Wall clock time and date at job start Tue Mar 31 2020 22:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34260 * 126.52834 * 2 1 4 4 C 1.34048 * 108.23028 * 179.97438 * 3 2 1 5 5 N 1.29937 * 109.23905 * 359.74634 * 4 3 2 6 6 C 1.36070 * 108.47989 * 0.40662 * 5 4 3 7 7 C 1.47413 * 126.44750 * 179.85958 * 6 5 4 8 8 O 1.21609 * 119.99838 * 185.36065 * 7 6 5 9 9 N 1.34781 * 120.00125 * 5.36050 * 7 6 5 10 10 C 1.46489 * 120.00124 * 355.90913 * 9 7 6 11 11 C 1.46497 * 119.99802 * 175.90241 * 9 7 6 12 12 C 1.53492 * 114.20991 * 240.00083 * 11 9 7 13 13 N 1.47068 * 87.98877 * 220.15052 * 12 11 9 14 14 C 1.34772 * 136.05938 * 207.08440 * 13 12 11 15 15 O 1.21283 * 120.00071 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00321 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47560 * 180.02562 * 16 14 13 18 18 C 1.76196 * 99.99867 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00514 * 359.97438 * 18 17 16 20 20 C 1.38804 * 119.99841 * 179.72721 * 18 17 16 21 21 N 1.31636 * 119.99749 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00294 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46861 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47490 * 119.99517 * 22 20 18 25 25 H 1.48501 * 109.47451 * 239.99572 * 22 20 18 26 26 C 1.47064 * 87.88365 * 27.34147 * 13 12 11 27 27 H 1.09006 * 109.47004 * 270.04302 * 1 2 3 28 28 H 1.09004 * 109.47171 * 30.03503 * 1 2 3 29 29 H 1.08993 * 109.47728 * 150.03912 * 1 2 3 30 30 H 1.07999 * 125.37975 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.47063 * 275.71953 * 10 9 7 32 32 H 1.09003 * 109.47367 * 35.71614 * 10 9 7 33 33 H 1.08996 * 109.47798 * 155.71760 * 10 9 7 34 34 H 1.09008 * 113.28415 * 13.07412 * 11 9 7 35 35 H 1.09003 * 113.46768 * 105.36946 * 12 11 9 36 36 H 1.08998 * 113.47059 * 334.92976 * 12 11 9 37 37 H 1.09003 * 109.47180 * 59.99801 * 16 14 13 38 38 H 1.09009 * 109.47061 * 300.00410 * 16 14 13 39 39 H 0.97001 * 119.99564 * 180.02562 * 21 20 18 40 40 H 1.08996 * 113.46794 * 87.43505 * 26 13 12 41 41 H 1.09003 * 113.46833 * 217.87949 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6580 0.0006 5 7 3.6002 -0.6412 0.0064 6 6 2.3169 -1.0936 0.0005 7 6 1.8853 -2.5032 0.0012 8 8 0.7052 -2.7777 -0.1029 9 7 2.7986 -3.4876 0.1170 10 6 4.2263 -3.1618 0.1521 11 6 2.3633 -4.8835 0.2080 12 6 2.7929 -5.5938 1.4990 13 7 3.0740 -6.7876 0.6873 14 6 3.0986 -8.1189 0.8954 15 8 2.8397 -8.5660 1.9926 16 6 3.4467 -9.0521 -0.2355 17 16 3.3936 -10.7622 0.3551 18 6 3.8285 -11.6111 -1.1263 19 1 4.0299 -11.0536 -2.0290 20 6 3.9172 -12.9963 -1.1319 21 7 3.6770 -13.6756 -0.0302 22 14 4.3775 -13.8965 -2.7026 23 1 4.5948 -12.9112 -3.7922 24 1 5.6239 -14.6730 -2.4811 25 1 3.2795 -14.8210 -3.0833 26 6 3.3230 -5.8888 -0.4498 27 1 -0.3633 0.0008 1.0277 28 1 -0.3634 0.8897 -0.5144 29 1 -0.3634 -0.8902 -0.5132 30 1 4.4490 1.2977 0.0011 31 1 4.6012 -3.0612 -0.8665 32 1 4.3718 -2.2233 0.6871 33 1 4.7684 -3.9582 0.6617 34 1 1.3145 -5.0257 -0.0527 35 1 1.9779 -5.7339 2.2092 36 1 3.6822 -5.1613 1.9573 37 1 4.4484 -8.8239 -0.5996 38 1 2.7281 -8.9253 -1.0454 39 1 3.7394 -14.6436 -0.0340 40 1 4.3520 -5.5338 -0.5053 41 1 2.9596 -6.2801 -1.4001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001299320066.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:26 Heat of formation + Delta-G solvation = -12.507759 kcal Electronic energy + Delta-G solvation = -25999.674538 eV Core-core repulsion = 22009.142152 eV Total energy + Delta-G solvation = -3990.532386 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.44409 -41.94690 -40.41356 -38.96048 -36.38191 -35.45442 -34.60125 -33.37244 -31.98576 -29.53532 -28.44406 -27.81987 -27.65266 -26.96269 -25.22244 -23.47244 -22.29562 -20.81078 -20.30539 -19.59170 -18.78827 -18.26335 -17.94496 -17.92838 -17.10684 -17.01419 -16.89037 -16.36374 -16.23734 -15.76423 -15.72803 -15.10493 -14.90196 -14.55934 -14.34639 -14.12626 -13.95043 -13.90742 -13.77770 -13.70025 -13.64835 -13.18069 -13.07762 -13.02115 -12.91878 -12.61328 -12.44237 -12.12929 -11.73871 -11.55891 -11.17816 -11.17162 -11.00163 -10.31532 -10.06253 -9.88751 -9.66073 -8.70487 -8.36274 -6.15346 0.03292 1.04634 1.10449 1.37166 1.41056 1.43471 1.53141 1.59847 1.75063 2.10997 2.13382 2.25413 2.98002 3.03994 3.12908 3.21518 3.48593 3.63091 3.67251 3.80106 3.95708 4.20949 4.25683 4.27083 4.32975 4.39176 4.41177 4.47157 4.51438 4.58848 4.71805 4.73935 4.85042 4.89755 5.02072 5.12607 5.29988 5.40749 5.51822 6.11707 6.18721 6.46444 6.49722 6.93213 6.99721 7.04888 8.73339 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.028265 B = 0.001894 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.372036 B =14776.134841 C =14965.845399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.047 3.953 3 O -0.200 6.200 4 C 0.194 3.806 5 N -0.482 5.482 6 C -0.103 4.103 7 C 0.599 3.401 8 O -0.560 6.560 9 N -0.584 5.584 10 C 0.066 3.934 11 C 0.122 3.878 12 C 0.091 3.909 13 N -0.647 5.647 14 C 0.566 3.434 15 O -0.564 6.564 16 C -0.118 4.118 17 S -0.150 6.150 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 1.001 2.999 23 H -0.256 1.256 24 H -0.273 1.273 25 H -0.274 1.274 26 C 0.095 3.905 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.303 0.697 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.125 0.875 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.272 0.728 40 H 0.118 0.882 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.999 36.434 -3.783 36.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.011 4.011 3 O -0.087 6.087 4 C -0.033 4.033 5 N -0.210 5.210 6 C -0.221 4.221 7 C 0.389 3.611 8 O -0.440 6.440 9 N -0.315 5.315 10 C -0.075 4.075 11 C 0.017 3.983 12 C -0.033 4.033 13 N -0.384 5.384 14 C 0.356 3.644 15 O -0.442 6.442 16 C -0.269 4.269 17 S 0.077 5.923 18 C -0.692 4.692 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.823 3.177 23 H -0.180 1.180 24 H -0.198 1.198 25 H -0.199 1.199 26 C -0.027 4.027 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.317 0.683 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.098 0.902 34 H 0.143 0.857 35 H 0.090 0.910 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.081 0.919 40 H 0.136 0.864 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.556 34.863 -2.095 34.931 hybrid contribution 0.131 -0.109 -1.616 1.625 sum 0.686 34.755 -3.711 34.959 Atomic orbital electron populations 1.20678 0.81679 1.05888 1.05398 1.24028 0.95989 0.83288 0.97759 1.84430 1.19223 1.35757 1.69280 1.29296 0.85676 0.91243 0.97134 1.70844 1.20411 1.11045 1.18750 1.21204 0.90155 0.94628 1.16119 1.17072 0.84801 0.83538 0.75718 1.90779 1.17657 1.83590 1.51957 1.47468 1.08515 1.04462 1.71014 1.22449 0.77469 1.03900 1.03726 1.22714 1.00383 0.79361 0.95878 1.23572 1.01761 0.81818 0.96110 1.49176 1.69547 1.02678 1.16967 1.19605 0.75718 0.80537 0.88562 1.90703 1.50240 1.75886 1.27354 1.23263 1.06020 0.97667 0.99916 1.85611 1.91478 0.95931 1.19273 1.23214 1.54440 0.94710 0.96870 0.89828 1.26167 0.94378 0.97432 1.01289 1.70196 1.47140 1.08070 1.29360 0.84870 0.77984 0.77910 0.76952 1.17970 1.19817 1.19936 1.23718 1.01378 0.86019 0.91622 0.88091 0.87825 0.88409 0.68263 0.91374 0.87272 0.90247 0.85673 0.90957 0.87596 0.87205 0.87460 0.91941 0.86393 0.88276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 9.94 71.23 0.71 -0.14 16 2 C 0.05 0.65 7.44 25.18 0.19 0.84 16 3 O -0.20 -2.02 10.73 0.37 0.00 -2.01 16 4 C 0.19 1.17 13.19 130.52 1.72 2.89 16 5 N -0.48 -6.06 7.82 -305.16 -2.39 -8.44 16 6 C -0.10 -1.76 6.68 40.40 0.27 -1.49 16 7 C 0.60 12.62 7.66 86.66 0.66 13.29 16 8 O -0.56 -14.58 14.28 -4.06 -0.06 -14.63 16 9 N -0.58 -10.35 3.11 -825.30 -2.57 -12.92 16 10 C 0.07 0.82 8.47 127.77 1.08 1.90 16 11 C 0.12 2.41 4.59 45.55 0.21 2.62 16 12 C 0.09 2.09 8.16 83.17 0.68 2.76 16 13 N -0.65 -18.46 3.69 -857.86 -3.16 -21.62 16 14 C 0.57 22.59 8.10 87.66 0.71 23.30 16 15 O -0.56 -27.94 16.64 -3.04 -0.05 -27.99 16 16 C -0.12 -4.88 5.98 71.24 0.43 -4.45 16 17 S -0.15 -8.52 20.57 -56.49 -1.16 -9.69 16 18 C -0.54 -31.41 9.50 67.96 0.65 -30.77 16 19 H 0.08 4.48 7.80 -2.91 -0.02 4.45 16 20 C 0.01 0.69 5.49 84.86 0.47 1.16 16 21 N -0.91 -56.45 13.22 21.65 0.29 -56.16 16 22 Si 1.00 43.87 29.55 68.60 2.03 45.90 16 23 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 26 C 0.10 1.80 7.83 83.27 0.65 2.45 16 27 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.10 1.42 6.38 -2.39 -0.02 1.41 16 30 H 0.30 -1.75 8.06 -2.91 -0.02 -1.77 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.11 1.40 5.21 -2.39 -0.01 1.39 16 33 H 0.08 0.82 5.95 -2.39 -0.01 0.81 16 34 H 0.13 2.87 7.26 -2.38 -0.02 2.85 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.11 2.00 7.05 -2.39 -0.02 1.98 16 37 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 38 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 39 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 40 H 0.12 1.64 6.43 -2.39 -0.02 1.63 16 41 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -85.84 363.42 2.42 -83.42 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 1.08 Total: 9.80 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 8.42 Total: 14.35 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -7.83 Total: -99.14 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -0.10 Total: -44.64 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.69 kcal Total: -85.84 2.42 -83.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001299320066.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.910 kcal (2) G-P(sol) polarization free energy of solvation -85.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds