Wall clock time and date at job start Tue Mar 31 2020 22:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.75051 * 2 1 4 4 C 1.29031 * 117.12841 * 180.33258 * 3 2 1 5 5 S 1.70975 * 110.16332 * 359.71167 * 4 3 2 6 6 C 1.33640 * 122.75481 * 179.79323 * 2 1 3 7 7 C 1.50705 * 126.03512 * 359.97438 * 6 2 1 8 8 N 1.46495 * 109.46984 * 89.71485 * 7 6 2 9 9 C 1.34783 * 119.99827 * 180.02562 * 8 7 6 10 10 O 1.21348 * 119.99988 * 359.97438 * 9 8 7 11 11 C 1.49449 * 119.99799 * 180.02562 * 9 8 7 12 12 O 1.21351 * 120.00163 * 0.02562 * 11 9 8 13 13 N 1.34775 * 119.99970 * 179.97438 * 11 9 8 14 14 C 1.47021 * 125.64789 * 0.03799 * 13 11 9 15 15 C 1.54370 * 107.28813 * 181.05641 * 14 13 11 16 16 C 1.55147 * 102.92092 * 22.14333 * 15 14 13 17 17 O 1.42905 * 111.00578 * 82.63751 * 16 15 14 18 18 C 1.50702 * 111.00308 * 206.45025 * 16 15 14 19 19 H 1.08002 * 120.00299 * 356.82421 * 18 16 15 20 20 C 1.37884 * 119.99942 * 176.53980 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.47423 * 125.64985 * 179.97438 * 13 11 9 27 27 H 1.08992 * 109.47270 * 270.20228 * 1 2 3 28 28 H 1.09000 * 109.47063 * 30.20706 * 1 2 3 29 29 H 1.09001 * 109.46682 * 150.20460 * 1 2 3 30 30 H 1.07997 * 124.91981 * 179.67250 * 4 3 2 31 31 H 1.09004 * 109.46710 * 329.71713 * 7 6 2 32 32 H 1.08993 * 109.47243 * 209.71736 * 7 6 2 33 33 H 0.96996 * 120.00455 * 359.97438 * 8 7 6 34 34 H 1.09001 * 109.88518 * 300.44553 * 14 13 11 35 35 H 1.09002 * 109.88165 * 61.60862 * 14 13 11 36 36 H 1.09001 * 110.70699 * 263.79361 * 15 14 13 37 37 H 1.09008 * 110.75075 * 140.51110 * 15 14 13 38 38 H 0.96701 * 113.99475 * 183.17547 * 17 16 15 39 39 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 40 40 H 1.08996 * 110.36708 * 37.06908 * 26 13 11 41 41 H 1.08999 * 110.36888 * 274.74656 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5040 0.9820 -0.0067 5 16 3.9333 -0.6730 -0.0059 6 6 2.2301 -1.1239 0.0041 7 6 1.6848 -2.5288 0.0097 8 7 1.5012 -2.9869 -1.3697 9 6 1.0201 -4.2226 -1.6110 10 8 0.7394 -4.9558 -0.6857 11 6 0.8334 -4.6900 -3.0182 12 8 1.1153 -3.9573 -3.9435 13 7 0.3527 -5.9258 -3.2595 14 6 -0.0272 -6.9121 -2.2376 15 6 -0.4940 -8.1836 -2.9782 16 6 0.1822 -8.0437 -4.3676 17 8 1.5355 -8.5010 -4.3270 18 6 -0.6012 -8.7769 -5.4258 19 1 -1.4765 -9.3471 -5.1519 20 6 -0.2037 -8.7150 -6.7447 21 7 0.8623 -8.0207 -7.0783 22 14 -1.1791 -9.6176 -8.0574 23 1 -2.3260 -10.3193 -7.4271 24 1 -1.6847 -8.6422 -9.0567 25 1 -0.3024 -10.6082 -8.7323 26 6 0.1196 -6.5120 -4.5920 27 1 -0.3633 0.0036 1.0276 28 1 -0.3633 0.8881 -0.5170 29 1 -0.3633 -0.8918 -0.5107 30 1 4.2060 1.8027 -0.0126 31 1 0.7262 -2.5444 0.5283 32 1 2.3855 -3.1885 0.5213 33 1 1.7252 -2.4007 -2.1093 34 1 0.8325 -7.1446 -1.6090 35 1 -0.8400 -6.5189 -1.6270 36 1 -1.5795 -8.1954 -3.0770 37 1 -0.1424 -9.0796 -2.4666 38 1 2.0139 -8.3882 -5.1598 39 1 1.1421 -7.9775 -8.0061 40 1 0.8992 -6.1982 -5.2861 41 1 -0.8622 -6.2231 -4.9671 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326401748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:19 Heat of formation + Delta-G solvation = -89.022535 kcal Electronic energy + Delta-G solvation = -26861.718223 eV Core-core repulsion = 22867.867907 eV Total energy + Delta-G solvation = -3993.850316 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.86615 -40.98041 -39.99086 -38.88297 -36.71383 -35.88838 -34.20174 -33.10672 -31.95475 -30.26928 -29.69133 -27.78536 -26.68294 -25.60265 -24.70808 -23.13896 -21.56375 -21.16815 -20.02127 -19.29462 -19.14507 -18.65406 -18.04848 -17.35943 -17.06898 -16.94376 -16.52759 -16.27672 -15.90637 -15.79776 -15.29502 -14.91747 -14.77226 -14.67403 -14.54123 -14.06947 -13.96810 -13.76409 -13.51291 -13.49917 -13.33461 -13.19240 -12.86864 -12.72885 -12.53058 -12.34002 -12.22847 -12.19296 -12.10104 -11.23174 -10.87268 -10.72306 -10.64719 -10.42858 -10.40714 -10.28573 -9.79070 -9.64172 -8.25839 -6.42124 -0.46042 0.30933 0.31678 0.70591 1.24376 1.42823 1.46528 1.56921 1.73447 2.09292 2.37818 2.54032 3.00495 3.22278 3.28905 3.55778 3.78112 3.92083 4.07654 4.15555 4.21346 4.33780 4.45260 4.46025 4.66210 4.69550 4.73787 4.76649 4.90079 4.95990 4.99741 5.06912 5.15273 5.26373 5.34536 5.44033 5.75249 5.90386 6.04719 6.34741 6.55989 6.65408 6.67165 6.87951 7.28655 7.36317 8.80159 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.024686 B = 0.002332 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.984229 B =12002.069102 C =12212.330592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.084 3.916 3 N -0.503 5.503 4 C 0.035 3.965 5 S 0.164 5.836 6 C -0.272 4.272 7 C 0.205 3.795 8 N -0.689 5.689 9 C 0.523 3.477 10 O -0.523 6.523 11 C 0.502 3.498 12 O -0.562 6.562 13 N -0.581 5.581 14 C 0.119 3.881 15 C -0.116 4.116 16 C 0.232 3.768 17 O -0.589 6.589 18 C -0.553 4.553 19 H 0.071 0.929 20 C 0.027 3.973 21 N -0.916 5.916 22 Si 0.966 3.034 23 H -0.264 1.264 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.104 3.896 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.233 0.767 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.415 0.585 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.376 0.624 39 H 0.270 0.730 40 H 0.055 0.945 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.225 15.298 15.675 22.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.050 4.050 3 N -0.217 5.217 4 C -0.262 4.262 5 S 0.419 5.581 6 C -0.394 4.394 7 C 0.081 3.919 8 N -0.343 5.343 9 C 0.303 3.697 10 O -0.399 6.399 11 C 0.285 3.715 12 O -0.443 6.443 13 N -0.313 5.313 14 C -0.003 4.003 15 C -0.153 4.153 16 C 0.192 3.808 17 O -0.397 6.397 18 C -0.591 4.591 19 H 0.089 0.911 20 C -0.174 4.174 21 N -0.555 5.555 22 Si 0.791 3.209 23 H -0.188 1.188 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.018 4.018 27 H 0.111 0.889 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.250 0.750 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.252 0.748 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.226 0.774 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.919 15.157 16.384 22.661 hybrid contribution -0.725 0.191 -2.080 2.210 sum 3.194 15.347 14.304 21.221 Atomic orbital electron populations 1.20501 0.86087 1.03784 1.04092 1.20623 0.99197 0.86160 0.99058 1.66317 1.06132 1.31761 1.17489 1.29036 0.95163 1.01318 1.00694 1.84166 1.04943 1.03027 1.65983 1.25565 0.96800 0.99455 1.17529 1.19648 1.02397 0.87970 0.81876 1.45830 1.63892 1.14340 1.10226 1.19700 0.78746 0.82897 0.88342 1.90736 1.49568 1.54520 1.45071 1.20202 0.79416 0.81778 0.90119 1.90712 1.52170 1.54819 1.46560 1.48685 1.59163 1.12818 1.10605 1.22193 1.00563 0.87959 0.89604 1.22739 1.00854 0.96955 0.94796 1.19877 0.80740 0.87194 0.93000 1.86102 1.26824 1.86381 1.40378 1.21805 1.12992 1.32004 0.92304 0.91099 1.25820 0.95801 0.95023 1.00774 1.69764 1.25292 1.41003 1.19454 0.85387 0.78774 0.78229 0.78510 1.18836 1.20789 1.20691 1.23092 0.99791 0.96865 0.82072 0.88916 0.90325 0.90442 0.75041 0.87783 0.89177 0.74829 0.91131 0.89425 0.88863 0.89636 0.77435 0.92008 0.92624 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.28 9.82 71.24 0.70 -0.58 16 2 C 0.08 1.52 6.74 41.52 0.28 1.80 16 3 N -0.50 -9.40 10.53 -191.55 -2.02 -11.42 16 4 C 0.03 0.46 12.23 130.65 1.60 2.05 16 5 S 0.16 2.24 23.22 -56.49 -1.31 0.93 16 6 C -0.27 -4.66 5.96 24.64 0.15 -4.51 16 7 C 0.21 3.78 5.59 85.64 0.48 4.26 16 8 N -0.69 -16.56 5.54 -468.14 -2.59 -19.15 16 9 C 0.52 16.34 7.86 87.27 0.69 17.03 16 10 O -0.52 -17.08 14.12 -3.24 -0.05 -17.13 16 11 C 0.50 19.66 7.91 87.27 0.69 20.35 16 12 O -0.56 -24.57 16.73 -3.25 -0.05 -24.62 16 13 N -0.58 -24.11 3.33 -813.23 -2.70 -26.82 16 14 C 0.12 4.32 5.49 86.75 0.48 4.80 16 15 C -0.12 -4.50 6.13 31.80 0.19 -4.30 16 16 C 0.23 11.14 0.88 -10.14 -0.01 11.13 16 17 O -0.59 -30.20 13.17 -148.98 -1.96 -32.17 16 18 C -0.55 -28.16 8.26 25.60 0.21 -27.95 16 19 H 0.07 3.50 7.78 -2.91 -0.02 3.48 16 20 C 0.03 1.36 5.29 84.66 0.45 1.81 16 21 N -0.92 -48.64 10.69 21.45 0.23 -48.41 16 22 Si 0.97 40.95 29.54 68.60 2.03 42.97 16 23 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 24 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 26 C 0.10 4.97 5.50 86.86 0.48 5.45 16 27 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.17 7.36 -2.39 -0.02 1.15 16 30 H 0.23 1.25 8.06 -2.91 -0.02 1.23 16 31 H 0.10 1.75 7.44 -2.39 -0.02 1.73 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.42 9.96 7.94 -92.71 -0.74 9.23 16 34 H 0.07 2.58 7.58 -2.39 -0.02 2.57 16 35 H 0.09 2.81 7.70 -2.39 -0.02 2.80 16 36 H 0.09 3.32 8.03 -2.39 -0.02 3.30 16 37 H 0.09 3.16 8.14 -2.38 -0.02 3.14 16 38 H 0.38 20.11 7.26 -74.06 -0.54 19.57 16 39 H 0.27 13.74 8.31 -92.70 -0.77 12.97 16 40 H 0.06 3.01 7.47 -2.39 -0.02 2.99 16 41 H 0.06 2.84 8.03 -2.39 -0.02 2.82 16 Total: -1.00 -63.83 361.36 -2.23 -66.06 By element: Atomic # 1 Polarization: 38.59 SS G_CDS: -0.17 Total: 38.42 kcal Atomic # 6 Polarization: 24.96 SS G_CDS: 6.38 Total: 31.34 kcal Atomic # 7 Polarization: -98.72 SS G_CDS: -7.09 Total: -105.80 kcal Atomic # 8 Polarization: -71.86 SS G_CDS: -2.06 Total: -73.92 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.97 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -1.31 Total: 0.93 kcal Total: -63.83 -2.23 -66.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326401748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.960 kcal (2) G-P(sol) polarization free energy of solvation -63.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds