Wall clock time and date at job start Tue Mar 31 2020 22:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41271 * 128.07187 * 2 1 4 4 N 1.30134 * 106.58677 * 179.83557 * 3 2 1 5 5 O 1.20881 * 111.98466 * 0.45765 * 4 3 2 6 6 C 1.34645 * 111.46627 * 359.70074 * 5 4 3 7 7 C 1.47516 * 126.94308 * 179.97438 * 6 5 4 8 8 O 1.21589 * 119.99948 * 180.02562 * 7 6 5 9 9 N 1.34780 * 120.00026 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99786 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46735 * 184.94380 * 10 9 7 12 12 H 1.09006 * 112.95768 * 308.98121 * 11 10 9 13 13 C 1.53950 * 113.76661 * 177.31258 * 11 10 9 14 14 C 1.53950 * 86.28424 * 222.08542 * 13 11 10 15 15 N 1.47579 * 113.77527 * 80.66486 * 11 10 9 16 16 C 1.34778 * 134.49067 * 318.93240 * 15 11 10 17 17 O 1.21280 * 120.00110 * 5.08597 * 16 15 11 18 18 C 1.50698 * 119.99548 * 185.08876 * 16 15 11 19 19 S 1.81008 * 109.46734 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99818 * 179.97438 * 19 18 16 21 21 H 1.07996 * 120.00067 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99742 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99724 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99750 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47129 * 90.00560 * 24 22 20 26 26 H 1.48497 * 109.47033 * 210.00495 * 24 22 20 27 27 H 1.48504 * 109.47105 * 330.00327 * 24 22 20 28 28 H 1.08996 * 109.47106 * 269.67804 * 1 2 3 29 29 H 1.09000 * 109.46396 * 149.67853 * 1 2 3 30 30 H 1.08994 * 109.47232 * 29.67953 * 1 2 3 31 31 H 1.08001 * 126.70674 * 359.97438 * 3 2 1 32 32 H 0.96994 * 119.99793 * 0.02562 * 9 7 6 33 33 H 1.09007 * 109.46929 * 304.93376 * 10 9 7 34 34 H 1.08990 * 109.47306 * 64.93746 * 10 9 7 35 35 H 1.08996 * 113.74225 * 336.42828 * 13 11 10 36 36 H 1.09001 * 113.74353 * 107.74276 * 13 11 10 37 37 H 1.08997 * 113.76720 * 137.90806 * 14 13 11 38 38 H 1.09004 * 113.76689 * 269.19045 * 14 13 11 39 39 H 1.08997 * 109.47186 * 299.99320 * 18 16 15 40 40 H 1.09000 * 109.47113 * 60.00135 * 18 16 15 41 41 H 0.97001 * 119.99707 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1121 0.0000 4 7 3.5891 0.6355 0.0036 5 8 3.5996 -0.5732 -0.0032 6 6 2.3509 -1.0769 -0.0060 7 6 1.9698 -2.5019 -0.0145 8 8 0.7954 -2.8171 -0.0166 9 7 2.9232 -3.4546 -0.0199 10 6 2.5446 -4.8697 -0.0290 11 6 3.8011 -5.7345 0.0907 12 1 4.5720 -5.4666 -0.6319 13 6 3.5107 -7.2450 0.1569 14 6 4.5884 -7.3023 1.2548 15 7 4.3017 -5.8687 1.4725 16 6 4.4402 -5.0235 2.5131 17 8 4.0250 -3.8870 2.4307 18 6 5.1112 -5.4908 3.7790 19 16 5.1444 -4.1364 4.9794 20 6 5.9575 -4.9373 6.3218 21 1 6.2658 -5.9682 6.2289 22 6 6.2029 -4.2430 7.4984 23 7 5.8276 -2.9864 7.6114 24 14 7.0655 -5.0918 8.9212 25 1 8.5329 -4.9015 8.7950 26 1 6.5989 -4.5060 10.2035 27 1 6.7506 -6.5429 8.8963 28 1 -0.3633 -0.0058 1.0276 29 1 -0.3632 -0.8871 -0.5188 30 1 -0.3633 0.8928 -0.5088 31 1 2.0946 2.1543 -0.0004 32 1 3.8600 -3.2031 -0.0179 33 1 1.8817 -5.0739 0.8120 34 1 2.0307 -5.1024 -0.9615 35 1 2.5086 -7.4840 0.5127 36 1 3.7804 -7.7840 -0.7513 37 1 4.3218 -7.9379 2.0992 38 1 5.5917 -7.4971 0.8759 39 1 4.5566 -6.3319 4.1950 40 1 6.1314 -5.8029 3.5556 41 1 5.9987 -2.5012 8.4337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001299093488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:38 Heat of formation + Delta-G solvation = 2.971379 kcal Electronic energy + Delta-G solvation = -26710.009424 eV Core-core repulsion = 22720.148264 eV Total energy + Delta-G solvation = -3989.861160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.06411 -41.49542 -40.48038 -38.68375 -36.20561 -35.44676 -34.61632 -33.45827 -32.10693 -30.11789 -29.35480 -28.84802 -27.66802 -25.40606 -24.13437 -23.05143 -22.95907 -21.71557 -20.38713 -19.86100 -19.17503 -18.84359 -17.89439 -17.52483 -17.11939 -16.91130 -16.82650 -16.48253 -16.20876 -15.77741 -15.71709 -15.13176 -14.72472 -14.62876 -14.47222 -14.23144 -14.17569 -13.75573 -13.62914 -13.43465 -13.27362 -13.13962 -13.03542 -12.90911 -12.62464 -12.32670 -12.30132 -12.06185 -11.74792 -11.47404 -11.38185 -11.16961 -10.70275 -10.61961 -10.29579 -10.13283 -9.67739 -8.69309 -8.37465 -6.15660 -0.31048 1.04021 1.21272 1.39988 1.40834 1.49901 1.54395 1.66133 1.89509 1.97929 2.22482 2.25871 2.96729 3.16708 3.22131 3.43957 3.57756 3.67800 3.71413 3.76262 3.96832 4.05852 4.21928 4.26470 4.29012 4.41543 4.46086 4.51682 4.71198 4.73210 4.76142 4.77608 4.90197 5.04383 5.08442 5.17448 5.28913 5.37930 5.38250 6.16433 6.19076 6.64987 6.83251 6.99634 7.03664 7.20437 8.71753 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010145 B = 0.003308 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.235622 B = 8462.270546 C =10595.794487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.126 4.126 3 C -0.003 4.003 4 N -0.369 5.369 5 O 0.099 5.901 6 C -0.108 4.108 7 C 0.607 3.393 8 O -0.544 6.544 9 N -0.690 5.690 10 C 0.119 3.881 11 C 0.118 3.882 12 H 0.125 0.875 13 C -0.116 4.116 14 C 0.096 3.904 15 N -0.650 5.650 16 C 0.548 3.452 17 O -0.551 6.551 18 C -0.119 4.119 19 S -0.151 6.151 20 C -0.547 4.547 21 H 0.081 0.919 22 C 0.014 3.986 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.257 1.257 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.237 0.763 32 H 0.409 0.591 33 H 0.051 0.949 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.131 0.869 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.706 -6.455 -22.173 24.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.131 4.131 3 C -0.180 4.180 4 N -0.071 5.071 5 O 0.029 5.971 6 C -0.174 4.174 7 C 0.391 3.609 8 O -0.424 6.424 9 N -0.339 5.339 10 C -0.004 4.004 11 C 0.015 3.985 12 H 0.142 0.858 13 C -0.154 4.154 14 C -0.026 4.026 15 N -0.388 5.388 16 C 0.337 3.663 17 O -0.429 6.429 18 C -0.270 4.270 19 S 0.077 5.923 20 C -0.695 4.695 21 H 0.099 0.901 22 C -0.191 4.191 23 N -0.549 5.549 24 Si 0.820 3.180 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.181 1.181 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.126 0.874 31 H 0.253 0.747 32 H 0.245 0.755 33 H 0.070 0.930 34 H 0.127 0.873 35 H 0.116 0.884 36 H 0.149 0.851 37 H 0.105 0.895 38 H 0.128 0.872 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.912 -4.227 -22.022 23.465 hybrid contribution 0.827 -1.101 1.545 2.070 sum -6.085 -5.328 -20.477 22.017 Atomic orbital electron populations 1.20383 0.84668 1.04976 1.03752 1.22091 1.00207 0.90012 1.00769 1.25640 0.86624 1.03561 1.02213 1.73748 1.24687 0.91307 1.17397 1.84949 1.28503 1.15780 1.67841 1.24176 0.85145 0.96722 1.11328 1.16510 0.85510 0.82037 0.76878 1.90783 1.17931 1.81164 1.52497 1.45697 1.09733 1.06614 1.71854 1.21763 0.97290 0.78225 1.03103 1.23477 0.94802 0.97363 0.82859 0.85757 1.23491 1.00086 0.91302 1.00540 1.23565 1.01012 0.79110 0.98864 1.50417 1.64257 1.12825 1.11341 1.19681 0.78192 0.84342 0.84087 1.90702 1.49528 1.20214 1.82422 1.23273 1.03800 1.03456 0.96501 1.85576 1.78191 1.17742 1.10826 1.23194 1.44273 1.00953 1.01059 0.90105 1.26138 0.96098 0.95528 1.01334 1.70191 1.45702 1.10714 1.28252 0.84954 0.78256 0.78635 0.76143 1.19200 1.20264 1.18113 0.90205 0.90438 0.87429 0.74652 0.75494 0.93019 0.87271 0.88419 0.85137 0.89450 0.87164 0.88454 0.88085 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.59 9.96 71.24 0.71 -0.88 16 2 C -0.13 -3.20 6.37 -19.45 -0.12 -3.33 16 3 C 0.00 -0.06 12.14 85.69 1.04 0.98 16 4 N -0.37 -11.13 12.04 -58.53 -0.70 -11.84 16 5 O 0.10 3.14 11.04 65.80 0.73 3.87 16 6 C -0.11 -3.27 7.29 24.39 0.18 -3.10 16 7 C 0.61 18.73 7.82 86.69 0.68 19.41 16 8 O -0.54 -18.40 15.11 -4.00 -0.06 -18.46 16 9 N -0.69 -18.37 4.18 -466.29 -1.95 -20.32 16 10 C 0.12 2.48 5.22 86.38 0.45 2.93 16 11 C 0.12 1.80 4.29 45.10 0.19 1.99 16 12 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 13 C -0.12 -0.92 7.86 31.25 0.25 -0.67 16 14 C 0.10 1.22 8.63 86.44 0.75 1.96 16 15 N -0.65 -15.27 3.50 -810.59 -2.84 -18.10 16 16 C 0.55 20.07 7.99 87.66 0.70 20.77 16 17 O -0.55 -24.61 14.40 -3.03 -0.04 -24.66 16 18 C -0.12 -4.84 5.92 71.24 0.42 -4.42 16 19 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 20 C -0.55 -31.77 9.50 67.95 0.65 -31.12 16 21 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 22 C 0.01 0.79 5.49 84.86 0.47 1.26 16 23 N -0.91 -57.02 13.22 21.65 0.29 -56.73 16 24 Si 1.00 44.10 29.55 68.60 2.03 46.13 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.08 1.72 6.73 -2.39 -0.02 1.71 16 30 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.24 3.22 8.06 -2.91 -0.02 3.20 16 32 H 0.41 10.90 7.96 -92.71 -0.74 10.16 16 33 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.10 0.85 8.10 -2.39 -0.02 0.83 16 36 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.11 0.94 8.14 -2.38 -0.02 0.93 16 39 H 0.10 3.68 8.14 -2.40 -0.02 3.66 16 40 H 0.10 3.77 8.14 -2.40 -0.02 3.75 16 41 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -86.76 371.79 2.97 -83.79 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.34 Total: 20.24 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 6.35 Total: 5.78 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -5.20 Total: -106.99 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: 0.62 Total: -39.25 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -86.76 2.97 -83.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001299093488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.759 kcal (2) G-P(sol) polarization free energy of solvation -86.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds