Wall clock time and date at job start Tue Mar 31 2020 22:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30010 * 127.33703 * 2 1 4 4 O 1.20657 * 112.30328 * 180.02562 * 3 2 1 5 5 C 1.33491 * 113.15656 * 359.97438 * 4 3 2 6 6 C 1.37365 * 106.34389 * 0.02562 * 5 4 3 7 7 C 1.47393 * 128.56843 * 179.73701 * 6 5 4 8 8 O 1.21613 * 119.99994 * 180.02562 * 7 6 5 9 9 N 1.34772 * 120.00030 * 0.02562 * 7 6 5 10 10 C 1.46503 * 120.00255 * 180.02562 * 9 7 6 11 11 H 1.08998 * 112.84899 * 23.80002 * 10 9 7 12 12 C 1.53781 * 113.61501 * 155.00343 * 10 9 7 13 13 C 1.53778 * 87.07976 * 139.98099 * 12 10 9 14 14 H 1.08999 * 113.62031 * 89.19862 * 13 12 10 15 15 N 1.46504 * 113.61385 * 220.01507 * 13 12 10 16 16 C 1.34778 * 120.00280 * 204.99662 * 15 13 12 17 17 O 1.21274 * 119.99595 * 0.02562 * 16 15 13 18 18 C 1.50698 * 119.99639 * 179.97438 * 16 15 13 19 19 S 1.81003 * 109.46581 * 180.02562 * 18 16 15 20 20 C 1.76203 * 100.00192 * 180.02562 * 19 18 16 21 21 H 1.08009 * 119.99667 * 0.02562 * 20 19 18 22 22 C 1.38791 * 120.00581 * 179.97438 * 20 19 18 23 23 N 1.31637 * 119.99586 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00342 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47209 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47309 * 120.00221 * 24 22 20 27 27 H 1.48498 * 109.46879 * 239.99951 * 24 22 20 28 28 C 1.53780 * 113.61272 * 252.50059 * 10 9 7 29 29 H 1.08999 * 109.46835 * 269.97871 * 1 2 3 30 30 H 1.09002 * 109.47070 * 29.97411 * 1 2 3 31 31 H 1.09001 * 109.47058 * 149.97701 * 1 2 3 32 32 H 1.08004 * 126.83070 * 180.02562 * 5 4 3 33 33 H 0.97006 * 120.00241 * 0.02562 * 9 7 6 34 34 H 1.08997 * 113.61113 * 254.52501 * 12 10 9 35 35 H 1.09000 * 113.61452 * 25.42921 * 12 10 9 36 36 H 0.97000 * 119.99932 * 25.00381 * 15 13 12 37 37 H 1.08997 * 109.47711 * 300.00338 * 18 16 15 38 38 H 1.08996 * 109.47041 * 60.01081 * 18 16 15 39 39 H 0.97003 * 119.99572 * 179.97438 * 23 22 20 40 40 H 1.09005 * 113.61710 * 334.56121 * 28 10 9 41 41 H 1.08995 * 113.62022 * 105.46860 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 -0.0005 5 6 3.6494 -0.6008 -0.0004 6 6 2.3991 -1.1697 -0.0003 7 6 2.0400 -2.5992 -0.0054 8 8 0.8704 -2.9324 -0.0050 9 7 3.0078 -3.5371 -0.0106 10 6 2.6509 -4.9580 -0.0163 11 1 1.6560 -5.1429 -0.4212 12 6 3.7387 -5.8640 -0.6169 13 6 3.4127 -6.8654 0.5037 14 1 2.6268 -7.5737 0.2415 15 7 4.5961 -7.5142 1.0736 16 6 4.4848 -8.7209 1.6635 17 8 3.4049 -9.2698 1.7221 18 6 5.7023 -9.3885 2.2491 19 16 5.2310 -10.9839 2.9624 20 6 6.7979 -11.5280 3.5572 21 1 7.6720 -10.9083 3.4212 22 6 6.9087 -12.7523 4.2014 23 7 5.8431 -13.5069 4.3685 24 14 8.5697 -13.3288 4.8326 25 1 9.5994 -12.3045 4.5232 26 1 8.4982 -13.5299 6.3022 27 1 8.9317 -14.6099 4.1747 28 6 2.9134 -5.6644 1.3242 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 4.5967 -1.1196 -0.0004 33 1 3.9408 -3.2715 -0.0106 34 1 3.4988 -6.2318 -1.6144 35 1 4.7426 -5.4447 -0.5493 36 1 5.4598 -7.0753 1.0265 37 1 6.4429 -9.5460 1.4651 38 1 6.1261 -8.7534 3.0270 39 1 5.9206 -14.3628 4.8184 40 1 3.6917 -5.1906 1.9225 41 1 2.0073 -5.8711 1.8937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001295168567.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:06 Heat of formation + Delta-G solvation = -23.408720 kcal Electronic energy + Delta-G solvation = -25160.487428 eV Core-core repulsion = 21169.482340 eV Total energy + Delta-G solvation = -3991.005087 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.97440 -41.43486 -40.43344 -38.98622 -35.50926 -35.37290 -34.57228 -34.01440 -32.72002 -30.62623 -29.73688 -27.67748 -26.72991 -26.50857 -24.45478 -22.39200 -21.95280 -21.46259 -21.20660 -19.80402 -19.14684 -18.78986 -18.04519 -17.71383 -17.55035 -16.87059 -16.65298 -16.42516 -16.12924 -15.97736 -15.73874 -15.31935 -14.75700 -14.61892 -14.37701 -14.25932 -14.12065 -13.96394 -13.45562 -13.44055 -13.35731 -13.14408 -12.90736 -12.65989 -12.40941 -12.32648 -12.27532 -11.95823 -11.68289 -11.21038 -11.14846 -10.98128 -10.88995 -10.81071 -10.24380 -10.17691 -9.94604 -8.65109 -8.33660 -6.11468 0.07467 0.71884 1.28914 1.42492 1.48988 1.59172 1.63156 1.82934 2.09724 2.23189 2.28637 2.44536 3.00378 3.00841 3.30439 3.33846 3.40951 3.56826 3.79521 3.88385 3.92554 3.98800 4.04249 4.35023 4.41849 4.54227 4.57409 4.58337 4.66291 4.70059 4.72566 4.76074 4.92106 5.01963 5.07481 5.14773 5.42079 5.43545 5.61431 6.21243 6.45255 6.57676 7.08029 7.12175 7.21259 7.30774 8.75745 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.028798 B = 0.001617 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.060202 B =17312.141109 C =17835.383760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.050 3.950 3 N -0.384 5.384 4 O 0.096 5.904 5 C 0.036 3.964 6 C -0.284 4.284 7 C 0.597 3.403 8 O -0.570 6.570 9 N -0.691 5.691 10 C 0.132 3.868 11 H 0.103 0.897 12 C -0.124 4.124 13 C 0.115 3.885 14 H 0.091 0.909 15 N -0.697 5.697 16 C 0.533 3.467 17 O -0.568 6.568 18 C -0.129 4.129 19 S -0.158 6.158 20 C -0.544 4.544 21 H 0.085 0.915 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.255 1.255 26 H -0.276 1.276 27 H -0.275 1.275 28 C -0.162 4.162 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.283 0.717 33 H 0.420 0.580 34 H 0.094 0.906 35 H 0.129 0.871 36 H 0.420 0.580 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.270 0.730 40 H 0.107 0.893 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.209 29.530 -12.688 32.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 N -0.093 5.093 4 O 0.038 5.962 5 C -0.046 4.046 6 C -0.292 4.292 7 C 0.384 3.616 8 O -0.450 6.450 9 N -0.342 5.342 10 C 0.026 3.974 11 H 0.121 0.879 12 C -0.162 4.162 13 C 0.009 3.991 14 H 0.110 0.890 15 N -0.350 5.350 16 C 0.319 3.681 17 O -0.447 6.447 18 C -0.280 4.280 19 S 0.069 5.931 20 C -0.692 4.692 21 H 0.103 0.897 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.821 3.179 25 H -0.178 1.178 26 H -0.201 1.201 27 H -0.200 1.200 28 C -0.202 4.202 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.298 0.702 33 H 0.259 0.741 34 H 0.112 0.888 35 H 0.147 0.853 36 H 0.258 0.742 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.079 0.921 40 H 0.125 0.875 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.637 29.574 -12.551 32.169 hybrid contribution 2.140 -0.756 0.603 2.348 sum 0.503 28.818 -11.948 31.200 Atomic orbital electron populations 1.20272 0.84746 1.04348 1.04176 1.25216 0.99720 0.87048 0.99262 1.73721 0.89957 1.24149 1.21443 1.84558 1.20758 1.24323 1.66536 1.27380 1.00995 0.82869 0.93322 1.22272 0.94099 0.94669 1.18152 1.17052 0.85292 0.83834 0.75391 1.90806 1.20200 1.82551 1.51475 1.45503 1.09692 1.04933 1.74097 1.22134 1.00157 0.78555 0.96510 0.87869 1.23668 1.00541 0.93515 0.98493 1.22271 0.88798 0.92675 0.95371 0.89049 1.45611 1.12502 1.18363 1.58535 1.20124 0.89136 0.81571 0.77227 1.90700 1.30275 1.65241 1.58443 1.23380 0.99687 1.00644 1.04322 1.85648 1.16266 1.17141 1.74008 1.23247 0.94668 1.07727 1.43531 0.89720 1.26138 1.02128 0.95629 0.95378 1.70201 1.31239 1.12138 1.41320 0.84900 0.76917 0.78347 0.77747 1.17816 1.20123 1.20038 1.24003 1.02091 0.96258 0.97878 0.89462 0.89447 0.89635 0.70204 0.74113 0.88783 0.85336 0.74199 0.86935 0.87083 0.92067 0.87510 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.15 71.24 0.72 -0.46 16 2 C 0.05 0.84 7.58 45.16 0.34 1.18 16 3 N -0.38 -6.54 12.01 -44.78 -0.54 -7.08 16 4 O 0.10 1.07 11.06 77.01 0.85 1.93 16 5 C 0.04 0.16 11.85 67.61 0.80 0.96 16 6 C -0.28 -3.58 6.47 -18.74 -0.12 -3.71 16 7 C 0.60 9.31 7.81 86.65 0.68 9.99 16 8 O -0.57 -14.15 15.29 -4.07 -0.06 -14.21 16 9 N -0.69 -5.63 5.35 -443.33 -2.37 -8.01 16 10 C 0.13 1.59 4.24 45.52 0.19 1.79 16 11 H 0.10 1.75 7.46 -2.39 -0.02 1.73 16 12 C -0.12 -1.00 7.58 31.12 0.24 -0.76 16 13 C 0.11 2.05 4.24 45.52 0.19 2.24 16 14 H 0.09 2.24 7.46 -2.39 -0.02 2.22 16 15 N -0.70 -14.17 5.35 -440.04 -2.36 -16.53 16 16 C 0.53 18.14 7.85 87.66 0.69 18.83 16 17 O -0.57 -25.46 15.46 -3.01 -0.05 -25.51 16 18 C -0.13 -4.77 6.16 71.24 0.44 -4.33 16 19 S -0.16 -8.58 20.57 -56.49 -1.16 -9.74 16 20 C -0.54 -30.38 9.50 67.95 0.65 -29.74 16 21 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 22 C 0.01 0.66 5.49 84.85 0.47 1.13 16 23 N -0.91 -55.62 13.22 21.65 0.29 -55.33 16 24 Si 1.00 42.79 29.55 68.60 2.03 44.81 16 25 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 26 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 28 C -0.16 -2.58 7.68 31.12 0.24 -2.34 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.47 7.11 -2.39 -0.02 1.46 16 32 H 0.28 -2.51 7.68 -2.91 -0.02 -2.53 16 33 H 0.42 -0.31 7.91 -92.70 -0.73 -1.05 16 34 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.13 0.16 8.09 -2.39 -0.02 0.14 16 36 H 0.42 4.97 8.73 -92.71 -0.81 4.16 16 37 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 38 H 0.11 3.63 8.14 -2.40 -0.02 3.61 16 39 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 40 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -89.88 373.35 1.70 -88.18 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -0.45 Total: 6.70 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 5.52 Total: -5.21 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -4.98 Total: -86.94 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: 0.74 Total: -37.79 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -89.88 1.70 -88.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295168567.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.769 kcal (2) G-P(sol) polarization free energy of solvation -89.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds