Wall clock time and date at job start Tue Mar 31 2020 22:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47426 * 334.12379 * 3 2 1 5 5 C 1.34779 * 120.00165 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99926 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00033 * 179.97438 * 5 4 3 8 8 C 1.50706 * 109.46817 * 180.02562 * 7 5 4 9 9 O 1.21279 * 120.00072 * 359.97438 * 8 7 5 10 10 N 1.34777 * 119.99762 * 179.97438 * 8 7 5 11 11 C 1.47071 * 136.05521 * 359.63728 * 10 8 7 12 12 C 1.53759 * 87.88734 * 152.95984 * 11 10 8 13 13 N 1.46496 * 114.26693 * 139.78755 * 12 11 10 14 14 C 1.34779 * 119.99607 * 111.47570 * 13 12 11 15 15 O 1.21281 * 120.00277 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99715 * 180.02562 * 14 13 12 17 17 S 1.81002 * 109.46956 * 180.02562 * 16 14 13 18 18 C 1.76196 * 99.99981 * 179.97438 * 17 16 14 19 19 H 1.08006 * 120.00190 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00144 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99878 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99793 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46989 * 90.00643 * 22 20 18 24 24 H 1.48507 * 109.46760 * 209.99911 * 22 20 18 25 25 H 1.48496 * 109.47369 * 330.00297 * 22 20 18 26 26 C 1.47060 * 136.05949 * 180.02562 * 10 8 7 27 27 H 4.40642 * 5.51364 * 179.97438 * 4 1 2 28 28 H 1.08996 * 109.47169 * 214.12071 * 3 2 1 29 29 H 1.09004 * 109.47401 * 94.12491 * 3 2 1 30 30 H 0.96996 * 119.99985 * 0.02562 * 4 3 2 31 31 H 1.09000 * 109.46670 * 60.00406 * 7 5 4 32 32 H 1.09000 * 109.47247 * 300.00119 * 7 5 4 33 33 H 1.08999 * 113.46214 * 267.68554 * 11 10 8 34 34 H 1.08997 * 113.47159 * 38.12653 * 11 10 8 35 35 H 1.09005 * 114.38956 * 272.67092 * 12 11 10 36 36 H 0.96996 * 120.00176 * 291.47516 * 13 12 11 37 37 H 1.08998 * 109.47208 * 299.99412 * 16 14 13 38 38 H 1.09002 * 109.47557 * 59.99896 * 16 14 13 39 39 H 0.97001 * 119.99884 * 179.97438 * 21 20 18 40 40 H 1.09004 * 113.46886 * 321.86763 * 26 10 8 41 41 H 1.08994 * 113.47088 * 92.24425 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2418 0.6028 5 6 4.4601 -1.4630 0.7098 6 8 5.2479 -0.6332 0.3075 7 6 4.9631 -2.7409 1.3304 8 6 6.4702 -2.7402 1.3302 9 8 7.0760 -1.7953 0.8709 10 7 7.1446 -3.7896 1.8405 11 6 6.7908 -5.0706 2.4704 12 6 8.1290 -5.6274 1.9574 13 7 8.8249 -6.4956 2.9103 14 6 8.9452 -7.8139 2.6572 15 8 8.4769 -8.2815 1.6409 16 6 9.6606 -8.7072 3.6378 17 16 9.6558 -10.4081 3.0190 18 6 10.5309 -11.2099 4.3212 19 1 10.8839 -10.6381 5.1668 20 6 10.7666 -12.5765 4.2605 21 7 10.3369 -13.2732 3.2298 22 14 11.6950 -13.4263 5.6408 23 1 10.7328 -13.8896 6.6726 24 1 12.4351 -14.5924 5.0950 25 1 12.6552 -12.4726 6.2521 26 6 8.5579 -4.1546 2.0186 27 1 -1.0498 -0.0002 0.0003 28 1 3.0089 0.8515 0.5764 29 1 3.0093 0.0747 -1.0250 30 1 2.5050 -1.9056 0.9242 31 1 4.5997 -3.5920 0.7545 32 1 4.6002 -2.8143 2.3556 33 1 6.7309 -5.0178 3.5575 34 1 5.9197 -5.5487 2.0225 35 1 8.0881 -6.0397 0.9491 36 1 9.1991 -6.1217 3.7233 37 1 10.6893 -8.3668 3.7558 38 1 9.1525 -8.6693 4.6015 39 1 10.5020 -14.2282 3.1872 40 1 9.1927 -3.8523 1.1857 41 1 8.9638 -3.8596 2.9862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297002730.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:31 Heat of formation + Delta-G solvation = -1.436013 kcal Electronic energy + Delta-G solvation = -24722.300676 eV Core-core repulsion = 20732.248396 eV Total energy + Delta-G solvation = -3990.052279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.04383 -40.13866 -38.90849 -37.70991 -35.82665 -33.82923 -33.18573 -32.47141 -31.58095 -29.86524 -28.27847 -27.06989 -26.28799 -25.52525 -22.49999 -21.12967 -20.65650 -19.64069 -18.91160 -17.92111 -17.80334 -17.10794 -16.90900 -16.45712 -16.35039 -16.10842 -15.66895 -15.11985 -14.93606 -14.84175 -14.49388 -14.18023 -13.81884 -13.74558 -13.48657 -13.39402 -13.23448 -13.04090 -12.61675 -12.56658 -12.25160 -12.05281 -11.39570 -11.32567 -11.09958 -11.06703 -11.03854 -10.80535 -10.51375 -9.87487 -9.80644 -9.56888 -9.52914 -9.15713 -9.09761 -9.00627 -8.29959 -6.55577 -6.26062 -3.97178 1.75900 2.15360 2.22520 2.28793 2.38780 2.88320 2.94786 3.09717 3.19505 3.25712 3.29579 3.64113 3.69043 3.88170 4.11044 4.16191 4.27559 4.54848 4.66668 4.74821 4.82571 4.99267 5.00261 5.04953 5.06627 5.09549 5.14500 5.28698 5.32744 5.41397 5.51973 5.79848 5.81852 5.82217 6.06494 6.41547 6.91004 6.95562 7.33123 7.52534 7.55770 7.73855 7.92868 8.30783 8.44086 9.19578 10.81337 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029674 B = 0.001496 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.375164 B =18709.869421 C =19260.063478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.211 4.211 3 C 0.232 3.768 4 N -0.734 5.734 5 C 0.516 3.484 6 O -0.490 6.490 7 C -0.157 4.157 8 C 0.547 3.453 9 O -0.493 6.493 10 N -0.649 5.649 11 C 0.080 3.920 12 C 0.118 3.882 13 N -0.726 5.726 14 C 0.536 3.464 15 O -0.512 6.512 16 C -0.155 4.155 17 S -0.059 6.059 18 C -0.537 4.537 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.097 3.903 27 H 0.222 0.778 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.403 0.597 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.133 0.867 36 H 0.402 0.598 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.269 0.731 40 H 0.087 0.913 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.432 23.658 -0.546 28.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.212 4.212 3 C 0.110 3.890 4 N -0.390 5.390 5 C 0.300 3.700 6 O -0.362 6.362 7 C -0.200 4.200 8 C 0.334 3.666 9 O -0.365 6.365 10 N -0.387 5.387 11 C -0.045 4.045 12 C 0.010 3.990 13 N -0.380 5.380 14 C 0.323 3.677 15 O -0.385 6.385 16 C -0.305 4.305 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.026 4.026 27 H 0.239 0.761 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.238 0.762 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.151 0.849 36 H 0.237 0.763 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.377 24.053 -3.014 29.254 hybrid contribution 0.594 -0.244 2.790 2.863 sum -15.783 23.809 -0.224 28.566 Atomic orbital electron populations 1.25067 0.95985 0.97664 0.99941 1.22913 0.94246 1.02606 1.01392 1.18039 0.83048 0.87808 1.00117 1.45953 1.07086 1.21482 1.64435 1.19982 0.81871 0.88324 0.79854 1.90896 1.54269 1.45379 1.45609 1.21492 0.94658 0.98817 1.05042 1.19366 0.88469 0.80448 0.78317 1.90888 1.69283 1.32253 1.44063 1.49285 1.09497 1.19266 1.60670 1.23726 1.00131 0.81533 0.99084 1.22697 0.91435 0.88747 0.96101 1.45838 1.59646 1.08026 1.24526 1.20398 0.78814 0.81500 0.87015 1.90716 1.46699 1.74027 1.27102 1.23544 1.02544 1.03246 1.01189 1.85412 1.74612 0.92630 1.30634 1.22863 1.41918 0.95831 1.07897 0.90877 1.24987 0.95617 0.96319 0.96576 1.70010 1.43652 1.07912 1.28665 0.86170 0.79497 0.78899 0.80951 1.20266 1.20736 1.19678 1.23335 0.84364 0.92011 1.02915 0.76090 0.88961 0.88918 0.76242 0.85702 0.85896 0.89130 0.89564 0.84927 0.76293 0.88995 0.89013 0.92139 0.89490 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 19.25 29.55 0.57 -0.20 16 2 C -0.21 -1.24 13.46 -37.12 -0.50 -1.74 16 3 C 0.23 1.47 6.15 -6.83 -0.04 1.43 16 4 N -0.73 -4.40 5.54 -63.16 -0.35 -4.75 16 5 C 0.52 4.69 7.82 -10.99 -0.09 4.61 16 6 O -0.49 -7.04 14.18 -18.96 -0.27 -7.31 16 7 C -0.16 -1.03 6.01 -29.03 -0.17 -1.20 16 8 C 0.55 6.02 8.07 -10.98 -0.09 5.93 16 9 O -0.49 -7.94 14.95 -18.96 -0.28 -8.22 16 10 N -0.65 -5.89 3.69 -185.06 -0.68 -6.58 16 11 C 0.08 0.57 8.25 -8.37 -0.07 0.50 16 12 C 0.12 1.10 4.62 -67.66 -0.31 0.79 16 13 N -0.73 -7.66 5.39 -53.47 -0.29 -7.95 16 14 C 0.54 8.71 7.85 -10.98 -0.09 8.62 16 15 O -0.51 -10.45 15.45 5.56 0.09 -10.36 16 16 C -0.15 -2.82 6.16 36.01 0.22 -2.60 16 17 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 18 C -0.54 -14.74 9.50 30.94 0.29 -14.45 16 19 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 20 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -25.49 13.22 55.49 0.73 -24.76 16 22 Si 0.92 20.81 29.55 -169.99 -5.02 15.79 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 C 0.10 0.83 8.38 -8.50 -0.07 0.76 16 27 H 0.22 0.28 7.80 -54.10 -0.42 -0.14 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.40 1.32 8.45 -40.82 -0.34 0.98 16 31 H 0.13 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.13 1.52 7.45 -51.93 -0.39 1.13 16 36 H 0.40 3.02 8.76 -40.82 -0.36 2.66 16 37 H 0.09 1.55 8.14 -51.92 -0.42 1.12 16 38 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 39 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 384.86 15.07 5.80 5.80 Total: -1.00 -40.14 384.86 -8.21 -48.35 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.28 Total: -0.67 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -0.44 Total: 4.41 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: -0.59 Total: -44.04 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.47 Total: -25.90 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -40.14 -8.21 -48.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297002730.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.914 kcal (2) G-P(sol) polarization free energy of solvation -40.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds