Wall clock time and date at job start Tue Mar 31 2020 22:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47426 * 334.12379 * 3 2 1 5 5 C 1.34779 * 120.00165 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99926 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00033 * 179.97438 * 5 4 3 8 8 C 1.50706 * 109.46817 * 180.02562 * 7 5 4 9 9 O 1.21279 * 120.00072 * 359.97438 * 8 7 5 10 10 N 1.34777 * 119.99762 * 179.97438 * 8 7 5 11 11 C 1.47071 * 136.05521 * 359.63728 * 10 8 7 12 12 C 1.53759 * 87.88734 * 152.95984 * 11 10 8 13 13 N 1.46496 * 114.26693 * 139.78755 * 12 11 10 14 14 C 1.34779 * 119.99607 * 111.47570 * 13 12 11 15 15 O 1.21281 * 120.00277 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99715 * 180.02562 * 14 13 12 17 17 S 1.81002 * 109.46956 * 180.02562 * 16 14 13 18 18 C 1.76196 * 99.99981 * 179.97438 * 17 16 14 19 19 H 1.08006 * 120.00190 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00144 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99878 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99793 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46989 * 90.00643 * 22 20 18 24 24 H 1.48507 * 109.46760 * 209.99911 * 22 20 18 25 25 H 1.48496 * 109.47369 * 330.00297 * 22 20 18 26 26 C 1.47060 * 136.05949 * 180.02562 * 10 8 7 27 27 H 4.40642 * 5.51364 * 179.97438 * 4 1 2 28 28 H 1.08996 * 109.47169 * 214.12071 * 3 2 1 29 29 H 1.09004 * 109.47401 * 94.12491 * 3 2 1 30 30 H 0.96996 * 119.99985 * 0.02562 * 4 3 2 31 31 H 1.09000 * 109.46670 * 60.00406 * 7 5 4 32 32 H 1.09000 * 109.47247 * 300.00119 * 7 5 4 33 33 H 1.08999 * 113.46214 * 267.68554 * 11 10 8 34 34 H 1.08997 * 113.47159 * 38.12653 * 11 10 8 35 35 H 1.09005 * 114.38956 * 272.67092 * 12 11 10 36 36 H 0.96996 * 120.00176 * 291.47516 * 13 12 11 37 37 H 1.08998 * 109.47208 * 299.99412 * 16 14 13 38 38 H 1.09002 * 109.47557 * 59.99896 * 16 14 13 39 39 H 0.97001 * 119.99884 * 179.97438 * 21 20 18 40 40 H 1.09004 * 113.46886 * 321.86763 * 26 10 8 41 41 H 1.08994 * 113.47088 * 92.24425 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2418 0.6028 5 6 4.4601 -1.4630 0.7098 6 8 5.2479 -0.6332 0.3075 7 6 4.9631 -2.7409 1.3304 8 6 6.4702 -2.7402 1.3302 9 8 7.0760 -1.7953 0.8709 10 7 7.1446 -3.7896 1.8405 11 6 6.7908 -5.0706 2.4704 12 6 8.1290 -5.6274 1.9574 13 7 8.8249 -6.4956 2.9103 14 6 8.9452 -7.8139 2.6572 15 8 8.4769 -8.2815 1.6409 16 6 9.6606 -8.7072 3.6378 17 16 9.6558 -10.4081 3.0190 18 6 10.5309 -11.2099 4.3212 19 1 10.8839 -10.6381 5.1668 20 6 10.7666 -12.5765 4.2605 21 7 10.3369 -13.2732 3.2298 22 14 11.6950 -13.4263 5.6408 23 1 10.7328 -13.8896 6.6726 24 1 12.4351 -14.5924 5.0950 25 1 12.6552 -12.4726 6.2521 26 6 8.5579 -4.1546 2.0186 27 1 -1.0498 -0.0002 0.0003 28 1 3.0089 0.8515 0.5764 29 1 3.0093 0.0747 -1.0250 30 1 2.5050 -1.9056 0.9242 31 1 4.5997 -3.5920 0.7545 32 1 4.6002 -2.8143 2.3556 33 1 6.7309 -5.0178 3.5575 34 1 5.9197 -5.5487 2.0225 35 1 8.0881 -6.0397 0.9491 36 1 9.1991 -6.1217 3.7233 37 1 10.6893 -8.3668 3.7558 38 1 9.1525 -8.6693 4.6015 39 1 10.5020 -14.2282 3.1872 40 1 9.1927 -3.8523 1.1857 41 1 8.9638 -3.8596 2.9862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297002730.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:30 Heat of formation + Delta-G solvation = -32.920895 kcal Electronic energy + Delta-G solvation = -24723.665962 eV Core-core repulsion = 20732.248396 eV Total energy + Delta-G solvation = -3991.417566 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.83489 -40.95016 -40.00288 -38.63341 -36.43964 -34.92735 -34.54412 -33.70501 -32.28228 -31.03576 -29.20134 -27.71857 -27.54115 -26.92171 -23.39507 -21.83662 -21.75546 -20.31221 -19.75513 -19.42426 -18.52555 -18.00632 -17.72825 -17.39696 -17.09805 -16.90129 -16.84079 -16.48316 -16.17472 -16.06444 -15.65577 -14.98255 -14.79599 -14.61313 -14.49729 -14.31830 -14.15444 -14.10437 -13.70366 -13.46329 -13.23695 -13.12449 -12.92103 -12.86480 -12.58085 -12.16462 -11.82214 -11.70066 -11.47887 -11.28812 -11.10859 -10.95281 -10.58368 -10.21951 -10.15569 -10.10567 -9.79371 -8.61468 -8.31482 -6.08287 1.21683 1.32687 1.44834 1.48250 1.52228 1.57792 1.61370 1.62504 1.74685 1.82110 2.30052 2.38313 2.57430 3.03208 3.20247 3.34293 3.36419 3.40298 3.69956 3.86640 3.99290 4.12680 4.31099 4.33514 4.38782 4.42149 4.48388 4.53196 4.58319 4.59985 4.64541 4.78757 4.96789 4.99576 5.27754 5.45901 5.46824 6.23340 6.44433 6.50051 6.56171 6.64965 7.06206 7.10716 7.24888 7.26918 8.77476 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029674 B = 0.001496 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.375164 B =18709.869421 C =19260.063478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.248 4.248 3 C 0.232 3.768 4 N -0.716 5.716 5 C 0.512 3.488 6 O -0.552 6.552 7 C -0.146 4.146 8 C 0.539 3.461 9 O -0.555 6.555 10 N -0.648 5.648 11 C 0.093 3.907 12 C 0.110 3.890 13 N -0.696 5.696 14 C 0.541 3.459 15 O -0.561 6.561 16 C -0.131 4.131 17 S -0.152 6.152 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.015 3.985 21 N -0.911 5.911 22 Si 0.995 3.005 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.258 1.258 26 C 0.097 3.903 27 H 0.253 0.747 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.419 0.581 31 H 0.157 0.843 32 H 0.163 0.837 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.422 0.578 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.270 0.730 40 H 0.072 0.928 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.804 24.092 2.170 30.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.248 4.248 3 C 0.109 3.891 4 N -0.371 5.371 5 C 0.297 3.703 6 O -0.428 6.428 7 C -0.188 4.188 8 C 0.328 3.672 9 O -0.431 6.431 10 N -0.385 5.385 11 C -0.030 4.030 12 C 0.004 3.996 13 N -0.350 5.350 14 C 0.328 3.672 15 O -0.438 6.438 16 C -0.282 4.282 17 S 0.075 5.925 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.190 4.190 21 N -0.548 5.548 22 Si 0.817 3.183 23 H -0.193 1.193 24 H -0.206 1.206 25 H -0.182 1.182 26 C -0.026 4.026 27 H 0.269 0.731 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.256 0.744 31 H 0.175 0.825 32 H 0.181 0.819 33 H 0.137 0.863 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.261 0.739 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -17.796 24.495 -0.239 30.277 hybrid contribution 0.949 -0.254 1.926 2.162 sum -16.847 24.241 1.687 29.568 Atomic orbital electron populations 1.25855 0.96694 0.95798 0.98039 1.22933 0.94382 1.04349 1.03134 1.17916 0.83887 0.87768 0.99488 1.45818 1.06525 1.21600 1.63199 1.20493 0.82139 0.88578 0.79055 1.90880 1.55916 1.47545 1.48466 1.21551 0.91323 0.98254 1.07646 1.20131 0.90180 0.79728 0.77167 1.90870 1.70796 1.34692 1.46778 1.49310 1.09785 1.19398 1.60029 1.23797 0.98922 0.79662 1.00600 1.22673 0.93470 0.88535 0.94968 1.45442 1.58444 1.05990 1.25159 1.20034 0.78396 0.82955 0.85859 1.90713 1.48956 1.75274 1.28867 1.23390 1.04455 0.98158 1.02224 1.85583 1.75003 0.99273 1.32649 1.23221 1.41637 0.96426 1.08036 0.89805 1.26073 0.96500 0.97203 0.99227 1.70176 1.45335 1.08223 1.31061 0.84998 0.78199 0.77631 0.77442 1.19310 1.20607 1.18228 1.23413 0.84446 0.90960 1.03787 0.73083 0.89718 0.89937 0.74358 0.82504 0.81914 0.86271 0.87934 0.87308 0.73946 0.87158 0.86596 0.92089 0.90966 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 19.25 74.32 1.43 0.41 16 2 C -0.25 -2.68 13.46 31.12 0.42 -2.26 16 3 C 0.23 3.01 6.15 84.57 0.52 3.53 16 4 N -0.72 -7.90 5.54 -472.13 -2.61 -10.51 16 5 C 0.51 9.06 7.82 87.66 0.69 9.75 16 6 O -0.55 -16.69 14.18 20.40 0.29 -16.40 16 7 C -0.15 -1.54 6.01 29.10 0.18 -1.37 16 8 C 0.54 11.29 8.07 87.66 0.71 12.00 16 9 O -0.55 -18.46 14.95 20.42 0.31 -18.15 16 10 N -0.65 -10.38 3.69 -857.80 -3.16 -13.54 16 11 C 0.09 0.99 8.25 83.26 0.69 1.68 16 12 C 0.11 1.85 4.62 45.56 0.21 2.06 16 13 N -0.70 -12.79 5.39 -441.47 -2.38 -15.17 16 14 C 0.54 16.83 7.85 87.66 0.69 17.51 16 15 O -0.56 -23.00 15.45 -3.03 -0.05 -23.04 16 16 C -0.13 -4.56 6.16 71.24 0.44 -4.13 16 17 S -0.15 -7.97 20.57 -56.49 -1.16 -9.13 16 18 C -0.55 -29.82 9.50 67.96 0.65 -29.17 16 19 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 20 C 0.01 0.81 5.49 84.86 0.47 1.28 16 21 N -0.91 -54.57 13.22 21.65 0.29 -54.28 16 22 Si 1.00 42.21 29.55 68.60 2.03 44.24 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 24 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 26 C 0.10 1.48 8.38 83.18 0.70 2.18 16 27 H 0.25 -0.21 7.80 -4.43 -0.03 -0.25 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.42 1.82 8.45 -92.71 -0.78 1.04 16 31 H 0.16 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.16 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.11 2.46 7.45 -2.38 -0.02 2.44 16 36 H 0.42 4.63 8.76 -92.71 -0.81 3.82 16 37 H 0.11 3.45 8.14 -2.40 -0.02 3.43 16 38 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 39 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 40 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -94.20 384.86 0.80 -93.41 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -0.51 Total: 9.10 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 7.77 Total: 13.48 kcal Atomic # 7 Polarization: -85.64 SS G_CDS: -7.87 Total: -93.51 kcal Atomic # 8 Polarization: -58.14 SS G_CDS: 0.55 Total: -57.59 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: -7.97 SS G_CDS: -1.16 Total: -9.13 kcal Total: -94.20 0.80 -93.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297002730.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.486 kcal (2) G-P(sol) polarization free energy of solvation -94.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds