Wall clock time and date at job start Tue Mar 31 2020 22:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41264 * 128.07666 * 2 1 4 4 N 1.30130 * 106.58693 * 179.97438 * 3 2 1 5 5 O 1.20888 * 111.98801 * 359.70002 * 4 3 2 6 6 C 1.34650 * 111.46111 * 0.49110 * 5 4 3 7 7 C 1.47511 * 126.93570 * 179.78599 * 6 5 4 8 8 O 1.21594 * 119.99230 * 179.68405 * 7 6 5 9 9 N 1.34767 * 120.00612 * 359.41806 * 7 6 5 10 10 C 1.46504 * 120.00147 * 180.27684 * 9 7 6 11 11 C 1.52996 * 109.47192 * 175.01477 * 10 9 7 12 12 H 1.09002 * 112.73844 * 314.98365 * 11 10 9 13 13 C 1.53499 * 113.46926 * 85.80273 * 11 10 9 14 14 C 1.53497 * 83.34335 * 140.84982 * 13 11 10 15 15 N 1.47060 * 113.46971 * 184.23998 * 11 10 9 16 16 C 1.34783 * 136.05775 * 38.13079 * 15 11 10 17 17 O 1.21285 * 119.99765 * 5.03848 * 16 15 11 18 18 C 1.50700 * 119.99968 * 185.03617 * 16 15 11 19 19 S 1.81004 * 109.46811 * 180.02562 * 18 16 15 20 20 C 1.76203 * 100.00080 * 180.02562 * 19 18 16 21 21 H 1.08005 * 119.99543 * 359.97438 * 20 19 18 22 22 C 1.38788 * 120.00278 * 180.02562 * 20 19 18 23 23 N 1.31634 * 120.00012 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00400 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47175 * 59.99775 * 24 22 20 26 26 H 1.48496 * 109.47739 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46939 * 300.00168 * 24 22 20 28 28 H 1.09007 * 109.46751 * 270.02209 * 1 2 3 29 29 H 1.09003 * 109.47034 * 30.02375 * 1 2 3 30 30 H 1.08997 * 109.46773 * 150.02403 * 1 2 3 31 31 H 1.07997 * 126.70738 * 359.96490 * 3 2 1 32 32 H 0.97004 * 119.99950 * 0.26963 * 9 7 6 33 33 H 1.09002 * 109.46428 * 295.01010 * 10 9 7 34 34 H 1.08999 * 109.47415 * 55.01167 * 10 9 7 35 35 H 1.09005 * 114.20584 * 254.43421 * 13 11 10 36 36 H 1.08996 * 114.20580 * 27.26197 * 13 11 10 37 37 H 1.08998 * 113.46945 * 219.15381 * 14 13 11 38 38 H 1.08996 * 113.52287 * 88.72092 * 14 13 11 39 39 H 1.08997 * 109.47444 * 299.99684 * 18 16 15 40 40 H 1.09002 * 109.46904 * 60.00406 * 18 16 15 41 41 H 0.97002 * 120.00348 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5890 0.6353 0.0006 5 8 3.5995 -0.5735 0.0068 6 6 2.3508 -1.0771 0.0006 7 6 1.9696 -2.5021 0.0007 8 8 0.7952 -2.8172 0.0005 9 7 2.9229 -3.4547 -0.0042 10 6 2.5442 -4.8700 -0.0102 11 6 3.8004 -5.7335 -0.1404 12 1 4.4873 -5.3659 -0.9028 13 6 4.4795 -6.0313 1.2036 14 6 4.6961 -7.4186 0.5836 15 7 3.5135 -7.1713 -0.2549 16 6 2.5786 -7.9290 -0.8619 17 8 1.7518 -7.4106 -1.5820 18 6 2.5607 -9.4203 -0.6458 19 16 1.1988 -10.1502 -1.5885 20 6 1.4078 -11.8475 -1.1639 21 1 2.2063 -12.1435 -0.4996 22 6 0.5470 -12.8040 -1.6838 23 7 -0.4259 -12.4432 -2.4938 24 14 0.7689 -14.6035 -1.2342 25 1 0.6396 -14.7659 0.2363 26 1 -0.2705 -15.4159 -1.9157 27 1 2.1147 -15.0592 -1.6660 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 2.0947 2.1541 -0.0005 32 1 3.8598 -3.2033 -0.0040 33 1 2.0313 -5.1127 0.9205 34 1 1.8804 -5.0650 -0.8525 35 1 5.3981 -5.4697 1.3744 36 1 3.8024 -6.0242 2.0577 37 1 4.5627 -8.2363 1.2919 38 1 5.6221 -7.5011 0.0145 39 1 3.5052 -9.8477 -0.9825 40 1 2.4235 -9.6321 0.4147 41 1 -1.0277 -13.1117 -2.8569 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001299093489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:43 Heat of formation + Delta-G solvation = 33.462978 kcal Electronic energy + Delta-G solvation = -25761.368916 eV Core-core repulsion = 21772.829970 eV Total energy + Delta-G solvation = -3988.538946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.43226 -40.70545 -39.70064 -37.58804 -35.54197 -34.75078 -32.78610 -32.43954 -30.83777 -29.36162 -28.32809 -28.04044 -25.49044 -24.62276 -23.41290 -22.45112 -22.09740 -21.05142 -19.48399 -18.62288 -18.19424 -17.74122 -16.82759 -16.58740 -16.21063 -15.56549 -15.52159 -15.26367 -14.81192 -14.76967 -14.33907 -14.01352 -13.85390 -13.81160 -13.61269 -13.54935 -13.03694 -12.95906 -12.75399 -12.50871 -12.23824 -11.98510 -11.70255 -11.68475 -11.06896 -11.04587 -10.91564 -10.81147 -10.77821 -10.58523 -9.91665 -9.84520 -9.55173 -9.29915 -9.07017 -8.72129 -8.25846 -6.51896 -6.22308 -3.93602 0.39422 1.64232 2.13441 2.55506 2.63988 2.91700 3.04855 3.22873 3.24537 3.28492 3.54541 3.73197 4.00985 4.16778 4.19191 4.32633 4.48083 4.59840 4.62406 4.74917 4.88815 4.90419 5.11044 5.12716 5.25717 5.28983 5.29247 5.42315 5.45859 5.48986 5.54886 5.71947 5.77069 5.81815 5.89321 5.90327 6.10509 6.13139 6.91958 7.56008 7.58143 7.69182 7.77323 8.33931 8.47770 9.22595 10.85016 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023888 B = 0.001985 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.870231 B =14102.660369 C =15024.138507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.117 4.117 3 C -0.014 4.014 4 N -0.343 5.343 5 O 0.115 5.885 6 C -0.093 4.093 7 C 0.605 3.395 8 O -0.500 6.500 9 N -0.710 5.710 10 C 0.111 3.889 11 C 0.122 3.878 12 H 0.097 0.903 13 C -0.153 4.153 14 C 0.101 3.899 15 N -0.647 5.647 16 C 0.561 3.439 17 O -0.509 6.509 18 C -0.144 4.144 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.199 0.801 32 H 0.406 0.594 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.622 24.106 9.259 28.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C -0.192 4.192 4 N -0.042 5.042 5 O 0.042 5.958 6 C -0.159 4.159 7 C 0.388 3.612 8 O -0.375 6.375 9 N -0.362 5.362 10 C -0.013 4.013 11 C 0.018 3.982 12 H 0.115 0.885 13 C -0.191 4.191 14 C -0.022 4.022 15 N -0.387 5.387 16 C 0.351 3.649 17 O -0.382 6.382 18 C -0.294 4.294 19 S 0.168 5.832 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.746 3.254 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.216 0.784 32 H 0.241 0.759 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.384 24.952 7.937 28.168 hybrid contribution 0.938 -1.667 1.034 2.174 sum 11.322 23.285 8.971 27.401 Atomic orbital electron populations 1.20373 0.86162 1.04439 1.03621 1.21692 0.99186 0.90250 1.01050 1.25030 0.87679 1.02189 1.04312 1.73757 1.23122 0.91187 1.16115 1.84946 1.28153 1.15559 1.67181 1.24021 0.84702 0.96167 1.10966 1.16432 0.85730 0.81385 0.77653 1.90916 1.17081 1.80354 1.49139 1.45684 1.09674 1.06423 1.74463 1.21731 0.97302 0.77501 1.04739 1.22759 0.95105 0.83322 0.97035 0.88516 1.23618 1.01732 0.97068 0.96663 1.22885 0.88698 0.98228 0.92372 1.49762 1.28087 1.06617 1.54212 1.20033 0.79193 0.88134 0.77527 1.90731 1.38052 1.73802 1.35586 1.23469 1.07124 0.92859 1.05998 1.85434 1.33709 1.03793 1.60276 1.22809 1.19041 0.92005 1.34591 0.90966 1.24994 0.94458 0.99549 0.94575 1.70008 1.15942 1.34662 1.29605 0.86216 0.78063 0.82443 0.78726 1.19919 1.20791 1.19945 0.89983 0.90618 0.88929 0.78403 0.75907 0.90234 0.88582 0.89062 0.88318 0.89923 0.89644 0.89334 0.89199 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.65 9.96 36.01 0.36 -0.29 16 2 C -0.12 -1.00 6.37 -103.99 -0.66 -1.66 16 3 C -0.01 -0.11 12.14 -17.12 -0.21 -0.32 16 4 N -0.34 -3.19 12.04 30.46 0.37 -2.83 16 5 O 0.11 1.03 11.04 15.53 0.17 1.20 16 6 C -0.09 -0.88 7.29 -36.32 -0.26 -1.15 16 7 C 0.61 6.67 7.82 -12.48 -0.10 6.57 16 8 O -0.50 -7.27 15.11 5.28 0.08 -7.19 16 9 N -0.71 -6.27 5.55 -61.36 -0.34 -6.62 16 10 C 0.11 1.25 5.47 -4.04 -0.02 1.22 16 11 C 0.12 1.15 4.07 -72.40 -0.29 0.86 16 12 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 13 C -0.15 -0.96 8.02 -26.22 -0.21 -1.17 16 14 C 0.10 0.85 8.42 -8.51 -0.07 0.78 16 15 N -0.65 -8.50 3.57 -177.45 -0.63 -9.14 16 16 C 0.56 10.53 7.97 -10.98 -0.09 10.45 16 17 O -0.51 -11.56 15.46 5.55 0.09 -11.48 16 18 C -0.14 -2.92 5.99 36.01 0.22 -2.70 16 19 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 20 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 21 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 24 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.87 6.73 -51.93 -0.35 0.52 16 31 H 0.20 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.41 2.32 8.31 -40.82 -0.34 1.98 16 33 H 0.08 0.95 7.89 -51.93 -0.41 0.54 16 34 H 0.10 1.48 7.14 -51.93 -0.37 1.11 16 35 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.10 0.65 7.95 -51.93 -0.41 0.24 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 40 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 373.26 15.07 5.63 5.63 Total: -1.00 -37.12 373.26 -7.52 -44.64 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.23 Total: -0.94 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -1.15 Total: -0.36 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.13 Total: -44.02 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.34 Total: -17.46 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.12 -7.52 -44.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001299093489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.105 kcal (2) G-P(sol) polarization free energy of solvation -37.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds