Wall clock time and date at job start Tue Mar 31 2020 22:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41260 * 128.08032 * 2 1 4 4 N 1.30128 * 106.59511 * 179.97438 * 3 2 1 5 5 O 1.20883 * 111.97888 * 359.72264 * 4 3 2 6 6 C 1.34647 * 111.47091 * 0.45254 * 5 4 3 7 7 C 1.47507 * 126.94619 * 179.82726 * 6 5 4 8 8 O 1.21590 * 120.00016 * 179.68753 * 7 6 5 9 9 N 1.34777 * 120.00215 * 359.68474 * 7 6 5 10 10 C 1.47585 * 134.49353 * 180.02562 * 9 7 6 11 11 C 1.53947 * 86.11441 * 155.36057 * 10 9 7 12 12 N 1.46510 * 113.74068 * 269.15382 * 11 10 9 13 13 C 1.46498 * 120.00052 * 58.07625 * 12 11 10 14 14 C 1.34770 * 119.99490 * 238.07607 * 12 11 10 15 15 O 1.21284 * 120.00553 * 0.02562 * 14 12 11 16 16 C 1.50702 * 119.99629 * 180.02562 * 14 12 11 17 17 S 1.81003 * 109.47412 * 180.02562 * 16 14 12 18 18 C 1.76194 * 100.00065 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00011 * 359.97438 * 18 17 16 20 20 C 1.38807 * 119.99684 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00125 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99784 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47201 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46885 * 120.00390 * 22 20 18 25 25 H 1.48497 * 109.47428 * 240.00190 * 22 20 18 26 26 C 1.47580 * 134.49108 * 0.02562 * 9 7 6 27 27 H 1.08998 * 109.47011 * 270.00313 * 1 2 3 28 28 H 1.09005 * 109.47013 * 29.99804 * 1 2 3 29 29 H 1.08996 * 109.47387 * 149.99774 * 1 2 3 30 30 H 1.08006 * 126.70513 * 0.03848 * 3 2 1 31 31 H 1.08996 * 113.76681 * 41.05704 * 10 9 7 32 32 H 1.08994 * 113.76726 * 269.66003 * 10 9 7 33 33 H 1.09002 * 113.73955 * 137.95260 * 11 10 9 34 34 H 1.08999 * 109.47079 * 89.99894 * 13 12 11 35 35 H 1.08993 * 109.47138 * 209.99833 * 13 12 11 36 36 H 1.09006 * 109.46966 * 329.99946 * 13 12 11 37 37 H 1.09007 * 109.47021 * 300.00003 * 16 14 12 38 38 H 1.08991 * 109.47444 * 59.99823 * 16 14 12 39 39 H 0.97003 * 120.00158 * 179.97438 * 21 20 18 40 40 H 1.08996 * 113.77201 * 90.33634 * 26 9 7 41 41 H 1.09002 * 113.76575 * 318.93589 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1119 0.0000 4 7 3.5891 0.6353 0.0006 5 8 3.5995 -0.5735 0.0063 6 6 2.3508 -1.0771 0.0006 7 6 1.9695 -2.5021 0.0013 8 8 0.7951 -2.8172 0.0014 9 7 2.9228 -3.4548 0.0018 10 6 2.9102 -4.9306 0.0021 11 6 4.3074 -4.8383 -0.6378 12 7 4.2851 -4.8181 -2.1026 13 6 3.5406 -3.7731 -2.8096 14 6 4.9496 -5.7610 -2.7995 15 8 5.5656 -6.6264 -2.2143 16 6 4.9272 -5.7400 -4.3063 17 16 5.9038 -7.1243 -4.9436 18 6 5.7099 -6.8638 -6.6754 19 1 5.1195 -6.0335 -7.0338 20 6 6.3159 -7.7258 -7.5790 21 7 7.0350 -8.7380 -7.1421 22 14 6.1097 -7.4501 -9.4150 23 1 5.2606 -6.2534 -9.6435 24 1 7.4417 -7.2374 -10.0362 25 1 5.4635 -8.6399 -10.0248 26 6 4.3986 -3.4412 0.0023 27 1 -0.3633 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 2.0948 2.1541 0.0006 31 1 2.1545 -5.3635 -0.6533 32 1 2.9120 -5.3697 0.9996 33 1 5.0233 -5.5539 -0.2335 34 1 4.1943 -2.9197 -2.9895 35 1 3.1823 -4.1635 -3.7621 36 1 2.6912 -3.4587 -2.2031 37 1 3.8986 -5.8302 -4.6556 38 1 5.3510 -4.8013 -4.6629 39 1 7.4582 -9.3406 -7.7736 40 1 4.8376 -3.4429 0.9999 41 1 4.8311 -2.6852 -0.6530 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001299314868.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:54 Heat of formation + Delta-G solvation = 24.032026 kcal Electronic energy + Delta-G solvation = -26714.786013 eV Core-core repulsion = 22725.838111 eV Total energy + Delta-G solvation = -3988.947902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.08460 -42.04001 -40.39407 -38.98775 -35.90100 -35.63884 -34.58076 -33.53910 -31.61231 -30.24125 -29.04939 -27.77234 -27.62852 -27.36755 -25.01824 -23.58972 -22.63389 -21.24319 -20.15401 -19.63074 -19.03421 -18.87918 -18.31074 -17.60665 -17.01592 -16.95229 -16.87496 -16.65350 -16.52999 -15.78471 -15.31730 -14.76670 -14.69744 -14.59403 -14.38408 -14.31063 -14.19529 -14.07411 -13.65411 -13.58392 -13.43648 -13.31095 -13.14591 -12.91658 -12.85926 -12.59423 -12.39810 -12.29440 -11.71362 -11.45022 -11.33352 -11.15480 -11.00167 -10.60942 -10.26804 -9.96735 -9.74912 -8.66022 -8.34680 -6.12067 -0.34184 1.03135 1.23602 1.29382 1.41372 1.44448 1.49963 1.56379 1.77837 1.88765 2.00239 2.27169 2.99694 3.10874 3.20821 3.23629 3.35733 3.59933 3.67608 3.76037 3.94269 4.06272 4.17226 4.22408 4.26144 4.37164 4.46554 4.49840 4.52841 4.61684 4.67930 4.72077 4.77943 4.78498 4.81043 4.90724 5.24528 5.42623 5.47271 6.13354 6.20483 6.30615 6.63468 7.00332 7.06736 7.07367 8.74633 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018422 B = 0.002377 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.552854 B =11777.572208 C =12412.545844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.119 4.119 3 C -0.004 4.004 4 N -0.364 5.364 5 O 0.110 5.890 6 C -0.106 4.106 7 C 0.626 3.374 8 O -0.541 6.541 9 N -0.633 5.633 10 C 0.105 3.895 11 C 0.103 3.897 12 N -0.592 5.592 13 C 0.075 3.925 14 C 0.541 3.459 15 O -0.552 6.552 16 C -0.127 4.127 17 S -0.145 6.145 18 C -0.545 4.545 19 H 0.081 0.919 20 C 0.014 3.986 21 N -0.910 5.910 22 Si 0.997 3.003 23 H -0.258 1.258 24 H -0.274 1.274 25 H -0.274 1.274 26 C 0.103 3.897 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.233 0.767 31 H 0.080 0.920 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.271 0.729 40 H 0.138 0.862 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.470 20.666 17.157 29.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C -0.181 4.181 4 N -0.065 5.065 5 O 0.039 5.961 6 C -0.171 4.171 7 C 0.414 3.586 8 O -0.420 6.420 9 N -0.367 5.367 10 C -0.017 4.017 11 C -0.002 4.002 12 N -0.326 5.326 13 C -0.067 4.067 14 C 0.329 3.671 15 O -0.429 6.429 16 C -0.278 4.278 17 S 0.082 5.918 18 C -0.693 4.693 19 H 0.099 0.901 20 C -0.191 4.191 21 N -0.546 5.546 22 Si 0.819 3.181 23 H -0.182 1.182 24 H -0.199 1.199 25 H -0.200 1.200 26 C -0.019 4.019 27 H 0.107 0.893 28 H 0.119 0.881 29 H 0.090 0.910 30 H 0.249 0.751 31 H 0.098 0.902 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.155 0.845 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.026 19.794 17.973 28.920 hybrid contribution -1.337 0.756 -1.735 2.318 sum -12.363 20.550 16.237 28.962 Atomic orbital electron populations 1.20394 0.85089 1.04619 1.04086 1.22024 0.99945 0.90161 1.00266 1.25568 0.86645 1.03461 1.02444 1.73774 1.24335 0.91392 1.17009 1.84979 1.28032 1.15521 1.67562 1.23900 0.85278 0.95760 1.12182 1.16143 0.84250 0.81393 0.76837 1.90856 1.17695 1.80907 1.52493 1.50109 1.08087 1.07621 1.70883 1.23901 0.96655 0.78142 1.03045 1.22610 0.98575 0.99287 0.79757 1.47444 1.50794 1.28656 1.05658 1.21968 0.96478 0.90501 0.97769 1.20023 0.77702 0.80559 0.88804 1.90689 1.43526 1.37310 1.71354 1.23393 1.05255 1.04457 0.94672 1.85506 1.66154 1.35326 1.04795 1.23212 1.37771 1.17005 0.91299 0.90101 1.26094 0.93886 0.93970 1.05114 1.70176 1.31848 1.15639 1.36973 0.84930 0.78397 0.78694 0.76082 1.18159 1.19923 1.19956 1.23962 0.78134 0.96303 1.03544 0.89286 0.88066 0.90982 0.75109 0.90171 0.85056 0.85208 0.91162 0.90441 0.90609 0.87669 0.87544 0.91976 0.84462 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.96 9.95 71.24 0.71 -0.25 16 2 C -0.12 -1.78 6.37 -19.45 -0.12 -1.91 16 3 C 0.00 -0.05 12.14 85.69 1.04 0.99 16 4 N -0.36 -6.59 12.04 -58.56 -0.71 -7.29 16 5 O 0.11 2.00 9.87 65.78 0.65 2.65 16 6 C -0.11 -1.91 7.22 24.39 0.18 -1.74 16 7 C 0.63 12.61 7.08 86.69 0.61 13.23 16 8 O -0.54 -13.78 15.84 -4.00 -0.06 -13.84 16 9 N -0.63 -10.45 2.22 -841.00 -1.87 -12.32 16 10 C 0.10 1.64 8.24 86.48 0.71 2.36 16 11 C 0.10 1.88 4.52 46.75 0.21 2.09 16 12 N -0.59 -14.50 3.09 -828.31 -2.56 -17.06 16 13 C 0.08 1.51 9.24 127.77 1.18 2.69 16 14 C 0.54 18.97 7.69 87.66 0.67 19.65 16 15 O -0.55 -23.58 15.34 -3.04 -0.05 -23.63 16 16 C -0.13 -4.93 4.71 71.24 0.34 -4.59 16 17 S -0.15 -7.89 20.57 -56.49 -1.16 -9.06 16 18 C -0.55 -30.78 9.50 67.96 0.65 -30.13 16 19 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 20 C 0.01 0.80 5.49 84.86 0.47 1.27 16 21 N -0.91 -55.31 13.22 21.65 0.29 -55.02 16 22 Si 1.00 43.33 29.55 68.60 2.03 45.35 16 23 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 C 0.10 1.34 7.24 86.48 0.63 1.97 16 27 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.07 1.13 6.73 -2.39 -0.02 1.11 16 30 H 0.23 1.10 8.06 -2.91 -0.02 1.08 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.13 2.55 7.22 -2.39 -0.02 2.53 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.59 6.44 -2.39 -0.02 1.57 16 36 H 0.08 1.46 5.33 -2.38 -0.01 1.45 16 37 H 0.11 3.76 7.40 -2.39 -0.02 3.75 16 38 H 0.11 3.78 8.11 -2.40 -0.02 3.76 16 39 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.10 1.31 7.34 -2.39 -0.02 1.29 16 Total: -1.00 -79.19 364.08 4.89 -74.30 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 1.07 Total: 10.30 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 7.27 Total: 5.62 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -4.85 Total: -91.69 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: 0.54 Total: -34.82 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: -7.89 SS G_CDS: -1.16 Total: -9.06 kcal Total: -79.19 4.89 -74.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001299314868.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.330 kcal (2) G-P(sol) polarization free energy of solvation -79.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds