Wall clock time and date at job start Tue Mar 31 2020 22:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.75051 * 2 1 4 4 C 1.29031 * 117.12841 * 180.33258 * 3 2 1 5 5 S 1.70975 * 110.16332 * 359.71167 * 4 3 2 6 6 C 1.33640 * 122.75481 * 179.79323 * 2 1 3 7 7 C 1.50705 * 126.03512 * 359.97438 * 6 2 1 8 8 N 1.46495 * 109.46984 * 89.71485 * 7 6 2 9 9 C 1.34783 * 119.99827 * 180.02562 * 8 7 6 10 10 O 1.21348 * 119.99988 * 359.97438 * 9 8 7 11 11 C 1.49449 * 119.99799 * 180.02562 * 9 8 7 12 12 O 1.21351 * 120.00163 * 0.02562 * 11 9 8 13 13 N 1.34775 * 119.99970 * 179.97438 * 11 9 8 14 14 C 1.47021 * 125.64789 * 0.03799 * 13 11 9 15 15 C 1.54370 * 107.28813 * 181.05641 * 14 13 11 16 16 C 1.55147 * 102.92092 * 22.14333 * 15 14 13 17 17 O 1.42905 * 111.00578 * 82.63751 * 16 15 14 18 18 C 1.50702 * 111.00308 * 206.45025 * 16 15 14 19 19 H 1.08002 * 120.00299 * 356.82421 * 18 16 15 20 20 C 1.37884 * 119.99942 * 176.53980 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.47423 * 125.64985 * 179.97438 * 13 11 9 27 27 H 1.08992 * 109.47270 * 270.20228 * 1 2 3 28 28 H 1.09000 * 109.47063 * 30.20706 * 1 2 3 29 29 H 1.09001 * 109.46682 * 150.20460 * 1 2 3 30 30 H 1.07997 * 124.91981 * 179.67250 * 4 3 2 31 31 H 1.09004 * 109.46710 * 329.71713 * 7 6 2 32 32 H 1.08993 * 109.47243 * 209.71736 * 7 6 2 33 33 H 0.96996 * 120.00455 * 359.97438 * 8 7 6 34 34 H 1.09001 * 109.88518 * 300.44553 * 14 13 11 35 35 H 1.09002 * 109.88165 * 61.60862 * 14 13 11 36 36 H 1.09001 * 110.70699 * 263.79361 * 15 14 13 37 37 H 1.09008 * 110.75075 * 140.51110 * 15 14 13 38 38 H 0.96701 * 113.99475 * 183.17547 * 17 16 15 39 39 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 40 40 H 1.08996 * 110.36708 * 37.06908 * 26 13 11 41 41 H 1.08999 * 110.36888 * 274.74656 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5040 0.9820 -0.0067 5 16 3.9333 -0.6730 -0.0059 6 6 2.2301 -1.1239 0.0041 7 6 1.6848 -2.5288 0.0097 8 7 1.5012 -2.9869 -1.3697 9 6 1.0201 -4.2226 -1.6110 10 8 0.7394 -4.9558 -0.6857 11 6 0.8334 -4.6900 -3.0182 12 8 1.1153 -3.9573 -3.9435 13 7 0.3527 -5.9258 -3.2595 14 6 -0.0272 -6.9121 -2.2376 15 6 -0.4940 -8.1836 -2.9782 16 6 0.1822 -8.0437 -4.3676 17 8 1.5355 -8.5010 -4.3270 18 6 -0.6012 -8.7769 -5.4258 19 1 -1.4765 -9.3471 -5.1519 20 6 -0.2037 -8.7150 -6.7447 21 7 0.8623 -8.0207 -7.0783 22 14 -1.1791 -9.6176 -8.0574 23 1 -2.3260 -10.3193 -7.4271 24 1 -1.6847 -8.6422 -9.0567 25 1 -0.3024 -10.6082 -8.7323 26 6 0.1196 -6.5120 -4.5920 27 1 -0.3633 0.0036 1.0276 28 1 -0.3633 0.8881 -0.5170 29 1 -0.3633 -0.8918 -0.5107 30 1 4.2060 1.8027 -0.0126 31 1 0.7262 -2.5444 0.5283 32 1 2.3855 -3.1885 0.5213 33 1 1.7252 -2.4007 -2.1093 34 1 0.8325 -7.1446 -1.6090 35 1 -0.8400 -6.5189 -1.6270 36 1 -1.5795 -8.1954 -3.0770 37 1 -0.1424 -9.0796 -2.4666 38 1 2.0139 -8.3882 -5.1598 39 1 1.1421 -7.9775 -8.0061 40 1 0.8992 -6.1982 -5.2861 41 1 -0.8622 -6.2231 -4.9671 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326401748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:20 Heat of formation + Delta-G solvation = -65.848651 kcal Electronic energy + Delta-G solvation = -26860.713328 eV Core-core repulsion = 22867.867907 eV Total energy + Delta-G solvation = -3992.845421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.58172 -40.12061 -38.50995 -37.21065 -35.53152 -34.22425 -32.31094 -32.23225 -30.25530 -29.44343 -27.95372 -26.38381 -25.54561 -24.61540 -23.36294 -21.71383 -20.06067 -19.67067 -19.14133 -18.53184 -17.40053 -17.16947 -16.68285 -16.16169 -15.67515 -15.52913 -15.16201 -14.93939 -14.67430 -14.39912 -14.11289 -13.92611 -13.41502 -13.08752 -13.06538 -12.96418 -12.90055 -12.80013 -12.47076 -12.32016 -11.67991 -11.57116 -11.53860 -11.18187 -11.09354 -10.80616 -10.59118 -10.48338 -10.22396 -10.05694 -9.83981 -9.42062 -9.37042 -9.27583 -9.06331 -8.72537 -8.43994 -7.92969 -6.32886 -4.42125 0.20432 0.94390 1.34254 1.72946 2.28326 2.71828 3.17618 3.26759 3.30206 3.54527 3.81418 3.88443 4.23603 4.28747 4.62424 4.67598 4.75073 4.95021 5.15970 5.24801 5.28132 5.42729 5.46539 5.52781 5.77470 5.82115 5.89556 6.02805 6.05118 6.29325 6.48738 6.70837 6.75402 6.81286 7.10072 7.17746 7.28419 7.30415 7.70055 7.78558 7.96752 7.99963 8.39687 8.62288 9.26867 9.37370 10.74478 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.024686 B = 0.002332 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.984229 B =12002.069102 C =12212.330592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.090 3.910 3 N -0.471 5.471 4 C 0.026 3.974 5 S 0.145 5.855 6 C -0.254 4.254 7 C 0.202 3.798 8 N -0.707 5.707 9 C 0.513 3.487 10 O -0.514 6.514 11 C 0.508 3.492 12 O -0.537 6.537 13 N -0.573 5.573 14 C 0.111 3.889 15 C -0.122 4.122 16 C 0.249 3.751 17 O -0.582 6.582 18 C -0.536 4.536 19 H 0.069 0.931 20 C 0.070 3.930 21 N -0.894 5.894 22 Si 0.905 3.095 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.091 3.909 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.202 0.798 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.413 0.587 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.383 0.617 39 H 0.270 0.730 40 H 0.089 0.911 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.444 14.707 14.320 20.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.044 4.044 3 N -0.185 5.185 4 C -0.272 4.272 5 S 0.399 5.601 6 C -0.376 4.376 7 C 0.077 3.923 8 N -0.362 5.362 9 C 0.294 3.706 10 O -0.388 6.388 11 C 0.290 3.710 12 O -0.416 6.416 13 N -0.304 5.304 14 C -0.012 4.012 15 C -0.160 4.160 16 C 0.208 3.792 17 O -0.391 6.391 18 C -0.574 4.574 19 H 0.087 0.913 20 C -0.133 4.133 21 N -0.533 5.533 22 Si 0.732 3.268 23 H -0.195 1.195 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.030 4.030 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.218 0.782 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.250 0.750 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.234 0.766 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.129 14.545 14.987 21.289 hybrid contribution -0.879 0.262 -1.674 1.909 sum 3.250 14.807 13.313 20.175 Atomic orbital electron populations 1.20464 0.86711 1.03971 1.03311 1.20372 0.98480 0.86014 0.99573 1.66258 1.05060 1.31397 1.15810 1.28435 0.95336 1.00400 1.02994 1.84216 1.06222 1.03086 1.66543 1.25659 0.95776 1.00077 1.16055 1.19527 1.01549 0.87414 0.83788 1.45848 1.65792 1.15831 1.08729 1.20463 0.77866 0.81833 0.90433 1.90739 1.48477 1.53968 1.45662 1.19490 0.80544 0.82465 0.88513 1.90735 1.51456 1.54236 1.45181 1.48651 1.58540 1.11939 1.11312 1.22164 0.99870 0.88878 0.90246 1.22726 1.00294 0.95925 0.97026 1.19637 0.81388 0.87278 0.90924 1.86110 1.25952 1.86162 1.40860 1.21519 1.12696 1.31683 0.91513 0.91281 1.25100 0.94964 0.94360 0.98896 1.69659 1.24254 1.40209 1.19205 0.86324 0.79963 0.79459 0.81021 1.19539 1.20775 1.20726 1.23524 1.01655 0.96674 0.81168 0.90194 0.90181 0.90272 0.78164 0.88808 0.89700 0.75021 0.91140 0.91701 0.90351 0.90470 0.76585 0.91956 0.89280 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 9.82 36.01 0.35 -0.34 16 2 C 0.09 0.88 6.74 -84.22 -0.57 0.31 16 3 N -0.47 -4.80 10.53 -11.90 -0.13 -4.92 16 4 C 0.03 0.20 12.23 51.59 0.63 0.83 16 5 S 0.14 1.13 23.22 -107.50 -2.50 -1.37 16 6 C -0.25 -2.38 5.96 -35.92 -0.21 -2.60 16 7 C 0.20 2.04 5.59 -5.19 -0.03 2.01 16 8 N -0.71 -8.95 5.54 -61.91 -0.34 -9.29 16 9 C 0.51 8.31 7.86 -11.58 -0.09 8.22 16 10 O -0.51 -8.85 14.12 5.50 0.08 -8.78 16 11 C 0.51 9.98 7.91 -11.59 -0.09 9.89 16 12 O -0.54 -11.58 16.73 5.50 0.09 -11.48 16 13 N -0.57 -11.90 3.33 -170.98 -0.57 -12.47 16 14 C 0.11 2.10 5.49 -3.04 -0.02 2.08 16 15 C -0.12 -2.44 6.13 -24.88 -0.15 -2.59 16 16 C 0.25 5.93 0.88 -89.61 -0.08 5.85 16 17 O -0.58 -14.70 13.17 -35.23 -0.46 -15.17 16 18 C -0.54 -13.63 8.26 -34.44 -0.28 -13.92 16 19 H 0.07 1.73 7.78 -52.49 -0.41 1.32 16 20 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 21 N -0.89 -23.29 10.69 55.43 0.59 -22.70 16 22 Si 0.91 19.97 29.54 -169.99 -5.02 14.95 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.09 2.12 5.50 -2.52 -0.01 2.11 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.64 7.36 -51.93 -0.38 0.26 16 30 H 0.20 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.09 0.88 7.44 -51.93 -0.39 0.50 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.41 5.16 7.94 -40.82 -0.32 4.84 16 34 H 0.07 1.34 7.58 -51.93 -0.39 0.95 16 35 H 0.06 1.12 7.70 -51.93 -0.40 0.72 16 36 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 37 H 0.08 1.49 8.14 -51.92 -0.42 1.06 16 38 H 0.38 9.93 7.26 45.56 0.33 10.26 16 39 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 40 H 0.09 2.31 7.47 -51.93 -0.39 1.93 16 41 H 0.07 1.62 8.03 -51.93 -0.42 1.20 16 LS Contribution 361.36 15.07 5.45 5.45 Total: -1.00 -29.85 361.36 -7.89 -37.74 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -4.43 Total: 14.50 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: -0.65 Total: 13.54 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.44 Total: -49.38 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -0.29 Total: -35.43 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.50 Total: -1.37 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.85 -7.89 -37.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326401748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.109 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds