Wall clock time and date at job start Tue Mar 31 2020 22:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41260 * 128.08032 * 2 1 4 4 N 1.30128 * 106.59511 * 179.97438 * 3 2 1 5 5 O 1.20883 * 111.97888 * 359.72264 * 4 3 2 6 6 C 1.34647 * 111.47091 * 0.45254 * 5 4 3 7 7 C 1.47507 * 126.94619 * 179.82726 * 6 5 4 8 8 O 1.21590 * 120.00016 * 179.68753 * 7 6 5 9 9 N 1.34777 * 120.00215 * 359.68474 * 7 6 5 10 10 C 1.47585 * 134.49353 * 180.02562 * 9 7 6 11 11 C 1.53947 * 86.11441 * 155.36057 * 10 9 7 12 12 N 1.46510 * 113.74068 * 269.15382 * 11 10 9 13 13 C 1.46498 * 120.00052 * 58.07625 * 12 11 10 14 14 C 1.34770 * 119.99490 * 238.07607 * 12 11 10 15 15 O 1.21284 * 120.00553 * 0.02562 * 14 12 11 16 16 C 1.50702 * 119.99629 * 180.02562 * 14 12 11 17 17 S 1.81003 * 109.47412 * 180.02562 * 16 14 12 18 18 C 1.76194 * 100.00065 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00011 * 359.97438 * 18 17 16 20 20 C 1.38807 * 119.99684 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00125 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99784 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47201 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46885 * 120.00390 * 22 20 18 25 25 H 1.48497 * 109.47428 * 240.00190 * 22 20 18 26 26 C 1.47580 * 134.49108 * 0.02562 * 9 7 6 27 27 H 1.08998 * 109.47011 * 270.00313 * 1 2 3 28 28 H 1.09005 * 109.47013 * 29.99804 * 1 2 3 29 29 H 1.08996 * 109.47387 * 149.99774 * 1 2 3 30 30 H 1.08006 * 126.70513 * 0.03848 * 3 2 1 31 31 H 1.08996 * 113.76681 * 41.05704 * 10 9 7 32 32 H 1.08994 * 113.76726 * 269.66003 * 10 9 7 33 33 H 1.09002 * 113.73955 * 137.95260 * 11 10 9 34 34 H 1.08999 * 109.47079 * 89.99894 * 13 12 11 35 35 H 1.08993 * 109.47138 * 209.99833 * 13 12 11 36 36 H 1.09006 * 109.46966 * 329.99946 * 13 12 11 37 37 H 1.09007 * 109.47021 * 300.00003 * 16 14 12 38 38 H 1.08991 * 109.47444 * 59.99823 * 16 14 12 39 39 H 0.97003 * 120.00158 * 179.97438 * 21 20 18 40 40 H 1.08996 * 113.77201 * 90.33634 * 26 9 7 41 41 H 1.09002 * 113.76575 * 318.93589 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1119 0.0000 4 7 3.5891 0.6353 0.0006 5 8 3.5995 -0.5735 0.0063 6 6 2.3508 -1.0771 0.0006 7 6 1.9695 -2.5021 0.0013 8 8 0.7951 -2.8172 0.0014 9 7 2.9228 -3.4548 0.0018 10 6 2.9102 -4.9306 0.0021 11 6 4.3074 -4.8383 -0.6378 12 7 4.2851 -4.8181 -2.1026 13 6 3.5406 -3.7731 -2.8096 14 6 4.9496 -5.7610 -2.7995 15 8 5.5656 -6.6264 -2.2143 16 6 4.9272 -5.7400 -4.3063 17 16 5.9038 -7.1243 -4.9436 18 6 5.7099 -6.8638 -6.6754 19 1 5.1195 -6.0335 -7.0338 20 6 6.3159 -7.7258 -7.5790 21 7 7.0350 -8.7380 -7.1421 22 14 6.1097 -7.4501 -9.4150 23 1 5.2606 -6.2534 -9.6435 24 1 7.4417 -7.2374 -10.0362 25 1 5.4635 -8.6399 -10.0248 26 6 4.3986 -3.4412 0.0023 27 1 -0.3633 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 2.0948 2.1541 0.0006 31 1 2.1545 -5.3635 -0.6533 32 1 2.9120 -5.3697 0.9996 33 1 5.0233 -5.5539 -0.2335 34 1 4.1943 -2.9197 -2.9895 35 1 3.1823 -4.1635 -3.7621 36 1 2.6912 -3.4587 -2.2031 37 1 3.8986 -5.8302 -4.6556 38 1 5.3510 -4.8013 -4.6629 39 1 7.4582 -9.3406 -7.7736 40 1 4.8376 -3.4429 0.9999 41 1 4.8311 -2.6852 -0.6530 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001299314868.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:54 Heat of formation + Delta-G solvation = 47.396462 kcal Electronic energy + Delta-G solvation = -26713.772855 eV Core-core repulsion = 22725.838111 eV Total energy + Delta-G solvation = -3987.934744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.43329 -41.16067 -39.26691 -37.98551 -35.18971 -34.56255 -32.84509 -32.45168 -30.61099 -29.08854 -28.29354 -26.80624 -26.63022 -25.51990 -24.27848 -22.84691 -21.75415 -20.42138 -19.05486 -18.34750 -18.19769 -17.73520 -17.12623 -16.75206 -16.20202 -15.86756 -15.55893 -15.34679 -14.82401 -14.69854 -14.23304 -13.77336 -13.76551 -13.65462 -13.54345 -13.48176 -13.13270 -13.03865 -12.68892 -12.57453 -12.40004 -12.08792 -12.02316 -11.71184 -11.51857 -11.08599 -11.04437 -10.81396 -10.78107 -10.52558 -9.93496 -9.82917 -9.58035 -9.14966 -9.09533 -8.70204 -8.26552 -6.53397 -6.24208 -3.94991 0.36473 1.63413 2.01424 2.51742 2.59271 2.74617 2.87442 3.20329 3.23321 3.29530 3.52601 3.71995 3.84878 4.10705 4.17871 4.20822 4.45993 4.57287 4.75018 4.82276 4.93292 4.97114 5.09097 5.11200 5.13283 5.18535 5.26139 5.29356 5.33595 5.40075 5.43124 5.50026 5.63254 5.69791 5.76009 5.84779 6.09066 6.46744 7.03483 7.36566 7.39442 7.57895 7.68146 8.33111 8.40721 9.21511 10.83249 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018422 B = 0.002377 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.552854 B =11777.572208 C =12412.545844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.119 4.119 3 C -0.015 4.015 4 N -0.341 5.341 5 O 0.119 5.881 6 C -0.090 4.090 7 C 0.626 3.374 8 O -0.510 6.510 9 N -0.633 5.633 10 C 0.099 3.901 11 C 0.114 3.886 12 N -0.606 5.606 13 C 0.077 3.923 14 C 0.539 3.461 15 O -0.510 6.510 16 C -0.150 4.150 17 S -0.060 6.060 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.090 3.910 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.199 0.801 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.133 0.867 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.268 0.732 40 H 0.107 0.893 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.297 18.077 17.043 27.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C -0.193 4.193 4 N -0.040 5.040 5 O 0.046 5.954 6 C -0.156 4.156 7 C 0.413 3.587 8 O -0.386 6.386 9 N -0.369 5.369 10 C -0.023 4.023 11 C 0.008 3.992 12 N -0.341 5.341 13 C -0.067 4.067 14 C 0.327 3.673 15 O -0.384 6.384 16 C -0.301 4.301 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.034 4.034 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.216 0.784 31 H 0.111 0.889 32 H 0.122 0.878 33 H 0.151 0.849 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.125 0.875 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.845 17.181 17.831 26.647 hybrid contribution -1.630 1.452 -1.817 2.840 sum -11.474 18.633 16.014 27.116 Atomic orbital electron populations 1.20345 0.86234 1.04323 1.03486 1.21671 0.99098 0.90251 1.01374 1.25026 0.87684 1.02164 1.04421 1.73788 1.23105 0.91269 1.15814 1.85002 1.28099 1.15440 1.66908 1.23932 0.84758 0.95882 1.10980 1.16060 0.84529 0.80909 0.77206 1.90872 1.16549 1.80345 1.50881 1.50060 1.07572 1.07619 1.71617 1.23849 0.98271 0.78219 1.01984 1.22380 0.97539 0.97503 0.81770 1.47554 1.52412 1.29877 1.04244 1.21838 0.96193 0.90782 0.97854 1.20406 0.77297 0.79976 0.89596 1.90702 1.41311 1.35374 1.71002 1.23564 1.06059 1.07383 0.93055 1.85383 1.63661 1.30547 1.03771 1.22888 1.37712 1.16719 0.90948 0.90878 1.24993 0.94480 0.94459 0.99648 1.70022 1.30686 1.14475 1.35055 0.86115 0.78117 0.78305 0.82954 1.19613 1.20558 1.20551 1.23874 0.78988 0.98293 1.02200 0.90119 0.90586 0.89116 0.78406 0.88890 0.87833 0.84938 0.92661 0.90361 0.91301 0.89110 0.89103 0.92209 0.87549 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.58 9.95 36.00 0.36 -0.22 16 2 C -0.12 -1.01 6.37 -103.99 -0.66 -1.67 16 3 C -0.02 -0.12 12.14 -17.13 -0.21 -0.33 16 4 N -0.34 -3.41 12.04 30.46 0.37 -3.05 16 5 O 0.12 1.18 9.87 15.54 0.15 1.33 16 6 C -0.09 -0.88 7.22 -36.32 -0.26 -1.14 16 7 C 0.63 6.67 7.08 -12.48 -0.09 6.58 16 8 O -0.51 -6.65 15.84 5.29 0.08 -6.56 16 9 N -0.63 -5.76 2.22 -179.79 -0.40 -6.16 16 10 C 0.10 0.85 8.24 -2.97 -0.02 0.83 16 11 C 0.11 1.12 4.52 -70.14 -0.32 0.80 16 12 N -0.61 -7.72 3.09 -175.74 -0.54 -8.27 16 13 C 0.08 0.83 9.24 59.85 0.55 1.38 16 14 C 0.54 9.46 7.69 -10.99 -0.08 9.38 16 15 O -0.51 -10.67 15.34 5.55 0.09 -10.59 16 16 C -0.15 -2.93 4.71 36.01 0.17 -2.76 16 17 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 18 C -0.53 -14.97 9.50 30.94 0.29 -14.67 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -25.81 13.22 55.49 0.73 -25.07 16 22 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 C 0.09 0.68 7.24 -2.98 -0.02 0.66 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.75 6.73 -51.93 -0.35 0.40 16 30 H 0.20 0.84 8.06 -52.48 -0.42 0.42 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.13 1.35 7.22 -51.93 -0.37 0.98 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.87 6.44 -51.93 -0.33 0.53 16 36 H 0.07 0.72 5.33 -51.93 -0.28 0.44 16 37 H 0.09 1.65 7.40 -51.91 -0.38 1.27 16 38 H 0.09 1.65 8.11 -51.92 -0.42 1.23 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.76 7.34 -51.93 -0.38 0.37 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -35.39 364.08 -6.68 -42.07 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -5.03 Total: -2.37 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -0.39 Total: 0.82 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.16 Total: -42.55 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.32 Total: -15.82 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.39 -6.68 -42.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001299314868.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.468 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds