Wall clock time and date at job start Tue Mar 31 2020 22:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41264 * 128.07666 * 2 1 4 4 N 1.30130 * 106.58693 * 179.97438 * 3 2 1 5 5 O 1.20888 * 111.98801 * 359.70002 * 4 3 2 6 6 C 1.34650 * 111.46111 * 0.49110 * 5 4 3 7 7 C 1.47511 * 126.93570 * 179.78599 * 6 5 4 8 8 O 1.21594 * 119.99230 * 179.68405 * 7 6 5 9 9 N 1.34767 * 120.00612 * 359.41806 * 7 6 5 10 10 C 1.46504 * 120.00147 * 180.27684 * 9 7 6 11 11 C 1.52996 * 109.47192 * 175.01477 * 10 9 7 12 12 H 1.09002 * 112.73844 * 314.98365 * 11 10 9 13 13 C 1.53499 * 113.46926 * 85.80273 * 11 10 9 14 14 C 1.53497 * 83.34335 * 140.84982 * 13 11 10 15 15 N 1.47060 * 113.46971 * 184.23998 * 11 10 9 16 16 C 1.34783 * 136.05775 * 38.13079 * 15 11 10 17 17 O 1.21285 * 119.99765 * 5.03848 * 16 15 11 18 18 C 1.50700 * 119.99968 * 185.03617 * 16 15 11 19 19 S 1.81004 * 109.46811 * 180.02562 * 18 16 15 20 20 C 1.76203 * 100.00080 * 180.02562 * 19 18 16 21 21 H 1.08005 * 119.99543 * 359.97438 * 20 19 18 22 22 C 1.38788 * 120.00278 * 180.02562 * 20 19 18 23 23 N 1.31634 * 120.00012 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00400 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47175 * 59.99775 * 24 22 20 26 26 H 1.48496 * 109.47739 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46939 * 300.00168 * 24 22 20 28 28 H 1.09007 * 109.46751 * 270.02209 * 1 2 3 29 29 H 1.09003 * 109.47034 * 30.02375 * 1 2 3 30 30 H 1.08997 * 109.46773 * 150.02403 * 1 2 3 31 31 H 1.07997 * 126.70738 * 359.96490 * 3 2 1 32 32 H 0.97004 * 119.99950 * 0.26963 * 9 7 6 33 33 H 1.09002 * 109.46428 * 295.01010 * 10 9 7 34 34 H 1.08999 * 109.47415 * 55.01167 * 10 9 7 35 35 H 1.09005 * 114.20584 * 254.43421 * 13 11 10 36 36 H 1.08996 * 114.20580 * 27.26197 * 13 11 10 37 37 H 1.08998 * 113.46945 * 219.15381 * 14 13 11 38 38 H 1.08996 * 113.52287 * 88.72092 * 14 13 11 39 39 H 1.08997 * 109.47444 * 299.99684 * 18 16 15 40 40 H 1.09002 * 109.46904 * 60.00406 * 18 16 15 41 41 H 0.97002 * 120.00348 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5890 0.6353 0.0006 5 8 3.5995 -0.5735 0.0068 6 6 2.3508 -1.0771 0.0006 7 6 1.9696 -2.5021 0.0007 8 8 0.7952 -2.8172 0.0005 9 7 2.9229 -3.4547 -0.0042 10 6 2.5442 -4.8700 -0.0102 11 6 3.8004 -5.7335 -0.1404 12 1 4.4873 -5.3659 -0.9028 13 6 4.4795 -6.0313 1.2036 14 6 4.6961 -7.4186 0.5836 15 7 3.5135 -7.1713 -0.2549 16 6 2.5786 -7.9290 -0.8619 17 8 1.7518 -7.4106 -1.5820 18 6 2.5607 -9.4203 -0.6458 19 16 1.1988 -10.1502 -1.5885 20 6 1.4078 -11.8475 -1.1639 21 1 2.2063 -12.1435 -0.4996 22 6 0.5470 -12.8040 -1.6838 23 7 -0.4259 -12.4432 -2.4938 24 14 0.7689 -14.6035 -1.2342 25 1 0.6396 -14.7659 0.2363 26 1 -0.2705 -15.4159 -1.9157 27 1 2.1147 -15.0592 -1.6660 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 2.0947 2.1541 -0.0005 32 1 3.8598 -3.2033 -0.0040 33 1 2.0313 -5.1127 0.9205 34 1 1.8804 -5.0650 -0.8525 35 1 5.3981 -5.4697 1.3744 36 1 3.8024 -6.0242 2.0577 37 1 4.5627 -8.2363 1.2919 38 1 5.6221 -7.5011 0.0145 39 1 3.5052 -9.8477 -0.9825 40 1 2.4235 -9.6321 0.4147 41 1 -1.0277 -13.1117 -2.8569 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001299093489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:42 Heat of formation + Delta-G solvation = 5.432240 kcal Electronic energy + Delta-G solvation = -25762.584420 eV Core-core repulsion = 21772.829970 eV Total energy + Delta-G solvation = -3989.754450 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.08989 -41.67225 -40.66698 -38.91344 -36.31985 -35.55136 -34.59925 -33.49481 -32.16421 -30.16649 -29.46067 -28.88391 -27.65613 -25.37905 -24.12164 -23.25561 -23.00433 -21.84128 -20.44378 -19.88348 -19.30322 -18.87402 -18.00318 -17.60910 -17.08694 -16.89323 -16.68676 -16.51983 -16.37434 -15.79310 -15.70722 -15.24817 -14.81508 -14.68152 -14.52149 -14.26260 -14.17743 -13.92182 -13.80533 -13.65757 -13.38916 -13.17095 -13.00032 -12.86958 -12.63987 -12.40116 -12.33990 -11.76600 -11.75026 -11.47884 -11.43595 -11.13939 -10.87963 -10.66964 -10.30476 -10.26684 -9.78833 -8.69777 -8.35469 -6.14848 -0.35190 1.02811 1.14953 1.34939 1.43566 1.45512 1.53294 1.57318 1.79315 1.87310 2.24399 2.27323 2.98402 3.14779 3.19652 3.34665 3.54070 3.62693 3.67999 3.75201 3.93177 3.99370 4.03811 4.24954 4.28266 4.44689 4.48854 4.60060 4.67285 4.70321 4.72840 4.77954 4.86821 4.92703 5.01199 5.11178 5.26106 5.34167 5.39843 6.15288 6.18262 6.61031 6.82904 6.97147 7.05124 7.10960 8.73571 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023888 B = 0.001985 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.870231 B =14102.660369 C =15024.138507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.120 4.120 3 C -0.001 4.001 4 N -0.360 5.360 5 O 0.115 5.885 6 C -0.105 4.105 7 C 0.604 3.396 8 O -0.544 6.544 9 N -0.691 5.691 10 C 0.119 3.881 11 C 0.119 3.881 12 H 0.123 0.877 13 C -0.126 4.126 14 C 0.095 3.905 15 N -0.650 5.650 16 C 0.557 3.443 17 O -0.565 6.565 18 C -0.117 4.117 19 S -0.154 6.154 20 C -0.546 4.546 21 H 0.084 0.916 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 1.001 2.999 25 H -0.261 1.261 26 H -0.279 1.279 27 H -0.261 1.261 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.234 0.766 32 H 0.424 0.576 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.138 0.862 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.789 25.031 11.289 31.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C -0.178 4.178 4 N -0.060 5.060 5 O 0.043 5.957 6 C -0.171 4.171 7 C 0.388 3.612 8 O -0.422 6.422 9 N -0.344 5.344 10 C -0.005 4.005 11 C 0.015 3.985 12 H 0.140 0.860 13 C -0.163 4.163 14 C -0.026 4.026 15 N -0.387 5.387 16 C 0.346 3.654 17 O -0.443 6.443 18 C -0.268 4.268 19 S 0.073 5.927 20 C -0.694 4.694 21 H 0.102 0.898 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.822 3.178 25 H -0.186 1.186 26 H -0.204 1.204 27 H -0.185 1.185 28 H 0.108 0.892 29 H 0.121 0.879 30 H 0.085 0.915 31 H 0.251 0.749 32 H 0.263 0.737 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.156 0.844 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.131 0.869 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.664 25.902 10.016 30.950 hybrid contribution 0.047 -1.763 0.457 1.822 sum 13.710 24.138 10.473 29.670 Atomic orbital electron populations 1.20400 0.85521 1.04466 1.04100 1.22008 0.99819 0.90496 1.00139 1.25550 0.86524 1.03381 1.02360 1.73739 1.24090 0.91230 1.16955 1.84937 1.27571 1.15604 1.67610 1.23768 0.85502 0.95483 1.12352 1.16652 0.85349 0.82284 0.76889 1.90900 1.18884 1.81201 1.51199 1.45461 1.10390 1.05159 1.73388 1.21467 0.97783 0.79103 1.02172 1.23183 0.94448 0.80658 1.00201 0.85990 1.23586 1.02919 0.95594 0.94187 1.23354 0.87432 0.99831 0.92028 1.49810 1.27877 1.08510 1.52506 1.19700 0.80157 0.87768 0.77785 1.90709 1.40744 1.74468 1.38416 1.23250 1.04219 0.94091 1.05226 1.85640 1.38632 1.05463 1.62977 1.23153 1.19451 0.92042 1.34736 0.89838 1.26172 0.93834 1.05096 0.94185 1.70188 1.17123 1.36460 1.31042 0.84975 0.78495 0.75437 0.78908 1.18571 1.20413 1.18515 0.89237 0.87913 0.91517 0.74920 0.73721 0.91240 0.93368 0.84445 0.88418 0.89261 0.86851 0.87582 0.87676 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.23 9.96 71.24 0.71 -0.52 16 2 C -0.12 -1.93 6.37 -19.45 -0.12 -2.05 16 3 C 0.00 -0.01 12.14 85.69 1.04 1.03 16 4 N -0.36 -6.02 12.04 -58.53 -0.70 -6.72 16 5 O 0.11 1.90 11.04 65.74 0.73 2.63 16 6 C -0.11 -1.96 7.29 24.39 0.18 -1.78 16 7 C 0.60 13.69 7.82 86.69 0.68 14.36 16 8 O -0.54 -16.92 15.11 -4.01 -0.06 -16.98 16 9 N -0.69 -11.95 5.55 -466.30 -2.59 -14.53 16 10 C 0.12 2.74 5.47 86.38 0.47 3.22 16 11 C 0.12 1.99 4.07 41.79 0.17 2.16 16 12 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 13 C -0.13 -1.04 8.02 30.93 0.25 -0.79 16 14 C 0.09 1.22 8.42 83.18 0.70 1.92 16 15 N -0.65 -16.24 3.57 -833.72 -2.97 -19.22 16 16 C 0.56 21.37 7.97 87.66 0.70 22.06 16 17 O -0.57 -27.38 15.46 -3.05 -0.05 -27.42 16 18 C -0.12 -4.77 5.99 71.24 0.43 -4.35 16 19 S -0.15 -8.78 20.57 -56.49 -1.16 -9.94 16 20 C -0.55 -31.53 9.50 67.95 0.65 -30.88 16 21 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 22 C 0.01 0.68 5.49 84.85 0.47 1.15 16 23 N -0.91 -56.77 13.22 21.65 0.29 -56.49 16 24 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 25 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 26 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 27 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 28 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 1.32 6.73 -2.39 -0.02 1.30 16 31 H 0.23 0.99 8.06 -2.91 -0.02 0.97 16 32 H 0.42 4.05 8.31 -92.71 -0.77 3.28 16 33 H 0.07 1.72 7.89 -2.39 -0.02 1.70 16 34 H 0.05 1.62 7.14 -2.39 -0.02 1.60 16 35 H 0.14 0.06 8.14 -2.38 -0.02 0.04 16 36 H 0.10 0.93 7.95 -2.39 -0.02 0.91 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 40 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 41 H 0.27 15.70 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -88.46 373.26 2.12 -86.33 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.31 Total: 11.00 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 6.31 Total: 5.53 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -5.98 Total: -96.96 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: 0.62 Total: -41.77 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.94 kcal Total: -88.46 2.12 -86.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001299093489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.766 kcal (2) G-P(sol) polarization free energy of solvation -88.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds