Wall clock time and date at job start Tue Mar 31 2020 22:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30010 * 127.33703 * 2 1 4 4 O 1.20657 * 112.30328 * 180.02562 * 3 2 1 5 5 C 1.33491 * 113.15656 * 359.97438 * 4 3 2 6 6 C 1.37365 * 106.34389 * 0.02562 * 5 4 3 7 7 C 1.47393 * 128.56843 * 179.73701 * 6 5 4 8 8 O 1.21613 * 119.99994 * 180.02562 * 7 6 5 9 9 N 1.34772 * 120.00030 * 0.02562 * 7 6 5 10 10 C 1.46503 * 120.00255 * 180.02562 * 9 7 6 11 11 H 1.08998 * 112.84899 * 23.80002 * 10 9 7 12 12 C 1.53781 * 113.61501 * 155.00343 * 10 9 7 13 13 C 1.53778 * 87.07976 * 139.98099 * 12 10 9 14 14 H 1.08999 * 113.62031 * 89.19862 * 13 12 10 15 15 N 1.46504 * 113.61385 * 220.01507 * 13 12 10 16 16 C 1.34778 * 120.00280 * 204.99662 * 15 13 12 17 17 O 1.21274 * 119.99595 * 0.02562 * 16 15 13 18 18 C 1.50698 * 119.99639 * 179.97438 * 16 15 13 19 19 S 1.81003 * 109.46581 * 180.02562 * 18 16 15 20 20 C 1.76203 * 100.00192 * 180.02562 * 19 18 16 21 21 H 1.08009 * 119.99667 * 0.02562 * 20 19 18 22 22 C 1.38791 * 120.00581 * 179.97438 * 20 19 18 23 23 N 1.31637 * 119.99586 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00342 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47209 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47309 * 120.00221 * 24 22 20 27 27 H 1.48498 * 109.46879 * 239.99951 * 24 22 20 28 28 C 1.53780 * 113.61272 * 252.50059 * 10 9 7 29 29 H 1.08999 * 109.46835 * 269.97871 * 1 2 3 30 30 H 1.09002 * 109.47070 * 29.97411 * 1 2 3 31 31 H 1.09001 * 109.47058 * 149.97701 * 1 2 3 32 32 H 1.08004 * 126.83070 * 180.02562 * 5 4 3 33 33 H 0.97006 * 120.00241 * 0.02562 * 9 7 6 34 34 H 1.08997 * 113.61113 * 254.52501 * 12 10 9 35 35 H 1.09000 * 113.61452 * 25.42921 * 12 10 9 36 36 H 0.97000 * 119.99932 * 25.00381 * 15 13 12 37 37 H 1.08997 * 109.47711 * 300.00338 * 18 16 15 38 38 H 1.08996 * 109.47041 * 60.01081 * 18 16 15 39 39 H 0.97003 * 119.99572 * 179.97438 * 23 22 20 40 40 H 1.09005 * 113.61710 * 334.56121 * 28 10 9 41 41 H 1.08995 * 113.62022 * 105.46860 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 -0.0005 5 6 3.6494 -0.6008 -0.0004 6 6 2.3991 -1.1697 -0.0003 7 6 2.0400 -2.5992 -0.0054 8 8 0.8704 -2.9324 -0.0050 9 7 3.0078 -3.5371 -0.0106 10 6 2.6509 -4.9580 -0.0163 11 1 1.6560 -5.1429 -0.4212 12 6 3.7387 -5.8640 -0.6169 13 6 3.4127 -6.8654 0.5037 14 1 2.6268 -7.5737 0.2415 15 7 4.5961 -7.5142 1.0736 16 6 4.4848 -8.7209 1.6635 17 8 3.4049 -9.2698 1.7221 18 6 5.7023 -9.3885 2.2491 19 16 5.2310 -10.9839 2.9624 20 6 6.7979 -11.5280 3.5572 21 1 7.6720 -10.9083 3.4212 22 6 6.9087 -12.7523 4.2014 23 7 5.8431 -13.5069 4.3685 24 14 8.5697 -13.3288 4.8326 25 1 9.5994 -12.3045 4.5232 26 1 8.4982 -13.5299 6.3022 27 1 8.9317 -14.6099 4.1747 28 6 2.9134 -5.6644 1.3242 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 4.5967 -1.1196 -0.0004 33 1 3.9408 -3.2715 -0.0106 34 1 3.4988 -6.2318 -1.6144 35 1 4.7426 -5.4447 -0.5493 36 1 5.4598 -7.0753 1.0265 37 1 6.4429 -9.5460 1.4651 38 1 6.1261 -8.7534 3.0270 39 1 5.9206 -14.3628 4.8184 40 1 3.6917 -5.1906 1.9225 41 1 2.0073 -5.8711 1.8937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295168567.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:07 Heat of formation + Delta-G solvation = 6.187747 kcal Electronic energy + Delta-G solvation = -25159.204029 eV Core-core repulsion = 21169.482340 eV Total energy + Delta-G solvation = -3989.721688 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.43444 -40.66737 -39.41952 -38.00007 -34.95536 -34.53833 -33.10361 -32.45726 -32.08252 -29.31133 -29.06629 -26.10386 -25.91213 -25.49637 -23.70251 -21.87062 -21.14802 -20.47878 -20.42406 -18.66065 -18.24206 -17.83778 -17.17673 -17.02274 -16.41349 -15.80716 -15.42627 -15.25546 -14.87882 -14.82860 -14.74133 -14.19031 -13.84885 -13.72193 -13.57545 -13.23353 -13.01304 -12.92601 -12.89772 -12.64334 -12.07063 -11.84005 -11.63689 -11.55007 -11.18291 -11.09398 -11.05047 -10.78054 -10.52077 -10.41610 -10.31507 -9.83665 -9.55668 -9.43604 -9.10714 -8.93551 -8.26704 -6.53372 -6.24737 -3.95545 0.49425 1.29387 2.30401 2.66662 2.68849 2.99597 3.02697 3.19244 3.26277 3.30593 3.51544 3.68251 3.75535 4.04452 4.17232 4.21898 4.28419 4.39713 4.57675 4.60279 4.78350 5.06590 5.08954 5.10659 5.13018 5.24712 5.26901 5.30580 5.36241 5.50700 5.57798 5.70216 5.76121 5.82776 5.84835 6.08119 6.10497 6.56270 6.91753 7.56709 7.62737 7.63907 7.69336 8.32253 8.54318 9.20770 10.82729 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.028798 B = 0.001617 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.060202 B =17312.141109 C =17835.383760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.072 3.928 3 N -0.359 5.359 4 O 0.099 5.901 5 C -0.004 4.004 6 C -0.256 4.256 7 C 0.597 3.403 8 O -0.523 6.523 9 N -0.711 5.711 10 C 0.126 3.874 11 H 0.123 0.877 12 C -0.153 4.153 13 C 0.131 3.869 14 H 0.120 0.880 15 N -0.727 5.727 16 C 0.533 3.467 17 O -0.515 6.515 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C -0.165 4.165 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.226 0.774 33 H 0.399 0.601 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.398 0.602 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.089 0.911 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.689 27.499 -11.893 30.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 N -0.067 5.067 4 O 0.040 5.960 5 C -0.087 4.087 6 C -0.263 4.263 7 C 0.383 3.617 8 O -0.399 6.399 9 N -0.361 5.361 10 C 0.021 3.979 11 H 0.141 0.859 12 C -0.192 4.192 13 C 0.024 3.976 14 H 0.138 0.862 15 N -0.381 5.381 16 C 0.319 3.681 17 O -0.388 6.388 18 C -0.305 4.305 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.205 1.205 28 C -0.205 4.205 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.242 0.758 33 H 0.234 0.766 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.232 0.768 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.606 27.467 -11.725 30.386 hybrid contribution 3.361 -0.248 0.404 3.395 sum -2.245 27.218 -11.321 29.564 Atomic orbital electron populations 1.20305 0.84705 1.04525 1.04139 1.24922 0.99097 0.86187 0.98895 1.73715 0.89186 1.23528 1.20240 1.84594 1.21649 1.22928 1.66870 1.26434 1.00214 0.84285 0.97780 1.22371 0.92938 0.95641 1.15349 1.16856 0.85621 0.83057 0.76173 1.90821 1.18153 1.81833 1.49143 1.45754 1.08975 1.06115 1.75299 1.22401 1.00256 0.77634 0.97593 0.85907 1.23769 0.99260 0.96264 0.99869 1.22127 0.89877 0.92616 0.92954 0.86178 1.45924 1.10756 1.20570 1.60817 1.20365 0.90629 0.80133 0.76950 1.90706 1.28713 1.63418 1.56007 1.23538 0.98459 1.04983 1.03508 1.85428 1.14310 1.11025 1.72604 1.22905 0.94561 1.07255 1.43686 0.90875 1.24998 0.97782 0.95530 0.95295 1.70031 1.28457 1.11568 1.40167 0.86111 0.82161 0.78635 0.78549 1.19637 1.20561 1.20546 1.24008 1.02756 0.96500 0.97247 0.89579 0.90312 0.88497 0.75782 0.76644 0.89663 0.89057 0.76768 0.89189 0.89230 0.92206 0.89292 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.15 36.01 0.37 -0.20 16 2 C 0.07 0.62 7.58 -79.76 -0.60 0.01 16 3 N -0.36 -3.24 12.01 34.78 0.42 -2.82 16 4 O 0.10 0.68 11.06 18.66 0.21 0.88 16 5 C 0.00 -0.02 11.85 30.41 0.36 0.34 16 6 C -0.26 -1.85 6.47 -102.89 -0.67 -2.52 16 7 C 0.60 5.07 7.81 -12.54 -0.10 4.98 16 8 O -0.52 -6.34 15.29 5.27 0.08 -6.26 16 9 N -0.71 -4.04 5.35 -54.10 -0.29 -4.33 16 10 C 0.13 0.89 4.24 -67.12 -0.28 0.60 16 11 H 0.12 1.05 7.46 -51.93 -0.39 0.66 16 12 C -0.15 -0.91 7.58 -25.92 -0.20 -1.10 16 13 C 0.13 1.28 4.24 -67.12 -0.28 0.99 16 14 H 0.12 1.43 7.46 -51.93 -0.39 1.04 16 15 N -0.73 -8.36 5.35 -53.02 -0.28 -8.65 16 16 C 0.53 9.29 7.85 -10.99 -0.09 9.20 16 17 O -0.51 -11.19 15.46 5.56 0.09 -11.11 16 18 C -0.15 -2.96 6.16 36.00 0.22 -2.73 16 19 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 20 C -0.54 -15.00 9.50 30.94 0.29 -14.71 16 21 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 22 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.87 13.22 55.49 0.73 -25.13 16 24 Si 0.92 21.08 29.55 -169.99 -5.02 16.06 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 C -0.16 -1.44 7.68 -25.92 -0.20 -1.63 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 0.76 7.11 -51.93 -0.37 0.39 16 32 H 0.23 -0.24 7.68 -52.48 -0.40 -0.65 16 33 H 0.40 0.93 7.91 -40.82 -0.32 0.61 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.36 8.09 -51.93 -0.42 -0.06 16 36 H 0.40 3.29 8.73 -40.82 -0.36 2.93 16 37 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 38 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 373.35 15.07 5.63 5.63 Total: -1.00 -37.95 373.35 -7.08 -45.04 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -5.15 Total: -0.69 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -1.27 Total: -4.81 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.58 Total: -40.92 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: 0.37 Total: -16.49 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.95 -7.08 -45.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295168567.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.224 kcal (2) G-P(sol) polarization free energy of solvation -37.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds