0.01 0.83 5.49 84.86 0.47 1.29 16 21 N -0.91 -55.63 13.22 21.65 0.29 -55.34 16 22 Si 1.00 42.77 29.55 68.60 2.03 44.79 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 24 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 26 C -0.15 -3.00 7.61 31.12 0.24 -2.77 16 27 C 0.03 0.46 11.95 67.32 0.80 1.26 16 28 O -0.20 -3.14 10.73 0.44 0.00 -3.14 16 29 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.11 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.41 9.17 6.92 -92.71 -0.64 8.53 16 33 H 0.14 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.08 1.22 8.13 -2.39 -0.02 1.20 16 35 H 0.41 8.52 7.82 -92.71 -0.73 7.80 16 36 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 37 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 38 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.26 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -81.17 373.87 -0.25 -81.41 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: -0.27 Total: 26.79 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 6.33 Total: 5.52 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -7.06 Total: -106.09 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -0.11 Total: -43.25 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.16 Total: -9.17 kcal Total: -81.17 -0.25 -81.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295167214.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.961 kcal (2) G-P(sol) polarization free energy of solvation -81.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds